Strain Fitness in Serratia liquefaciens MT49 around IAI46_24255

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24250 and IAI46_24255 overlap by 11 nucleotidesIAI46_24255 and IAI46_24260 are separated by 465 nucleotides IAI46_24250: IAI46_24250 - response regulator, at 5,169,759 to 5,171,543 _24250 IAI46_24255: IAI46_24255 - response regulator, at 5,171,533 to 5,172,384 _24255 IAI46_24260: IAI46_24260 - autotransporter outer membrane beta-barrel domain-containing protein, at 5,172,850 to 5,175,951 _24260 Position (kb) 5171 5172 5173Strain fitness (log2 ratio) -1 0 1 2at 5170.612 kb on - strand, within IAI46_24250at 5170.631 kb on + strand, within IAI46_24250at 5170.647 kb on - strand, within IAI46_24250at 5170.762 kb on + strand, within IAI46_24250at 5170.762 kb on + strand, within IAI46_24250at 5170.763 kb on - strand, within IAI46_24250at 5170.781 kb on + strand, within IAI46_24250at 5170.782 kb on - strand, within IAI46_24250at 5170.824 kb on + strand, within IAI46_24250at 5170.827 kb on - strand, within IAI46_24250at 5170.853 kb on + strand, within IAI46_24250at 5170.853 kb on + strand, within IAI46_24250at 5170.853 kb on + strand, within IAI46_24250at 5170.853 kb on + strand, within IAI46_24250at 5170.853 kb on + strand, within IAI46_24250at 5170.854 kb on - strand, within IAI46_24250at 5170.854 kb on - strand, within IAI46_24250at 5170.854 kb on - strand, within IAI46_24250at 5170.854 kb on - strand, within IAI46_24250at 5170.854 kb on - strand, within IAI46_24250at 5170.892 kb on + strand, within IAI46_24250at 5170.893 kb on - strand, within IAI46_24250at 5170.979 kb on + strand, within IAI46_24250at 5171.061 kb on + strand, within IAI46_24250at 5171.062 kb on - strand, within IAI46_24250at 5171.090 kb on + strand, within IAI46_24250at 5171.108 kb on - strand, within IAI46_24250at 5171.180 kb on + strand, within IAI46_24250at 5171.180 kb on + strand, within IAI46_24250at 5171.180 kb on + strand, within IAI46_24250at 5171.180 kb on + strand, within IAI46_24250at 5171.180 kb on + strand, within IAI46_24250at 5171.181 kb on - strand, within IAI46_24250at 5171.181 kb on - strand, within IAI46_24250at 5171.181 kb on - strand, within IAI46_24250at 5171.181 kb on - strand, within IAI46_24250at 5171.181 kb on - strand, within IAI46_24250at 5171.201 kb on + strand, within IAI46_24250at 5171.201 kb on + strand, within IAI46_24250at 5171.201 kb on + strand, within IAI46_24250at 5171.202 kb on - strand, within IAI46_24250at 5171.202 kb on - strand, within IAI46_24250at 5171.202 kb on - strand, within IAI46_24250at 5171.202 kb on - strand, within IAI46_24250at 5171.307 kb on + strand, within IAI46_24250at 5171.308 kb on - strand, within IAI46_24250at 5171.308 kb on - strand, within IAI46_24250at 5171.400 kb on - strandat 5171.424 kb on + strandat 5171.425 kb on - strandat 5171.425 kb on - strandat 5171.425 kb on - strandat 5171.425 kb on - strandat 5171.472 kb on + strandat 5171.472 kb on + strandat 5171.477 kb on - strandat 5171.612 kb on + strandat 5171.612 kb on + strandat 5171.613 kb on - strandat 5171.613 kb on - strandat 5171.613 kb on - strandat 5171.613 kb on - strandat 5171.677 kb on + strand, within IAI46_24255at 5171.721 kb on + strand, within IAI46_24255at 5171.722 kb on - strand, within IAI46_24255at 5171.722 kb on - strand, within IAI46_24255at 5171.765 kb on + strand, within IAI46_24255at 5171.765 kb on + strand, within IAI46_24255at 5171.766 kb on - strand, within IAI46_24255at 5171.766 kb on - strand, within IAI46_24255at 5171.816 kb on + strand, within IAI46_24255at 5171.817 kb on - strand, within IAI46_24255at 5171.848 kb on + strand, within IAI46_24255at 5171.852 kb on + strand, within IAI46_24255at 5171.853 kb on - strand, within IAI46_24255at 5171.853 kb on - strand, within IAI46_24255at 5171.957 kb on + strand, within IAI46_24255at 5171.957 kb on + strand, within IAI46_24255at 5171.957 kb on + strand, within IAI46_24255at 5171.958 kb on - strand, within IAI46_24255at 5171.958 kb on - strand, within IAI46_24255at 5171.990 kb on + strand, within IAI46_24255at 5171.991 kb on - strand, within IAI46_24255at 5172.026 kb on + strand, within IAI46_24255at 5172.026 kb on + strand, within IAI46_24255at 5172.027 kb on - strand, within IAI46_24255at 5172.027 kb on - strand, within IAI46_24255at 5172.027 kb on - strand, within IAI46_24255at 5172.027 kb on - strand, within IAI46_24255at 5172.063 kb on + strand, within IAI46_24255at 5172.063 kb on + strand, within IAI46_24255at 5172.079 kb on + strand, within IAI46_24255at 5172.079 kb on + strand, within IAI46_24255at 5172.080 kb on - strand, within IAI46_24255at 5172.098 kb on + strand, within IAI46_24255at 5172.120 kb on + strand, within IAI46_24255at 5172.121 kb on - strand, within IAI46_24255at 5172.154 kb on - strand, within IAI46_24255at 5172.154 kb on - strand, within IAI46_24255at 5172.157 kb on + strand, within IAI46_24255at 5172.157 kb on + strand, within IAI46_24255at 5172.157 kb on + strand, within IAI46_24255at 5172.157 kb on + strand, within IAI46_24255at 5172.158 kb on - strand, within IAI46_24255at 5172.182 kb on - strand, within IAI46_24255at 5172.202 kb on - strand, within IAI46_24255at 5172.202 kb on - strand, within IAI46_24255at 5172.274 kb on - strand, within IAI46_24255at 5172.274 kb on - strand, within IAI46_24255at 5172.315 kb on - strandat 5172.315 kb on - strandat 5172.315 kb on - strandat 5172.319 kb on + strandat 5172.319 kb on + strandat 5172.320 kb on - strandat 5172.320 kb on - strandat 5172.460 kb on + strandat 5172.461 kb on - strandat 5172.462 kb on + strandat 5172.462 kb on + strandat 5172.463 kb on - strandat 5172.463 kb