Strain Fitness in Serratia liquefaciens MT49 around IAI46_22770

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22765 and IAI46_22770 are separated by 11 nucleotidesIAI46_22770 and IAI46_22775 are separated by 463 nucleotides IAI46_22765: IAI46_22765 - sodium/pantothenate symporter, at 4,846,510 to 4,847,955 _22765 IAI46_22770: IAI46_22770 - 50S ribosomal protein L11 methyltransferase, at 4,847,967 to 4,848,848 _22770 IAI46_22775: IAI46_22775 - tRNA dihydrouridine synthase DusB, at 4,849,312 to 4,850,277 _22775 Position (kb) 4847 4848 4849Strain fitness (log2 ratio) -1 0 1 2at 4846.982 kb on - strand, within IAI46_22765at 4847.023 kb on + strand, within IAI46_22765at 4847.024 kb on - strand, within IAI46_22765at 4847.024 kb on - strand, within IAI46_22765at 4847.154 kb on + strand, within IAI46_22765at 4847.184 kb on - strand, within IAI46_22765at 4847.296 kb on + strand, within IAI46_22765at 4847.464 kb on + strand, within IAI46_22765at 4847.564 kb on - strand, within IAI46_22765at 4847.574 kb on - strand, within IAI46_22765at 4847.726 kb on + strand, within IAI46_22765at 4847.727 kb on - strand, within IAI46_22765at 4847.787 kb on + strand, within IAI46_22765at 4847.787 kb on + strand, within IAI46_22765at 4847.788 kb on - strand, within IAI46_22765at 4847.788 kb on - strand, within IAI46_22765at 4847.788 kb on - strand, within IAI46_22765at 4847.810 kb on + strand, within IAI46_22765at 4847.811 kb on - strandat 4847.815 kb on + strandat 4847.815 kb on + strandat 4847.815 kb on + strandat 4847.815 kb on + strandat 4847.815 kb on + strandat 4847.816 kb on - strandat 4847.816 kb on - strandat 4847.816 kb on - strandat 4847.816 kb on - strandat 4847.816 kb on - strandat 4847.816 kb on - strandat 4847.816 kb on - strandat 4847.817 kb on + strandat 4847.817 kb on + strandat 4847.817 kb on + strandat 4847.817 kb on + strandat 4847.818 kb on - strandat 4847.818 kb on - strandat 4847.818 kb on - strandat 4847.846 kb on + strandat 4847.862 kb on + strandat 4847.863 kb on - strandat 4847.883 kb on + strandat 4847.884 kb on - strandat 4847.899 kb on + strandat 4847.899 kb on + strandat 4847.899 kb on + strandat 4847.900 kb on - strandat 4847.902 kb on - strandat 4847.953 kb on + strandat 4847.953 kb on + strandat 4847.966 kb on + strandat 4847.966 kb on + strandat 4848.144 kb on + strand, within IAI46_22770at 4848.144 kb on + strand, within IAI46_22770at 4848.144 kb on + strand, within IAI46_22770at 4848.144 kb on + strand, within IAI46_22770at 4848.144 kb on + strand, within IAI46_22770at 4848.144 kb on + strand, within IAI46_22770at 4848.145 kb on - strand, within IAI46_22770at 4848.145 kb on - strand, within IAI46_22770at 4848.145 kb on - strand, within IAI46_22770at 4848.452 kb on + strand, within IAI46_22770at 4848.720 kb on + strand, within IAI46_22770at 4848.774 kb on + strandat 4848.775 kb on - strandat 4848.775 kb on - strandat 4848.846 kb on + strandat 4848.847 kb on - strandat 4848.847 kb on - strandat 4848.867 kb on - strandat 4849.014 kb on + strandat 4849.015 kb on - strandat 4849.056 kb on - strandat 4849.099 kb on - strandat 4849.112 kb on - strandat 4849.172 kb on + strandat 4849.294 kb on + strandat 4849.294 kb on + strandat 4849.294 kb on + strandat 4849.335 kb on + strandat 4849.335 kb on + strandat 4849.335 kb on + strandat 4849.335 kb on + strandat 4849.371 kb on + strandat 4849.386 kb on + strandat 4849.387 kb on - strandat 4849.394 kb on + strandat 4849.394 kb on + strandat 4849.394 kb on + strandat 4849.394 kb on + strandat 4849.394 kb on + strandat 4849.394 kb on + strandat 4849.394 kb on + strandat 4849.394 kb on + strandat 4849.394 kb on + strandat 4849.394 kb on + strandat 4849.394 kb on + strandat 4849.395 kb on - strandat 4849.467 kb on + strand, within IAI46_22775at 4849.545 kb on + strand, within IAI46_22775at 4849.563 kb on + strand, within IAI46_22775at 4849.566 kb on + strand, within IAI46_22775at 4849.566 kb on + strand, within IAI46_22775at 4849.602 kb on + strand, within IAI46_22775at 4849.725 kb on + strand, within IAI46_22775at 4849.759 kb on - strand, within IAI46_22775at 4849.797 kb on + strand, within IAI46_22775at 4849.797 kb on + strand, within IAI46_22775at 4849.797 kb on + strand, within IAI46_22775at 4849.797 kb on + strand, within IAI46_22775at 4849.798 kb on - strand, within IAI46_22775at 4849.799 kb on + strand, within IAI46_22775at 4849.799 kb on + strand, within IAI46_22775at 4849.799 kb on + strand, within IAI46_22775

