Strain Fitness in Pseudomonas sp. S08-1 around OH686_03250

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_03245 and OH686_03250 are separated by 33 nucleotidesOH686_03250 and OH686_03255 are separated by 5 nucleotidesOH686_03255 and OH686_03260 are separated by 5 nucleotides OH686_03245: OH686_03245 - Transcriptional regulator, AraC family, at 676,694 to 677,677 _03245 OH686_03250: OH686_03250 - hypothetical protein, at 677,711 to 677,959 _03250 OH686_03255: OH686_03255 - Putative membrane-spanning protein, at 677,965 to 678,474 _03255 OH686_03260: OH686_03260 - Uncharacterized MFS-type transporter, at 678,480 to 679,658 _03260 Position (kb) 677 678Strain fitness (log2 ratio) -2 -1 0 1 2 3at 676.718 kb on + strandat 676.718 kb on + strandat 676.718 kb on + strandat 676.719 kb on - strandat 676.719 kb on - strandat 676.719 kb on - strandat 676.761 kb on + strandat 676.761 kb on + strandat 676.761 kb on + strandat 676.761 kb on + strandat 676.762 kb on - strandat 676.762 kb on - strandat 676.812 kb on - strand, within OH686_03245at 677.152 kb on + strand, within OH686_03245at 677.152 kb on + strand, within OH686_03245at 677.152 kb on + strand, within OH686_03245at 677.152 kb on + strand, within OH686_03245at 677.152 kb on + strand, within OH686_03245at 677.152 kb on + strand, within OH686_03245at 677.153 kb on - strand, within OH686_03245at 677.153 kb on - strand, within OH686_03245at 677.153 kb on - strand, within OH686_03245at 677.153 kb on - strand, within OH686_03245at 677.153 kb on - strand, within OH686_03245at 677.156 kb on + strand, within OH686_03245at 677.156 kb on + strand, within OH686_03245at 677.156 kb on + strand, within OH686_03245at 677.156 kb on + strand, within OH686_03245at 677.156 kb on + strand, within OH686_03245at 677.156 kb on + strand, within OH686_03245at 677.156 kb on + strand, within OH686_03245at 677.157 kb on - strand, within OH686_03245at 677.157 kb on - strand, within OH686_03245at 677.157 kb on - strand, within OH686_03245at 677.157 kb on - strand, within OH686_03245at 677.157 kb on - strand, within OH686_03245at 677.157 kb on - strand, within OH686_03245at 677.507 kb on + strand, within OH686_03245at 677.507 kb on + strand, within OH686_03245at 677.508 kb on - strand, within OH686_03245at 677.508 kb on - strand, within OH686_03245at 677.658 kb on - strandat 677.658 kb on - strandat 677.658 kb on - strandat 677.877 kb on + strand, within OH686_03250at 677.975 kb on + strandat 677.976 kb on - strandat 677.976 kb on - strandat 677.976 kb on - strandat 677.976 kb on - strandat 677.976 kb on - strandat 677.976 kb on - strandat 677.976 kb on - strandat 677.976 kb on - strandat 677.976 kb on - strandat 677.978 kb on + strandat 677.978 kb on + strandat 677.978 kb on + strandat 677.978 kb on + strandat 677.978 kb on + strandat 677.978 kb on + strandat 677.978 kb on + strandat 677.978 kb on + strandat 677.979 kb on - strandat 677.979 kb on - strandat 677.979 kb on - strandat 