Strain Fitness in Pseudomonas sp. S08-1 around OH686_05590

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_05585 and OH686_05590 are separated by 63 nucleotidesOH686_05590 and OH686_05595 are separated by 131 nucleotidesOH686_05595 and OH686_05600 are separated by 99 nucleotides OH686_05585: OH686_05585 - Transcriptional regulator, LysR family, at 1,127,823 to 1,128,710 _05585 OH686_05590: OH686_05590 - Transcriptional regulator, AraC family, at 1,128,774 to 1,129,724 _05590 OH686_05595: OH686_05595 - related to nicotinamidase, at 1,129,856 to 1,130,482 _05595 OH686_05600: OH686_05600 - Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) , at 1,130,582 to 1,131,019 _05600 Position (kb) 1128 1129 1130Strain fitness (log2 ratio) -2 -1 0 1 2at 1127.800 kb on - strandat 1127.912 kb on - strand, within OH686_05585at 1128.055 kb on + strand, within OH686_05585at 1128.055 kb on + strand, within OH686_05585at 1128.055 kb on + strand, within OH686_05585at 1128.055 kb on + strand, within OH686_05585at 1128.055 kb on + strand, within OH686_05585at 1128.056 kb on - strand, within OH686_05585at 1128.056 kb on - strand, within OH686_05585at 1128.205 kb on - strand, within OH686_05585at 1128.244 kb on + strand, within OH686_05585at 1128.244 kb on + strand, within OH686_05585at 1128.244 kb on + strand, within OH686_05585at 1128.245 kb on - strand, within OH686_05585at 1128.245 kb on - strand, within OH686_05585at 1128.245 kb on - strand, within OH686_05585at 1128.245 kb on - strand, within OH686_05585at 1128.245 kb on - strand, within OH686_05585at 1128.274 kb on + strand, within OH686_05585at 1128.274 kb on + strand, within OH686_05585at 1128.274 kb on + strand, within OH686_05585at 1128.275 kb on - strand, within OH686_05585at 1128.275 kb on - strand, within OH686_05585at 1128.275 kb on - strand, within OH686_05585at 1129.048 kb on - strand, within OH686_05590at 1129.285 kb on + strand, within OH686_05590at 1129.286 kb on - strand, within OH686_05590at 1129.286 kb on - strand, within OH686_05590at 1129.286 kb on - strand, within OH686_05590at 1129.399 kb on + strand, within OH686_05590at 1129.399 kb on + strand, within OH686_05590at 1129.399 kb on + strand, within OH686_05590at 1129.399 kb on + strand, within OH686_05590at 1129.399 kb on + strand, within OH686_05590at 1129.400 kb on - strand, within OH686_05590at 1129.400 kb on - strand, within OH686_05590at 1129.400 kb on - strand, within OH686_05590at 1129.400 kb on - strand, within OH686_05590at 1129.400 kb on - strand, within OH686_05590at 1129.618 kb on + strand, within OH686_05590at 1129.618 kb on + strand, within OH686_05590at 1129.618 kb on + strand, within OH686_05590at 1129.618 kb on + strand, within OH686_05590at 1129.618 kb on + strand, within OH686_05590at 1129.619 kb on - strand, within OH686_05590at 1129.775 kb on + strandat 1129.896 kb on + strandat 1129.896 kb on + strandat 1129.896 kb on + strandat 1129.897 kb on - strandat 1129.897 kb on - strandat 1129.897 kb on - strandat 1129.897 kb on - strandat 1129.907 kb on + strandat 1129.907 kb on + strandat 1129.907 kb on + strandat 1129.907 kb on + strandat 1129.907 