on - strandat 5172.463 kb on - strandat 5172.467 kb on + strandat 5172.467 kb on + strandat 5172.467 kb on + strandat 5172.474 kb on + strandat 5172.474 kb on + strandat 5172.474 kb on + strandat 5172.475 kb on - strandat 5172.475 kb on - strandat 5172.475 kb on - strandat 5172.475 kb on - strandat 5172.475 kb on - strandat 5172.498 kb on - strandat 5172.505 kb on + strandat 5172.505 kb on + strandat 5172.505 kb on + strandat 5172.506 kb on - strandat 5172.506 kb on - strandat 5172.507 kb on + strandat 5172.507 kb on + strandat 5172.507 kb on + strandat 5172.508 kb on - strandat 5172.509 kb on + strandat 5172.509 kb on + strandat 5172.510 kb on - strandat 5172.510 kb on - strandat 5172.560 kb on + strandat 5172.561 kb on - strandat 5172.561 kb on - strandat 5172.566 kb on + strandat 5172.595 kb on + strandat 5172.595 kb on + strandat 5172.639 kb on + strandat 5172.639 kb on + strandat 5172.639 kb on + strandat 5172.639 kb on + strandat 5172.640 kb on - strandat 5172.640 kb on - strandat 5172.640 kb on - strandat 5172.737 kb on - strandat 5172.825 kb on - strandat 5172.894 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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5,170,612 - IAI46_24250 0.48 +0.0
5,170,631 + IAI46_24250 0.49 +0.9
5,170,647 - IAI46_24250 0.50 +0.4
5,170,762 + IAI46_24250 0.56 +0.9
5,170,762 + IAI46_24250 0.56 +0.6
5,170,763 - IAI46_24250 0.56 +0.4
5,170,781 + IAI46_24250 0.57 -0.7
5,170,782 - IAI46_24250 0.57 +0.4
5,170,824 + IAI46_24250 0.60 +0.3
5,170,827 - IAI46_24250 0.60 +0.6
5,170,853 + IAI46_24250 0.61 +0.6
5,170,853 + IAI46_24250 0.61 -0.1
5,170,853 + IAI46_24250 0.61 +0.5
5,170,853 + IAI46_24250 0.61 +0.4
5,170,853 + IAI46_24250 0.61 +0.8
5,170,854 - IAI46_24250 0.61 -0.4
5,170,854 - IAI46_24250 0.61 +1.7
5,170,854 - IAI46_24250 0.61 +1.6
5,170,854 - IAI46_24250 0.61 +0.7
5,170,854 - IAI46_24250 0.61 +0.1
5,170,892 + IAI46_24250 0.63 +0.4
5,170,893 - IAI46_24250 0.64 -0.0
5,170,979 + IAI46_24250 0.68 -0.6
5,171,061 + IAI46_24250 0.73 -0.1
5,171,062 - IAI46_24250 0.73 +1.6
5,171,090 + IAI46_24250 0.75 +0.2
5,171,108 - IAI46_24250 0.76 +0.6
5,171,180 + IAI46_24250 0.80 +0.1
5,171,180 + IAI46_24250 0.80 +0.8
5,171,180 + IAI46_24250 0.80 +0.0
5,171,180 + IAI46_24250 0.80 +0.1
5,171,180 + IAI46_24250 0.80 +0.7
5,171,181 - IAI46_24250 0.80 -0.1
5,171,181 - IAI46_24250 0.80 -0.0
5,171,181 - IAI46_24250 0.80 +0.2
5,171,181 - IAI46_24250 0.80 +1.0
5,171,181 - IAI46_24250 0.80 +0.1
5,171,201 + IAI46_24250 0.81 +0.6
5,171,201 + IAI46_24250 0.81 +0.2
5,171,201 + IAI46_24250 0.81 -0.6
5,171,202 - IAI46_24250 0.81 +1.2
5,171,202 - IAI46_24250 0.81 +1.0
5,171,202 - IAI46_24250 0.81 -0.3
5,171,202 - IAI46_24250 0.81 +0.1
5,171,307 + IAI46_24250 0.87 +0.3
5,171,308 - IAI46_24250 0.87 +1.3
5,171,308 - IAI46_24250 0.87 +0.3
5,171,400 - +0.7