677.979 kb on - strandat 678.430 kb on + strandat 678.430 kb on + strandat 678.430 kb on + strandat 678.430 kb on + strandat 678.431 kb on - strandat 678.431 kb on - strandat 678.431 kb on - strandat 678.431 kb on - strandat 678.431 kb on - strandat 678.431 kb on - strandat 678.448 kb on - strandat 678.458 kb on - strandat 678.466 kb on + strandat 678.466 kb on + strandat 678.466 kb on + strandat 678.466 kb on + strandat 678.466 kb on + strandat 678.466 kb on + strandat 678.466 kb on + strandat 678.467 kb on - strandat 678.467 kb on - strandat 678.467 kb on - strandat 678.467 kb on - strandat 678.467 kb on - strandat 678.467 kb on - strandat 678.467 kb on - strandat 678.467 kb on - strandat 678.643 kb on - strand, within OH686_03260at 678.643 kb on - strand, within OH686_03260at 678.810 kb on + strand, within OH686_03260at 678.811 kb on - strand, within OH686_03260at 678.828 kb on + strand, within OH686_03260at 678.828 kb on + strand, within OH686_03260at 678.828 kb on + strand, within OH686_03260at 678.828 kb on + strand, within OH686_03260at 678.828 kb on + strand, within OH686_03260at 678.828 kb on + strand, within OH686_03260at 678.828 kb on + strand, within OH686_03260at 678.828 kb on + strand, within OH686_03260at 678.828 kb on + strand, within OH686_03260at 678.828 kb on + strand, within OH686_03260at 678.828 kb on + strand, within OH686_03260at 678.828 kb on + strand, within OH686_03260at 678.828 kb on + strand, within OH686_03260at 678.828 kb on + strand, within OH686_03260at 678.828 kb on + strand, within OH686_03260at 678.828 kb on + strand, within OH686_03260at 678.828 kb on + strand, within OH686_03260at 678.828 kb on + strand, within OH686_03260at 678.828 kb on + strand, within OH686_03260at 678.828 kb on + strand, within OH686_03260at 678.828 kb on + strand, within OH686_03260at 678.828 kb on + strand, within OH686_03260at 678.829 kb on - strand, within OH686_03260at 678.829 kb on - strand, within OH686_03260at 678.829 kb on - strand, within OH686_03260at 678.829 kb on - strand, within OH686_03260at 678.829 kb on - strand, within OH686_03260at 678.829 kb on - strand, within OH686_03260at 678.829 kb on - strand, within OH686_03260at 678.829 kb on - strand, within OH686_03260at 678.829 kb on - strand, within OH686_03260at 678.829 kb on - strand, within OH686_03260at 678.829 kb on - strand, within OH686_03260at 678.829 kb on - strand, within OH686_03260at 678.829 kb on - strand, within OH686_03260at 678.831 kb on + strand, within OH686_03260at 678.832 kb on - strand, within OH686_03260

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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676,718 + -1.6
676,718 + +1.1
676,718 + -0.9
676,719 - +0.2
676,719 - -0.2
676,719 - +0.8
676,761 + -0.7
676,761 + +0.4
676,761 + -0.3
676,761 + -1.7
676,762 - -0.6
676,762 - +0.4
676,812 - OH686_03245 0.12 -1.0
677,152 + OH686_03245 0.47 -0.3
677,152 + OH686_03245 0.47 -0.7
677,152 + OH686_03245 0.47 -0.1