kb on + strandat 1129.907 kb on + strandat 1129.907 kb on + strandat 1129.907 kb on + strandat 1129.907 kb on + strandat 1129.907 kb on + strandat 1129.907 kb on + strandat 1129.907 kb on + strandat 1129.907 kb on + strandat 1129.907 kb on + strandat 1129.907 kb on + strandat 1129.907 kb on + strandat 1129.908 kb on - strandat 1129.908 kb on - strandat 1129.908 kb on - strandat 1129.908 kb on - strandat 1129.908 kb on - strandat 1129.908 kb on - strandat 1129.908 kb on - strandat 1129.908 kb on - strandat 1129.908 kb on - strandat 1129.908 kb on - strandat 1129.963 kb on + strand, within OH686_05595at 1130.063 kb on + strand, within OH686_05595at 1130.063 kb on + strand, within OH686_05595at 1130.063 kb on + strand, within OH686_05595at 1130.063 kb on + strand, within OH686_05595at 1130.063 kb on + strand, within OH686_05595at 1130.064 kb on - strand, within OH686_05595at 1130.064 kb on - strand, within OH686_05595at 1130.064 kb on - strand, within OH686_05595at 1130.162 kb on + strand, within OH686_05595at 1130.162 kb on + strand, within OH686_05595at 1130.162 kb on + strand, within OH686_05595at 1130.163 kb on - strand, within OH686_05595at 1130.163 kb on - strand, within OH686_05595at 1130.204 kb on + strand, within OH686_05595at 1130.204 kb on + strand, within OH686_05595at 1130.204 kb on + strand, within OH686_05595at 1130.205 kb on - strand, within OH686_05595at 1130.205 kb on - strand, within OH686_05595at 1130.205 kb on - strand, within OH686_05595at 1130.205 kb on - strand, within OH686_05595at 1130.300 kb on + strand, within OH686_05595at 1130.301 kb on - strand, within OH686_05595at 1130.301 kb on - strand, within OH686_05595at 1130.447 kb on + strandat 1130.447 kb on + strandat 1130.447 kb on + strandat 1130.447 kb on + strandat 1130.447 kb on + strandat 1130.447 kb on + strandat 1130.447 kb on + strandat 1130.447 kb on + strandat 1130.447 kb on + strandat 1130.448 kb on - strandat 1130.448 kb on - strandat 1130.448 kb on - strandat 1130.448 kb on - strandat 1130.448 kb on - strandat 1130.448 kb on - strandat 1130.448 kb on - strandat 1130.448 kb on - strandat 1130.448 kb on - strandat 1130.448 kb on - strandat 1130.448 kb on - strandat 1130.448 kb on - strandat 1130.448 kb on - strandat 1130.496 kb on + strandat 1130.496 kb on + strandat 1130.496 kb on + strandat 1130.497 kb on - strandat 1130.497 kb on - strandat 1130.497 kb on - strandat 1130.497 kb on - strandat 1130.510 kb on + strandat 1130.510 kb on + strandat 1130.529 kb on + strandat 1130.529 kb on + strandat 1130.530 kb on - strandat 1130.566 kb on - strandat 1130.679 kb on + strand, within OH686_05600

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,127,800 - -0.8
1,127,912 - OH686_05585 0.10 +0.1
1,128,055 + OH686_05585 0.26 +0.2
1,128,055 + OH686_05585 0.26 -0.5
1,128,055 + OH686_05585 0.26 +1.2
1,128,055 + OH686_05585 0.26 -0.6
1,128,055 + OH686_05585 0.26 +0.1
1,128,056 - OH686_05585 0.26 -0.8
1,128,056 - OH686_05585 0.26 -0.5
1,128,205 - OH686_05585 0.43 +0.2
1,128,244 + OH686_05585 0.47 +0.8
1,128,244 + OH686_05585 0.47 +1.1
1,128,244 + OH686_05585 0.47 +0.2
1,128,245 - OH686_05585 0.48 +0.2
