Strain Fitness in Serratia liquefaciens MT49 around IAI46_24605

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24600 and IAI46_24605 are separated by 131 nucleotidesIAI46_24605 and IAI46_24610 are separated by 238 nucleotides IAI46_24600: IAI46_24600 - glycerol kinase GlpK, at 5,253,395 to 5,254,903 _24600 IAI46_24605: IAI46_24605 - class II fructose-bisphosphatase, at 5,255,035 to 5,256,045 _24605 IAI46_24610: IAI46_24610 - multidrug efflux MFS transporter EmrD, at 5,256,284 to 5,257,468 _24610 Position (kb) 5255 5256 5257Strain fitness (log2 ratio) -2 -1 0 1 2at 5254.070 kb on + strand, within IAI46_24600at 5254.071 kb on - strand, within IAI46_24600at 5254.108 kb on + strand, within IAI46_24600at 5254.108 kb on + strand, within IAI46_24600at 5254.108 kb on + strand, within IAI46_24600at 5254.108 kb on + strand, within IAI46_24600at 5254.109 kb on - strand, within IAI46_24600at 5254.193 kb on + strand, within IAI46_24600at 5254.298 kb on + strand, within IAI46_24600at 5254.299 kb on - strand, within IAI46_24600at 5254.336 kb on + strand, within IAI46_24600at 5254.391 kb on + strand, within IAI46_24600at 5254.427 kb on + strand, within IAI46_24600at 5254.427 kb on + strand, within IAI46_24600at 5254.427 kb on + strand, within IAI46_24600at 5254.428 kb on - strand, within IAI46_24600at 5254.428 kb on - strand, within IAI46_24600at 5254.463 kb on + strand, within IAI46_24600at 5254.476 kb on - strand, within IAI46_24600at 5254.556 kb on + strand, within IAI46_24600at 5254.557 kb on - strand, within IAI46_24600at 5254.837 kb on + strandat 5254.838 kb on - strandat 5254.838 kb on - strandat 5254.989 kb on + strandat 5254.989 kb on + strandat 5255.049 kb on - strandat 5255.049 kb on - strandat 5255.070 kb on + strandat 5255.160 kb on + strand, within IAI46_24605at 5255.160 kb on + strand, within IAI46_24605at 5255.161 kb on - strand, within IAI46_24605at 5255.233 kb on + strand, within IAI46_24605at 5255.233 kb on + strand, within IAI46_24605at 5255.233 kb on + strand, within IAI46_24605at 5255.233 kb on + strand, within IAI46_24605at 5255.233 kb on + strand, within IAI46_24605at 5255.233 kb on + strand, within IAI46_24605at 5255.233 kb on + strand, within IAI46_24605at 5255.234 kb on - strand, within IAI46_24605at 5255.234 kb on - strand, within IAI46_24605at 5255.302 kb on - strand, within IAI46_24605at 5255.302 kb on - strand, within IAI46_24605at 5255.343 kb on - strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.391 kb on + strand, within IAI46_24605at 5255.439 kb on + strand, within IAI46_24605at 5255.466 kb on + strand, within IAI46_24605at 5255.467 kb on - strand, within IAI46_24605at 5255.577 kb on - strand, within IAI46_24605at 5255.577 kb on - strand, within IAI46_24605at 5255.600 kb on + strand, within IAI46_24605at 5255.600 kb on + strand, within IAI46_24605at 5255.610 kb on + strand, within IAI46_24605at 5255.610 kb on + strand, within IAI46_24605at 5255.610 kb on + strand, within IAI46_24605at 5255.610 kb on + strand, within IAI46_24605at 5255.622 kb on + strand, within IAI46_24605at 5255.622 kb on + strand, within IAI46_24605at 5255.623 kb on - strand, within IAI46_24605at 5255.623 kb on - strand, within IAI46_24605at 5255.650 kb on + strand, within IAI46_24605at 5255.651 kb on - strand, within IAI46_24605at 5255.716 kb on - strand, within IAI46_24605at 5255.775 kb on + strand, within IAI46_24605at 5255.932 kb on - strand, within IAI46_24605at 5255.976 kb on + strandat 5255.976 kb on + strandat 5256.043 kb on + strandat 5256.043 kb on + strandat 5256.182 kb on + strandat 5256.228 kb on + strandat 5256.229 kb on - strandat 5256.239 kb on - strandat 5256.239 kb on - strandat 5256.293 kb on - strandat 5256.341 kb on + strandat 5256.445 kb on + strand, within IAI46_24610at 5256.445 kb on + strand, within IAI46_24610at 5256.446 kb on - strand, within IAI46_24610at 5256.655 kb on + strand, within IAI46_24610at 5256.655 kb on + strand, within IAI46_24610at 5256.655 kb on + strand, within IAI46_24610at 5256.656 kb on - strand, within IAI46_24610at 5256.656 kb on - strand, within IAI46_24610at 5256.656 kb on - strand, within IAI46_24610at 5256.685 kb on - strand, within IAI46_24610at 5256.722 kb on - strand, within IAI46_24610at 5256.834 kb on + strand, within IAI46_24610at 5256.834 kb on + strand, within IAI46_24610at 5256.834 kb on + strand, within IAI46_24610at 5256.834 kb on + strand, within IAI46_24610at 5256.834 kb on + strand, within IAI46_24610at 5256.835 kb on - strand, within IAI46_24610at 5256.883 kb on + strand, within IAI46_24610at 5256.883 kb on + strand, within IAI46_24610at 5256.884 kb on - strand, within IAI46_24610at 5256.884 kb on - strand, within IAI46_24610at 5256.884 kb on - strand, within IAI46_24610at 5256.959 kb on + strand, within IAI46_24610at 5256.959 kb on + strand, within IAI46_24610at 5256.959 kb on + strand, within IAI46_24610at 5256.959 kb on + strand, within IAI46_24610at 5256.960 kb on - strand, within IAI46_24610at 5256.960 kb on - strand, within IAI46_24610at 5256.960 kb on - strand, within IAI46_24610at 5256.976 kb on - strand, within IAI46_24610

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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5,254,070 + IAI46_24600 0.45 +0.1
5,254,071 - IAI46_24600 0.45 +0.4
5,254,108 + IAI46_24600 0.47 +0.6
5,254,108 + IAI46_24600 0.47 -0.1
5,254,108 + IAI46_24600 0.47 +0.2
5,254,108 + IAI46_24600 0.47 +0.7
5,254,109 - IAI46_24600 0.47 -0.4
5,254,193 + IAI46_24600 0.53 -0.1
5,254,298 + IAI46_24600 0.60 +0.4
5,254,299 - IAI46_24600 0.60 +0.6
5,254,336 + IAI46_24600 0.62 +0.2
5,254,391 + IAI46_24600 0.66 -2.1
5,254,427 + IAI46_24600 0.68 -0.1
5,254,427 + IAI46_24600 0.68 +0.2
5,254,427 + IAI46_24600 0.68 +0.2
5,254,428 - IAI46_24600 0.68 -0.2
5,254,428 - IAI46_24600 0.68 +0.3
5,254,463 + IAI46_24600 0.71 -0.1
5,254,476 - IAI46_24600 0.72 +1.3
5,254,556 + IAI46_24600 0.77 +0.4
5,254,557 - IAI46_24600 0.77 +1.5
5,254,837 + -0.0
5,254,838 - +0.7
5,254,838 - -0.5
5,254,989 + +0.0
5,254,989 + -0.4
5,255,049 - +0.4
5,255,049 - +0.7
5,255,070 + +0.8
5,255,160 + IAI46_24605 0.12 +0.7
5,255,160 + IAI46_24605 0.12 -0.5
5,255,161 - IAI46_24605 0.12 +0.2
5,255,233 + IAI46_24605 0.20 +0.4
5,255,233 + IAI46_24605 0.20 +0.8
5,255,233 + IAI46_24605 0.20 +0.4
5,255,233 + IAI46_24605 0.20 +0.6
5,255,233 + IAI46_24605 0.20 +0.4
5,255,233 + IAI46_24605 0.20 -0.2
5,255,233 + IAI46_24605 0.20 +0.9
5,255,234 - IAI46_24605 0.20 +0.2