5,171,424 + +0.8
5,171,425 - -0.1
5,171,425 - +1.0
5,171,425 - +1.1
5,171,425 - +1.8
5,171,472 + -0.0
5,171,472 + +0.2
5,171,477 - -0.2
5,171,612 + -0.4
5,171,612 + +1.3
5,171,613 - +0.9
5,171,613 - +0.2
5,171,613 - +0.3
5,171,613 - +1.0
5,171,677 + IAI46_24255 0.17 +1.0
5,171,721 + IAI46_24255 0.22 +2.6
5,171,722 - IAI46_24255 0.22 +0.6
5,171,722 - IAI46_24255 0.22 +1.6
5,171,765 + IAI46_24255 0.27 +0.8
5,171,765 + IAI46_24255 0.27 +1.1
5,171,766 - IAI46_24255 0.27 +0.9
5,171,766 - IAI46_24255 0.27 +0.2
5,171,816 + IAI46_24255 0.33 +1.0
5,171,817 - IAI46_24255 0.33 +0.2
5,171,848 + IAI46_24255 0.37 +0.6
5,171,852 + IAI46_24255 0.37 +0.8
5,171,853 - IAI46_24255 0.38 +0.5
5,171,853 - IAI46_24255 0.38 +0.6
5,171,957 + IAI46_24255 0.50 +0.4
5,171,957 + IAI46_24255 0.50 +0.9
5,171,957 + IAI46_24255 0.50 +0.6
5,171,958 - IAI46_24255 0.50 +1.1
5,171,958 - IAI46_24255 0.50 +0.1
5,171,990 + IAI46_24255 0.54 +0.3
5,171,991 - IAI46_24255 0.54 +0.8
5,172,026 + IAI46_24255 0.58 +0.7
5,172,026 + IAI46_24255 0.58 +0.9
5,172,027 - IAI46_24255 0.58 +0.6
5,172,027 - IAI46_24255 0.58 +0.3
5,172,027 - IAI46_24255 0.58 +0.4
5,172,027 - IAI46_24255 0.58 -0.4
5,172,063 + IAI46_24255 0.62 +0.5
5,172,063 + IAI46_24255 0.62 +1.2
5,172,079 + IAI46_24255 0.64 +1.3
5,172,079 + IAI46_24255 0.64 +0.7
5,172,080 - IAI46_24255 0.64 +0.1
5,172,098 + IAI46_24255 0.66 +1.5
5,172,120 + IAI46_24255 0.69 +1.1
5,172,121 - IAI46_24255 0.69 -0.4
5,172,154 - IAI46_24255 0.73 +0.6
5,172,154 - IAI46_24255 0.73 +0.9
5,172,157 + IAI46_24255 0.73 +0.1
5,172,157 + IAI46_24255 0.73 -1.6
5,172,157 + IAI46_24255 0.73 +0.9
5,172,157 + IAI46_24255 0.73 +0.8
5,172,158 - IAI46_24255 0.73 +0.6
5,172,182 - IAI46_24255 0.76 -0.1
5,172,202 - IAI46_24255 0.79 +0.2
5,172,202 - IAI46_24255 0.79 +0.5
5,172,274 - IAI46_24255 0.87 +0.9
5,172,274 - IAI46_24255 0.87 +0.7
5,172,315 - +0.2
5,172,315 - +0.3
5,172,315 - +0.6
5,172,319 + +0.7
5,172,319 + +0.5
5,172,320 - +1.2
5,172,320 - +0.9
5,172,460 + +0.0
5,172,461 - +0.8
5,172,462 + +0.5
5,172,462 + +1.0
5,172,463 - +0.2
5,172,463 - +0.1
5,172,463 - +0.1
5,172,467 + +0.5
5,172,467 + +1.1
5,172,467 + +0.8
5,172,474 + +0.7
5,172,474 + -0.8
5,172,474 + -0.0
5,172,475 - +0.6
5,172,475 - +0.1
5,172,475 - +0.3
5,172,475 - +0.2
5,172,475 - -0.2
5,172,498 - +0.6
5,172,505 + +0.5
5,172,505 + -0.0
5,172,505 + +0.6
5,172,506 - -0.1
5,172,506 - -0.3
5,172,507 + -0.1
5,172,507 + +1.0
5,172,507 + +0.8
5,172,508 - -0.6
5,172,509 + -0.4
5,172,509 + +0.1
5,172,510 - +0.2
5,172,510 - -0.3
5,172,560 + -0.0
5,172,561 - +1.6
5,172,561 - -1.0
5,172,566 + +0.1
5,172,595 + -1.5
5,172,595 + +0.0
5,172,639 + +0.0
5,172,639 + +0.7
5,172,639 + +1.6
5,172,639 + +0.4
5,172,640 - +0.2
5,172,640 - +0.2
5,172,640 - +0.7
5,172,737 - -0.1
5,172,825 - +0.4
5,172,894 - -0.6

Or see this region's nucleotide sequence