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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4,846,982 - IAI46_22765 0.33 +1.0
4,847,023 + IAI46_22765 0.35 -0.6
4,847,024 - IAI46_22765 0.36 -0.2
4,847,024 - IAI46_22765 0.36 +0.1
4,847,154 + IAI46_22765 0.45 +0.3
4,847,184 - IAI46_22765 0.47 +1.2
4,847,296 + IAI46_22765 0.54 -0.6
4,847,464 + IAI46_22765 0.66 -0.6
4,847,564 - IAI46_22765 0.73 -0.1
4,847,574 - IAI46_22765 0.74 +0.5
4,847,726 + IAI46_22765 0.84 +0.6
4,847,727 - IAI46_22765 0.84 +0.2
4,847,787 + IAI46_22765 0.88 +0.3
4,847,787 + IAI46_22765 0.88 +0.7
4,847,788 - IAI46_22765 0.88 +0.4
4,847,788 - IAI46_22765 0.88 +0.1
4,847,788 - IAI46_22765 0.88 +0.2
4,847,810 + IAI46_22765 0.90 +0.2
4,847,811 - -0.2
4,847,815 + +0.8
4,847,815 + +0.4
4,847,815 + +0.5
4,847,815 + -0.5
4,847,815 + +0.4
4,847,816 - +0.5
4,847,816 - -1.3
4,847,816 - -0.4
4,847,816 - +0.2
4,847,816 - +0.1
4,847,816 - -0.9
4,847,816 - -0.3
4,847,817 + -0.5
4,847,817 + -0.4
4,847,817 + +1.7
4,847,817 + +0.6
4,847,818 - -0.1
4,847,818 - +1.5
4,847,818 - +0.3
4,847,846 + +2.2
4,847,862 + +0.6
4,847,863 - -0.2
4,847,883 + +0.5
4,847,884 - +0.3
4,847,899 + +0.2
4,847,899 + -0.2
4,847,899 + +1.2
4,847,900 - +0.3
4,847,902 - +0.1
4,847,953 + +0.6
4,847,953 + -0.1
4,847,966 + +0.2
4,847,966 + -0.2
4,848,144 + IAI46_22770 0.20 -0.9
4,848,144 + IAI46_22770 0.20 +0.5
4,848,144 + IAI46_22770 0.20 -0.6
4,848,144 + IAI46_22770 0.20 -1.4
4,848,144 + IAI46_22770 0.20 +0.6
4,848,144 + IAI46_22770 0.20 +0.6
4,848,145 - IAI46_22770 0.20 -0.6
4,848,145 - IAI46_22770 0.20 +0.6
4,848,145 - IAI46_22770 0.20 +0.3
4,848,452 + IAI46_22770 0.55 +0.3
4,848,720 + IAI46_22770 0.85 -0.6
4,848,774 + +0.7
4,848,775 - -0.4
4,848,775 - +0.2
4,848,846 + +0.7
4,848,847 - +0.1
4,848,847 - +0.2
4,848,867 - -0.3
4,849,014 + +0.2
4,849,015 - +0.4
4,849,056 - +0.5
4,849,099 - +0.8
4,849,112 - +0.3
4,849,172 + +1.0
4,849,294 + -0.3
4,849,294 + +0.4
4,849,294 + +0.8
4,849,335 + +0.2
4,849,335 + +0.4
4,849,335 + +0.8
4,849,335 + -0.3
4,849,371 + +0.2
4,849,386 + +0.9
4,849,387 - +0.2
4,849,394 + +0.9
4,849,394 + +0.1
4,849,394 + +0.3
4,849,394 + +0.4
4,849,394 + -0.2
4,849,394 + +0.1
4,849,394 + -0.1
4,849,394 + +0.2
4,849,394 + +0.8
4,849,394 + -0.4
4,849,394 + -0.7
4,849,395 - -0.2
4,849,467 + IAI46_22775 0.16 -0.7
4,849,545 + IAI46_22775 0.24 +0.8
4,849,563 + IAI46_22775 0.26 -1.5
4,849,566 + IAI46_22775 0.26 +0.7
4,849,566 + IAI46_22775 0.26 +0.9
4,849,602 + IAI46_22775 0.30 +0.6
4,849,725 + IAI46_22775 0.43 +1.5
4,849,759 - IAI46_22775 0.46 +0.2
4,849,797 + IAI46_22775 0.50 -0.4
4,849,797 + IAI46_22775 0.50 +1.0
4,849,797 + IAI46_22775 0.50 +1.2
4,849,797 + IAI46_22775 0.50 +0.7
4,849,798 - IAI46_22775 0.50 +0.2
4,849,799 + IAI46_22775 0.50 -0.3
4,849,799 + IAI46_22775 0.50 +0.2
4,849,799 + IAI46_22775 0.50 +0.2

Or see this region's nucleotide sequence