Strain Fitness in Pseudomonas sp. S08-1 around OH686_04185

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_04180 and OH686_04185 are separated by 10 nucleotidesOH686_04185 and OH686_04190 are separated by 43 nucleotides OH686_04180: OH686_04180 - hypothetical protein, at 863,833 to 864,801 _04180 OH686_04185: OH686_04185 - Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) , at 864,812 to 865,303 _04185 OH686_04190: OH686_04190 - Cyclohexanone monooxygenase , at 865,347 to 866,849 _04190 Position (kb) 864 865 866Strain fitness (log2 ratio) -2 -1 0 1at 863.841 kb on + strandat 864.185 kb on - strand, within OH686_04180at 864.211 kb on + strand, within OH686_04180at 864.211 kb on + strand, within OH686_04180at 864.211 kb on + strand, within OH686_04180at 864.212 kb on - strand, within OH686_04180at 864.212 kb on - strand, within OH686_04180at 864.212 kb on - strand, within OH686_04180at 864.212 kb on - strand, within OH686_04180at 864.212 kb on - strand, within OH686_04180at 864.212 kb on - strand, within OH686_04180at 864.212 kb on - strand, within OH686_04180at 864.212 kb on - strand, within OH686_04180at 864.223 kb on + strand, within OH686_04180at 864.262 kb on + strand, within OH686_04180at 864.262 kb on + strand, within OH686_04180at 864.262 kb on + strand, within OH686_04180at 864.262 kb on + strand, within OH686_04180at 864.262 kb on + strand, within OH686_04180at 864.262 kb on + strand, within OH686_04180at 864.262 kb on + strand, within OH686_04180at 864.262 kb on + strand, within OH686_04180at 864.263 kb on - strand, within OH686_04180at 864.263 kb on - strand, within OH686_04180at 864.263 kb on - strand, within OH686_04180at 864.322 kb on + strand, within OH686_04180at 864.322 kb on + strand, within OH686_04180at 864.322 kb on + strand, within OH686_04180at 864.322 kb on + strand, within OH686_04180at 864.322 kb on + strand, within OH686_04180at 864.322 kb on + strand, within OH686_04180at 864.322 kb on + strand, within OH686_04180at 864.323 kb on - strand, within OH686_04180at 864.323 kb on - strand, within OH686_04180at 864.323 kb on - strand, within OH686_04180at 864.323 kb on - strand, within OH686_04180at 864.323 kb on - strand, within OH686_04180at 864.323 kb on - strand, within OH686_04180at 864.323 kb on - strand, within OH686_04180at 864.421 kb on + strand, within OH686_04180at 864.421 kb on + strand, within OH686_04180at 864.421 kb on + strand, within OH686_04180at 864.421 kb on + strand, within OH686_04180at 864.421 kb on + strand, within OH686_04180at 864.421 kb on + strand, within OH686_04180at 864.422 kb on - strand, within OH686_04180at 864.422 kb on - strand, within OH686_04180at 864.422 kb on - strand, within OH686_04180at 864.422 kb on - strand, within OH686_04180at 864.422 kb on - strand, within OH686_04180at 864.422 kb on - strand, within OH686_04180at 864.439 kb on + strand, within OH686_04180at 864.439 kb on + strand, within OH686_04180at 864.439 kb on + strand, within OH686_04180at 864.439 kb on + strand, within OH686_04180at 864.440 kb on - strand, within OH686_04180at 864.440 kb on - strand, within OH686_04180at 864.440 kb on - strand, within OH686_04180at 864.440 kb on - strand, within OH686_04180at 864.440 kb on - strand, within OH686_04180at 864.560 kb on + strand, within OH686_04180at 864.628 kb on + strand, within OH686_04180at 864.628 kb on + strand, within OH686_04180at 864.628 kb on + strand, within OH686_04180at 864.628 kb on + strand, within OH686_04180at 864.628 kb on + strand, within OH686_04180at 864.629 kb on - strand, within OH686_04180at 864.629 kb on - strand, within OH686_04180at 864.629 kb on - strand, within OH686_04180at 864.629 kb on - strand, within OH686_04180at 864.629 kb on - strand, within OH686_04180at 864.629 kb on - strand, within OH686_04180at 864.629 kb on - strand, within OH686_04180at 864.629 kb on - strand, within OH686_04180at 864.650 kb on - strand, within OH686_04180at 864.650 kb on - strand, within OH686_04180at 864.859 kb on - strandat 864.867 kb on - strand, within OH686_04185at 864.992 kb on + strand, within OH686_04185at 864.992 kb on + strand, within OH686_04185at 864.992 kb on + strand, within OH686_04185at 865.318 kb on + strandat 865.318 kb on + strandat 865.319 kb on - strandat 865.389 kb on + strandat 865.390 kb on - strandat 865.476 kb on + strandat 865.477 kb on - strandat 865.477 kb on - strandat 865.557 kb on + strand, within OH686_04190at 865.558 kb on - strand, within OH686_04190at 865.558 kb on - strand, within OH686_04190at 865.558 kb on - strand, within OH686_04190at 865.558 kb on - strand, within OH686_04190at 865.558 kb on - strand, within OH686_04190at 865.626 kb on + strand, within OH686_04190at 865.626 kb on + strand, within OH686_04190at 865.627 kb on - strand, within OH686_04190at 865.650 kb on + strand, within OH686_04190at 865.650 kb on + strand, within OH686_04190at 865.650 kb on + strand, within OH686_04190at 865.650 kb on + strand, within OH686_04190at 865.650 kb on + strand, within OH686_04190at 865.650 kb on + strand, within OH686_04190at 865.650 kb on + strand, within OH686_04190at 865.650 kb on + strand, within OH686_04190at 865.651 kb on - strand, within OH686_04190at 865.651 kb on - strand, within OH686_04190at 865.651 kb on - strand, within OH686_04190at 865.668 kb on - strand, within OH686_04190at 865.668 kb on - strand, within OH686_04190at 865.687 kb on + strand, within OH686_04190at 865.687 kb on + strand, within OH686_04190at 865.687 kb on + strand, within OH686_04190at 865.688 kb on - strand, within OH686_04190at 865.872 kb on + strand, within OH686_04190at 865.873 kb on - strand, within OH686_04190at 866.085 kb on + strand, within OH686_04190at 866.085 kb on + strand, within OH686_04190at 866.085 kb on + strand, within OH686_04190at 866.085 kb on + strand, within OH686_04190at 866.085 kb on + strand, within OH686_04190at 866.085 kb on + strand, within OH686_04190at 866.086 kb on - strand, within OH686_04190at 866.086 kb on - strand, within OH686_04190at 866.086 kb on - strand, within OH686_04190at 866.086 kb on - strand, within OH686_04190at 866.086 kb on - strand, within OH686_04190at 866.086 kb on - strand, within OH686_04190at 866.210 kb on + strand, within OH686_04190at 866.221 kb on - strand, within OH686_04190at 866.259 kb on + strand, within OH686_04190at 866.260 kb on - strand, within OH686_04190at 866.260 kb on - strand, within OH686_04190at 866.262 kb on + strand, within OH686_04190

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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863,841 + -1.0
864,185 - OH686_04180 0.36 -0.3
864,211 + OH686_04180 0.39 +0.4
864,211 + OH686_04180 0.39 +0.1
864,211 + OH686_04180 0.39 +0.2
864,212 - OH686_04180 0.39 +0.7
864,212 - OH686_04180 0.39 +0.0
864,212 - OH686_04180 0.39 -0.0
864,212 - OH686_04180 0.39 -1.1
864,212 - OH686_04180 0.39 +0.4
864,212 - OH686_04180 0.39 -0.2
864,212 - OH686_04180 0.39 +0.2
864,212 - OH686_04180 0.39 +0.0
864,223 + OH686_04180 0.40 +0.6
864,262 + OH686_04180 0.44 -0.5
864,262 + OH686_04180 0.44 -0.5
864,262 + OH686_04180 0.44 -0.2
864,262 + OH686_04180 0.44 +0.3
864,262 + OH686_04180 0.44 +0.7
864,262 + OH686_04180 0.44 +0.4