677,152 + OH686_03245 0.47 +2.4
677,152 + OH686_03245 0.47 +0.0
677,152 + OH686_03245 0.47 -1.5
677,153 - OH686_03245 0.47 +0.0
677,153 - OH686_03245 0.47 +3.1
677,153 - OH686_03245 0.47 -0.5
677,153 - OH686_03245 0.47 -0.8
677,153 - OH686_03245 0.47 -0.1
677,156 + OH686_03245 0.47 -0.0
677,156 + OH686_03245 0.47 +0.1
677,156 + OH686_03245 0.47 +0.4
677,156 + OH686_03245 0.47 -0.7
677,156 + OH686_03245 0.47 -0.2
677,156 + OH686_03245 0.47 -0.3
677,156 + OH686_03245 0.47 +0.7
677,157 - OH686_03245 0.47 +0.5
677,157 - OH686_03245 0.47 +0.2
677,157 - OH686_03245 0.47 +1.3
677,157 - OH686_03245 0.47 +0.8
677,157 - OH686_03245 0.47 -1.1
677,157 - OH686_03245 0.47 -0.5
677,507 + OH686_03245 0.83 -1.3
677,507 + OH686_03245 0.83 +1.7
677,508 - OH686_03245 0.83 +0.8
677,508 - OH686_03245 0.83 +0.8
677,658 - -1.1
677,658 - +1.8
677,658 - -1.3
677,877 + OH686_03250 0.67 -0.5
677,975 + -0.4
677,976 - -1.7
677,976 - +0.2
677,976 - -0.2
677,976 - -0.6
677,976 - +0.5
677,976 - +0.3
677,976 - -0.2
677,976 - +0.5
677,976 - -0.5
677,978 + -0.3
677,978 + +0.1
677,978 + -0.3
677,978 + -0.3
677,978 + -0.4
677,978 + -0.2
677,978 + +0.4
677,978 + +0.2
677,979 - -0.9
677,979 - +0.1
677,979 - -0.5
677,979 - -1.4
678,430 + -1.0
678,430 + -1.0
678,430 + -0.5
678,430 + +0.4
678,431 - +0.1
678,431 - +0.5
678,431 - +0.3
678,431 - +0.7
678,431 - -1.6
678,431 - +1.0
678,448 - -0.3
678,458 - +0.2
678,466 + +1.0
678,466 + +0.8
678,466 + -0.1
678,466 + -0.1
678,466 + +1.1
678,466 + -0.3
678,466 + -0.7
678,467 - +0.8
678,467 - -0.4
678,467 - +0.8
678,467 - +0.8
678,467 - +0.9
678,467 - -0.5
678,467 - -0.8
678,467 - -0.3
678,643 - OH686_03260 0.14 -0.5
678,643 - OH686_03260 0.14 -0.5
678,810 + OH686_03260 0.28 -1.9
678,811 - OH686_03260 0.28 +0.1
678,828 + OH686_03260 0.30 +0.5
678,828 + OH686_03260 0.30 +0.1
678,828 + OH686_03260 0.30 -0.0
678,828 + OH686_03260 0.30 -0.1
678,828 + OH686_03260 0.30 -0.2
678,828 + OH686_03260 0.30 -0.7
678,828 + OH686_03260 0.30 +1.3
678,828 + OH686_03260 0.30 +0.5
678,828 + OH686_03260 0.30 +0.0
678,828 + OH686_03260 0.30 +1.2
678,828 + OH686_03260 0.30 +0.6
678,828 + OH686_03260 0.30 +0.8
678,828 + OH686_03260 0.30 +0.7
678,828 + OH686_03260 0.30 +0.2
678,828 + OH686_03260 0.30 -1.5
678,828 + OH686_03260 0.30 -0.8
678,828 + OH686_03260 0.30 +0.5
678,828 + OH686_03260 0.30 -0.5
678,828 + OH686_03260 0.30 -0.9
678,828 + OH686_03260 0.30 +0.0
678,828 + OH686_03260 0.30 -0.2
678,828 + OH686_03260 0.30 +1.8
678,829 - OH686_03260 0.30 +0.4
678,829 - OH686_03260 0.30 -1.3
678,829 - OH686_03260 0.30 -0.4
678,829 - OH686_03260 0.30 +0.5
678,829 - OH686_03260 0.30 +0.6
678,829 - OH686_03260 0.30 +0.2
678,829 - OH686_03260 0.30 +0.7
678,829 - OH686_03260 0.30 -0.1
678,829 - OH686_03260 0.30 +0.2
678,829 - OH686_03260 0.30 +0.7
678,829 - OH686_03260 0.30 +0.2
678,829 - OH686_03260 0.30 +0.1
678,829 - OH686_03260 0.30 -0.3
678,831 + OH686_03260 0.30 +0.2
678,832 - OH686_03260 0.30 -1.4

Or see this region's nucleotide sequence