5,255,234 - IAI46_24605 0.20 -0.4
5,255,302 - IAI46_24605 0.26 +0.4
5,255,302 - IAI46_24605 0.26 +0.7
5,255,343 - IAI46_24605 0.30 +0.1
5,255,389 + IAI46_24605 0.35 +0.2
5,255,389 + IAI46_24605 0.35 +0.6
5,255,389 + IAI46_24605 0.35 -0.0
5,255,389 + IAI46_24605 0.35 +0.4
5,255,389 + IAI46_24605 0.35 +0.4
5,255,389 + IAI46_24605 0.35 +0.5
5,255,389 + IAI46_24605 0.35 +0.7
5,255,389 + IAI46_24605 0.35 +0.1
5,255,389 + IAI46_24605 0.35 +1.8
5,255,389 + IAI46_24605 0.35 +1.5
5,255,389 + IAI46_24605 0.35 +0.7
5,255,389 + IAI46_24605 0.35 -0.2
5,255,389 + IAI46_24605 0.35 +0.2
5,255,389 + IAI46_24605 0.35 +0.2
5,255,389 + IAI46_24605 0.35 +0.8
5,255,389 + IAI46_24605 0.35 -0.1
5,255,389 + IAI46_24605 0.35 +0.3
5,255,389 + IAI46_24605 0.35 -0.5
5,255,389 + IAI46_24605 0.35 -0.0
5,255,390 - IAI46_24605 0.35 +0.2
5,255,390 - IAI46_24605 0.35 -0.2
5,255,390 - IAI46_24605 0.35 -0.5
5,255,390 - IAI46_24605 0.35 +0.1
5,255,390 - IAI46_24605 0.35 +0.5
5,255,390 - IAI46_24605 0.35 -0.0
5,255,390 - IAI46_24605 0.35 +0.5
5,255,390 - IAI46_24605 0.35 +0.6
5,255,390 - IAI46_24605 0.35 -0.3
5,255,390 - IAI46_24605 0.35 -0.7
5,255,390 - IAI46_24605 0.35 -0.6
5,255,390 - IAI46_24605 0.35 +0.2
5,255,390 - IAI46_24605 0.35 +1.1
5,255,390 - IAI46_24605 0.35 -0.8
5,255,391 + IAI46_24605 0.35 -0.1
5,255,439 + IAI46_24605 0.40 -0.1
5,255,466 + IAI46_24605 0.43 -0.8
5,255,467 - IAI46_24605 0.43 -2.3
5,255,577 - IAI46_24605 0.54 -0.2
5,255,577 - IAI46_24605 0.54 -1.5
5,255,600 + IAI46_24605 0.56 +1.2
5,255,600 + IAI46_24605 0.56 -0.2
5,255,610 + IAI46_24605 0.57 -0.1
5,255,610 + IAI46_24605 0.57 -0.3
5,255,610 + IAI46_24605 0.57 -0.2
5,255,610 + IAI46_24605 0.57 -0.0
5,255,622 + IAI46_24605 0.58 +0.0
5,255,622 + IAI46_24605 0.58 +0.6
5,255,623 - IAI46_24605 0.58 -0.2
5,255,623 - IAI46_24605 0.58 +0.3
5,255,650 + IAI46_24605 0.61 +0.2
5,255,651 - IAI46_24605 0.61 -0.5
5,255,716 - IAI46_24605 0.67 +0.3
5,255,775 + IAI46_24605 0.73 +0.7
5,255,932 - IAI46_24605 0.89 -0.5
5,255,976 + +0.1
5,255,976 + +0.4
5,256,043 + -0.4
5,256,043 + -0.3
5,256,182 + +0.0
5,256,228 + +0.5
5,256,229 - -0.1
5,256,239 - -0.7
5,256,239 - -0.5
5,256,293 - +0.7
5,256,341 + +1.7
5,256,445 + IAI46_24610 0.14 +1.1
5,256,445 + IAI46_24610 0.14 +0.1
5,256,446 - IAI46_24610 0.14 +0.3
5,256,655 + IAI46_24610 0.31 +0.2
5,256,655 + IAI46_24610 0.31 +0.4
5,256,655 + IAI46_24610 0.31 +0.3
5,256,656 - IAI46_24610 0.31 -0.6
5,256,656 - IAI46_24610 0.31 -1.5
5,256,656 - IAI46_24610 0.31 +0.3
5,256,685 - IAI46_24610 0.34 +0.2
5,256,722 - IAI46_24610 0.37 +1.3
5,256,834 + IAI46_24610 0.46 -0.9
5,256,834 + IAI46_24610 0.46 +0.1
5,256,834 + IAI46_24610 0.46 +0.4
5,256,834 + IAI46_24610 0.46 +0.2
5,256,834 + IAI46_24610 0.46 +0.3
5,256,835 - IAI46_24610 0.46 -0.9
5,256,883 + IAI46_24610 0.51 -0.2
5,256,883 + IAI46_24610 0.51 -0.2
5,256,884 - IAI46_24610 0.51 +0.2
5,256,884 - IAI46_24610 0.51 -0.1
5,256,884 - IAI46_24610 0.51 +0.5
5,256,959 + IAI46_24610 0.57 +0.6
5,256,959 + IAI46_24610 0.57 +0.5
5,256,959 + IAI46_24610 0.57 +1.8
5,256,959 + IAI46_24610 0.57 -0.7
5,256,960 - IAI46_24610 0.57 -0.6
5,256,960 - IAI46_24610 0.57 +0.3
5,256,960 - IAI46_24610 0.57 +0.3
5,256,976 - IAI46_24610 0.58 -0.6

Or see this region's nucleotide sequence