Strain Fitness in Serratia liquefaciens MT49 around IAI46_24560

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24555 and IAI46_24560 are separated by 288 nucleotidesIAI46_24560 and IAI46_24565 are separated by 65 nucleotides IAI46_24555: IAI46_24555 - primosomal protein N', at 5,243,596 to 5,245,791 _24555 IAI46_24560: IAI46_24560 - DNA-binding transcriptional regulator CytR, at 5,246,080 to 5,247,108 _24560 IAI46_24565: IAI46_24565 - cell division protein FtsN, at 5,247,174 to 5,248,115 _24565 Position (kb) 5246 5247 5248Strain fitness (log2 ratio) -2 -1 0 1 2at 5245.832 kb on + strandat 5245.893 kb on + strandat 5245.893 kb on + strandat 5245.894 kb on - strandat 5245.894 kb on - strandat 5245.894 kb on - strandat 5245.894 kb on - strandat 5245.897 kb on + strandat 5245.898 kb on - strandat 5245.913 kb on + strandat 5245.913 kb on + strandat 5245.913 kb on + strandat 5245.913 kb on + strandat 5245.913 kb on + strandat 5245.914 kb on - strandat 5245.922 kb on + strandat 5245.922 kb on + strandat 5245.999 kb on + strandat 5245.999 kb on + strandat 5245.999 kb on + strandat 5246.000 kb on - strandat 5246.000 kb on - strandat 5246.041 kb on + strandat 5246.041 kb on + strandat 5246.099 kb on + strandat 5246.231 kb on + strand, within IAI46_24560at 5246.231 kb on + strand, within IAI46_24560at 5246.232 kb on - strand, within IAI46_24560at 5246.237 kb on - strand, within IAI46_24560at 5246.237 kb on - strand, within IAI46_24560at 5246.436 kb on + strand, within IAI46_24560at 5246.571 kb on - strand, within IAI46_24560at 5246.612 kb on - strand, within IAI46_24560at 5246.615 kb on + strand, within IAI46_24560at 5246.616 kb on - strand, within IAI46_24560at 5246.616 kb on - strand, within IAI46_24560at 5246.616 kb on - strand, within IAI46_24560at 5246.715 kb on + strand, within IAI46_24560at 5246.724 kb on + strand, within IAI46_24560at 5246.740 kb on + strand, within IAI46_24560at 5246.740 kb on + strand, within IAI46_24560at 5246.740 kb on + strand, within IAI46_24560at 5246.740 kb on + strand, within IAI46_24560at 5246.741 kb on - strand, within IAI46_24560at 5246.741 kb on - strand, within IAI46_24560at 5246.741 kb on - strand, within IAI46_24560at 5246.741 kb on - strand, within IAI46_24560at 5246.741 kb on - strand, within IAI46_24560at 5246.741 kb on - strand, within IAI46_24560at 5246.742 kb on + strand, within IAI46_24560at 5246.742 kb on + strand, within IAI46_24560at 5246.742 kb on + strand, within IAI46_24560at 5246.742 kb on + strand, within IAI46_24560at 5246.742 kb on + strand, within IAI46_24560at 5246.743 kb on - strand, within IAI46_24560at 5246.743 kb on - strand, within IAI46_24560at 5246.743 kb on - strand, within IAI46_24560at 5246.746 kb on - strand, within IAI46_24560at 5246.764 kb on + strand, within IAI46_24560at 5246.764 kb on + strand, within IAI46_24560at 5246.764 kb on + strand, within IAI46_24560at 5246.765 kb on - strand, within IAI46_24560at 5246.795 kb on + strand, within IAI46_24560at 5246.836 kb on - strand, within IAI46_24560at 5246.843 kb on + strand, within IAI46_24560at 5246.928 kb on + strand, within IAI46_24560at 5246.941 kb on + strand, within IAI46_24560at 5246.942 kb on - strand, within IAI46_24560at 5247.075 kb on + strandat 5247.075 kb on + strandat 5247.076 kb on - strandat 5247.106 kb on + strandat 5247.129 kb on + strandat 5247.457 kb on + strand, within IAI46_24565at 5247.591 kb on + strand, within IAI46_24565at 5247.591 kb on + strand, within IAI46_24565at 5247.591 kb on + strand, within IAI46_24565at 5247.593 kb on + strand, within IAI46_24565at 5247.593 kb on + strand, within IAI46_24565at 5247.593 kb on + strand, within IAI46_24565at 5247.756 kb on - strand, within IAI46_24565at 5247.804 kb on - strand, within IAI46_24565at 5247.947 kb on - strand, within IAI46_24565at 5247.984 kb on - strand, within IAI46_24565at 5247.984 kb on - strand, within IAI46_24565at 5248.027 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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5,245,832 + +0.2
5,245,893 + +0.6
5,245,893 + +0.4
5,245,894 - +0.4
5,245,894 - +0.3
5,245,894 - -0.2
5,245,894 - +0.7
5,245,897 + +0.7
5,245,898 - -0.2
5,245,913 + +0.5
5,245,913 + -0.4
5,245,913 + +0.4
5,245,913 + +1.1
5,245,913 + -0.1
5,245,914 - +0.7
5,245,922 + +0.4
5,245,922 + +1.0
5,245,999 + +0.6
5,245,999 + +0.1
5,245,999 + +1.0
5,246,000 - -2.1
5,246,000 - +0.4
5,246,041 + +0.5
5,246,041 + -0.0
5,246,099 + +0.3
5,246,231 + IAI46_24560 0.15 -0.4
5,246,231 + IAI46_24560 0.15 +0.1
5,246,232 - IAI46_24560 0.15 +0.2
5,246,237 - IAI46_24560 0.15 +0.2
5,246,237 - IAI46_24560 0.15 +0.5
5,246,436 + IAI46_24560 0.35 +0.2
5,246,571 - IAI46_24560 0.48 +0.7
5,246,612 - IAI46_24560 0.52 +0.9
5,246,615 + IAI46_24560 0.52 +0.7
5,246,616 - IAI46_24560 0.52 +0.2
5,246,616 - IAI46_24560 0.52 +1.1
5,246,616 - IAI46_24560 0.52 -0.0
5,246,715 + IAI46_24560 0.62 +0.1
5,246,724 + IAI46_24560 0.63 +0.4
5,246,740 + IAI46_24560 0.64 +0.8
5,246,740 + IAI46_24560 0.64 +0.4
5,246,740 + IAI46_24560 0.64 -0.3
5,246,740 + IAI46_24560 0.64 -0.3
5,246,741 - IAI46_24560 0.64 +0.5
5,246,741 - IAI46_24560 0.64 +0.0
5,246,741 - IAI46_24560 0.64 +0.8
5,246,741 - IAI46_24560 0.64 +1.1
5,246,741 - IAI46_24560 0.64 -0.3
5,246,741 - IAI46_24560 0.64 +0.5
5,246,742 + IAI46_24560 0.64 -0.2
5,246,742 + IAI46_24560 0.64 +0.2
5,246,742 + IAI46_24560 0.64 +0.6
5,246,742 + IAI46_24560 0.64 +0.1
5,246,742 + IAI46_24560 0.64 +0.6
5,246,743 - IAI46_24560 0.64 -0.2
5,246,743 - IAI46_24560 0.64 -1.3
5,246,743 - IAI46_24560 0.64 +0.8
5,246,746 - IAI46_24560 0.65 +1.6
5,246,764 + IAI46_24560 0.66 +0.2
5,246,764 + IAI46_24560 0.66 +1.1
5,246,764 + IAI46_24560 0.66 -0.5
5,246,765 - IAI46_24560 0.67 +1.2
5,246,795 + IAI46_24560 0.69 +0.4
5,246,836 - IAI46_24560 0.73 +0.1
5,246,843 + IAI46_24560 0.74 +0.5
5,246,928 + IAI46_24560 0.82 -0.2
5,246,941 + IAI46_24560 0.84 -0.2
5,246,942 - IAI46_24560 0.84 -0.1
5,247,075 + +0.4
5,247,075 + -0.1
5,247,076 - +0.6
5,247,106 + -0.2
5,247,129 + +0.3
5,247,457 + IAI46_24565 0.30 +0.7
5,247,591 + IAI46_24565 0.44 +1.8
5,247,591 + IAI46_24565 0.44 +0.6
5,247,591 + IAI46_24565 0.44 +1.5
5,247,593 + IAI46_24565 0.44 +0.0
5,247,593 + IAI46_24565 0.44 +0.6
5,247,593 + IAI46_24565 0.44 -0.5
5,247,756 - IAI46_24565 0.62 -0.3
5,247,804 - IAI46_24565 0.67 +1.2
5,247,947 - IAI46_24565 0.82 +0.2
5,247,984 - IAI46_24565 0.86 +0.5
5,247,984 - IAI46_24565 0.86 +0.6
5,248,027 - +0.2

Or see this region's nucleotide sequence