1,128,245 - OH686_05585 0.48 -0.3
1,128,245 - OH686_05585 0.48 +0.7
1,128,245 - OH686_05585 0.48 -0.7
1,128,245 - OH686_05585 0.48 +1.5
1,128,274 + OH686_05585 0.51 -0.8
1,128,274 + OH686_05585 0.51 -0.6
1,128,274 + OH686_05585 0.51 +1.8
1,128,275 - OH686_05585 0.51 +0.3
1,128,275 - OH686_05585 0.51 -0.7
1,128,275 - OH686_05585 0.51 -1.2
1,129,048 - OH686_05590 0.29 +0.2
1,129,285 + OH686_05590 0.54 -0.5
1,129,286 - OH686_05590 0.54 -0.1
1,129,286 - OH686_05590 0.54 -0.8
1,129,286 - OH686_05590 0.54 +0.0
1,129,399 + OH686_05590 0.66 +0.6
1,129,399 + OH686_05590 0.66 -1.1
1,129,399 + OH686_05590 0.66 -1.2
1,129,399 + OH686_05590 0.66 +0.8
1,129,399 + OH686_05590 0.66 -0.7
1,129,400 - OH686_05590 0.66 -0.6
1,129,400 - OH686_05590 0.66 +0.0
1,129,400 - OH686_05590 0.66 +1.6
1,129,400 - OH686_05590 0.66 +0.6
1,129,400 - OH686_05590 0.66 +0.2
1,129,618 + OH686_05590 0.89 -0.2
1,129,618 + OH686_05590 0.89 -0.7
1,129,618 + OH686_05590 0.89 -0.3
1,129,618 + OH686_05590 0.89 +0.5
1,129,618 + OH686_05590 0.89 +0.1
1,129,619 - OH686_05590 0.89 +0.5
1,129,775 + +0.2
1,129,896 + +0.2
1,129,896 + +0.2
1,129,896 + +0.9
1,129,897 - -0.5
1,129,897 - -0.7
1,129,897 - -0.9
1,129,897 - +0.5
1,129,907 + +0.3
1,129,907 + +0.8
1,129,907 + +1.1
1,129,907 + -1.0
1,129,907 + -0.2
1,129,907 + -0.2
1,129,907 + +0.6
1,129,907 + -0.5
1,129,907 + -0.1
1,129,907 + +0.7
1,129,907 + -0.2
1,129,907 + +0.6
1,129,907 + -1.9
1,129,907 + +0.5
1,129,907 + +0.5
1,129,907 + -0.3
1,129,908 - +0.2
1,129,908 - +0.3
1,129,908 - -0.1
1,129,908 - +0.4
1,129,908 - -0.5
1,129,908 - -1.1
1,129,908 - -0.4
1,129,908 - -0.4
1,129,908 - +0.1
1,129,908 - -0.8
1,129,963 + OH686_05595 0.17 +0.7
1,130,063 + OH686_05595 0.33 +0.0
1,130,063 + OH686_05595 0.33 -0.9
1,130,063 + OH686_05595 0.33 -0.4
1,130,063 + OH686_05595 0.33 +0.1
1,130,063 + OH686_05595 0.33 +0.4
1,130,064 - OH686_05595 0.33 -0.2
1,130,064 - OH686_05595 0.33 +0.1
1,130,064 - OH686_05595 0.33 +0.7
1,130,162 + OH686_05595 0.49 +0.8
1,130,162 + OH686_05595 0.49 +0.9
1,130,162 + OH686_05595 0.49 -0.5
1,130,163 - OH686_05595 0.49 -0.8
1,130,163 - OH686_05595 0.49 -0.3
1,130,204 + OH686_05595 0.56 -0.6
1,130,204 + OH686_05595 0.56 +0.7
1,130,204 + OH686_05595 0.56 -0.0
1,130,205 - OH686_05595 0.56 -0.2
1,130,205 - OH686_05595 0.56 +0.3
1,130,205 - OH686_05595 0.56 -2.3
1,130,205 - OH686_05595 0.56 -0.5
1,130,300 + OH686_05595 0.71 -0.2
1,130,301 - OH686_05595 0.71 -0.6
1,130,301 - OH686_05595 0.71 +0.2
1,130,447 + +0.2
1,130,447 + +0.1
1,130,447 + +0.2
1,130,447 + -0.3
1,130,447 + -2.1
1,130,447 + -0.0
1,130,447 + +0.2
1,130,447 + -0.1
1,130,447 + +0.2
1,130,448 - -0.8
1,130,448 - +0.3
1,130,448 - +0.6
1,130,448 - +0.2
1,130,448 - +0.9
1,130,448 - -0.2
1,130,448 - +1.3
1,130,448 - +0.1
1,130,448 - +0.0
1,130,448 - -0.8
1,130,448 - +0.6
1,130,448 - -0.3
1,130,448 - -0.3
1,130,496 + -0.8
1,130,496 + -0.3
1,130,496 + +0.8
1,130,497 - -1.0
1,130,497 - +0.0
1,130,497 - -0.2
1,130,497 - +0.6
1,130,510 + -0.1
1,130,510 + +0.3
1,130,529 + -0.4
1,130,529 + +0.2
1,130,530 - -0.1
1,130,566 - -0.2
1,130,679 + OH686_05600 0.22 -0.4

Or see this region's nucleotide sequence