864,262 + OH686_04180 0.44 +0.0
864,262 + OH686_04180 0.44 +0.6
864,263 - OH686_04180 0.44 -1.2
864,263 - OH686_04180 0.44 +0.1
864,263 - OH686_04180 0.44 +0.9
864,322 + OH686_04180 0.50 +0.6
864,322 + OH686_04180 0.50 -0.9
864,322 + OH686_04180 0.50 +0.5
864,322 + OH686_04180 0.50 +0.8
864,322 + OH686_04180 0.50 -0.6
864,322 + OH686_04180 0.50 -0.0
864,322 + OH686_04180 0.50 +0.1
864,323 - OH686_04180 0.51 +0.2
864,323 - OH686_04180 0.51 -0.2
864,323 - OH686_04180 0.51 -1.0
864,323 - OH686_04180 0.51 +0.4
864,323 - OH686_04180 0.51 -0.3
864,323 - OH686_04180 0.51 -0.5
864,323 - OH686_04180 0.51 +0.5
864,421 + OH686_04180 0.61 +0.4
864,421 + OH686_04180 0.61 +0.1
864,421 + OH686_04180 0.61 +0.4
864,421 + OH686_04180 0.61 -0.6
864,421 + OH686_04180 0.61 +0.5
864,421 + OH686_04180 0.61 -0.1
864,422 - OH686_04180 0.61 -0.1
864,422 - OH686_04180 0.61 +1.6
864,422 - OH686_04180 0.61 -0.1
864,422 - OH686_04180 0.61 -0.8
864,422 - OH686_04180 0.61 -0.7
864,422 - OH686_04180 0.61 +0.7
864,439 + OH686_04180 0.63 +0.0
864,439 + OH686_04180 0.63 -0.7
864,439 + OH686_04180 0.63 -0.1
864,439 + OH686_04180 0.63 +0.5
864,440 - OH686_04180 0.63 +0.1
864,440 - OH686_04180 0.63 -0.5
864,440 - OH686_04180 0.63 +0.1
864,440 - OH686_04180 0.63 +0.4
864,440 - OH686_04180 0.63 -0.6
864,560 + OH686_04180 0.75 -0.2
864,628 + OH686_04180 0.82 -0.0
864,628 + OH686_04180 0.82 +0.8
864,628 + OH686_04180 0.82 -1.1
864,628 + OH686_04180 0.82 -0.3
864,628 + OH686_04180 0.82 +0.3
864,629 - OH686_04180 0.82 +0.1
864,629 - OH686_04180 0.82 -0.9
864,629 - OH686_04180 0.82 -1.8
864,629 - OH686_04180 0.82 +0.7
864,629 - OH686_04180 0.82 +0.4
864,629 - OH686_04180 0.82 +0.1
864,629 - OH686_04180 0.82 -0.7
864,629 - OH686_04180 0.82 +0.4
864,650 - OH686_04180 0.84 -0.3
864,650 - OH686_04180 0.84 +1.1
864,859 - +0.1
864,867 - OH686_04185 0.11 +0.2
864,992 + OH686_04185 0.37 +1.3
864,992 + OH686_04185 0.37 +0.6
864,992 + OH686_04185 0.37 +0.4
865,318 + -0.2
865,318 + -0.7
865,319 - -0.9
865,389 + +0.5
865,390 - +0.2
865,476 + -1.2
865,477 - +0.7
865,477 - -0.5
865,557 + OH686_04190 0.14 -1.0
865,558 - OH686_04190 0.14 -0.1
865,558 - OH686_04190 0.14 +0.2
865,558 - OH686_04190 0.14 -0.6
865,558 - OH686_04190 0.14 +0.3
865,558 - OH686_04190 0.14 -0.6
865,626 + OH686_04190 0.19 -1.1
865,626 + OH686_04190 0.19 -0.7
865,627 - OH686_04190 0.19 +0.5
865,650 + OH686_04190 0.20 +0.5
865,650 + OH686_04190 0.20 -0.3
865,650 + OH686_04190 0.20 -2.1
865,650 + OH686_04190 0.20 -0.4
865,650 + OH686_04190 0.20 +0.7
865,650 + OH686_04190 0.20 -0.3
865,650 + OH686_04190 0.20 -0.3
865,650 + OH686_04190 0.20 -0.5
865,651 - OH686_04190 0.20 +0.7
865,651 - OH686_04190 0.20 +0.6
865,651 - OH686_04190 0.20 +0.1
865,668 - OH686_04190 0.21 -0.3
865,668 - OH686_04190 0.21 +0.7
865,687 + OH686_04190 0.23 +0.7
865,687 + OH686_04190 0.23 -0.1
865,687 + OH686_04190 0.23 -0.0
865,688 - OH686_04190 0.23 +0.4
865,872 + OH686_04190 0.35 +0.0
865,873 - OH686_04190 0.35 -0.1
866,085 + OH686_04190 0.49 -1.2
866,085 + OH686_04190 0.49 -0.1
866,085 + OH686_04190 0.49 +0.4
866,085 + OH686_04190 0.49 +0.6
866,085 + OH686_04190 0.49 +1.1
866,085 + OH686_04190 0.49 +0.2
866,086 - OH686_04190 0.49 -0.4
866,086 - OH686_04190 0.49 -1.0
866,086 - OH686_04190 0.49 -0.4
866,086 - OH686_04190 0.49 +0.3
866,086 - OH686_04190 0.49 +0.4
866,086 - OH686_04190 0.49 +0.8
866,210 + OH686_04190 0.57 -1.7
866,221 - OH686_04190 0.58 +0.3
866,259 + OH686_04190 0.61 +0.3
866,260 - OH686_04190 0.61 -0.6
866,260 - OH686_04190 0.61 -1.3
866,262 + OH686_04190 0.61 -0.2

Or see this region's nucleotide sequence