Strain Fitness in Serratia liquefaciens MT49 around IAI46_19740

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_19735 and IAI46_19740 are separated by 57 nucleotidesIAI46_19740 and IAI46_19745 overlap by 8 nucleotides IAI46_19735: IAI46_19735 - histidine kinase, at 4,167,258 to 4,168,535 _19735 IAI46_19740: IAI46_19740 - DEAD/DEAH box helicase family protein, at 4,168,593 to 4,169,759 _19740 IAI46_19745: IAI46_19745 - hypothetical protein, at 4,169,752 to 4,171,221 _19745 Position (kb) 4168 4169 4170Strain fitness (log2 ratio) -2 -1 0 1at 4167.707 kb on + strand, within IAI46_19735at 4167.708 kb on - strand, within IAI46_19735at 4167.731 kb on - strand, within IAI46_19735at 4167.737 kb on + strand, within IAI46_19735at 4167.737 kb on + strand, within IAI46_19735at 4167.864 kb on - strand, within IAI46_19735at 4168.036 kb on + strand, within IAI46_19735at 4168.037 kb on - strand, within IAI46_19735at 4168.486 kb on + strandat 4168.735 kb on - strand, within IAI46_19740at 4168.763 kb on + strand, within IAI46_19740at 4169.021 kb on + strand, within IAI46_19740at 4169.283 kb on - strand, within IAI46_19740at 4169.331 kb on - strand, within IAI46_19740at 4169.452 kb on - strand, within IAI46_19740at 4169.586 kb on - strand, within IAI46_19740at 4169.593 kb on + strand, within IAI46_19740at 4169.765 kb on + strandat 4169.765 kb on + strandat 4169.898 kb on + strandat 4169.943 kb on - strand, within IAI46_19745at 4169.943 kb on - strand, within IAI46_19745at 4169.943 kb on - strand, within IAI46_19745at 4170.210 kb on - strand, within IAI46_19745at 4170.268 kb on - strand, within IAI46_19745at 4170.273 kb on - strand, within IAI46_19745

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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4,167,707 + IAI46_19735 0.35 -0.1
4,167,708 - IAI46_19735 0.35 +1.3
4,167,731 - IAI46_19735 0.37 -1.2
4,167,737 + IAI46_19735 0.37 +0.2
4,167,737 + IAI46_19735 0.37 -0.1
4,167,864 - IAI46_19735 0.47 +0.5
4,168,036 + IAI46_19735 0.61 -2.1
4,168,037 - IAI46_19735 0.61 -0.8
4,168,486 + -0.5
4,168,735 - IAI46_19740 0.12 +1.1
4,168,763 + IAI46_19740 0.15 -0.4
4,169,021 + IAI46_19740 0.37 -0.2
4,169,283 - IAI46_19740 0.59 -0.4
4,169,331 - IAI46_19740 0.63 +0.2
4,169,452 - IAI46_19740 0.74 +0.1
4,169,586 - IAI46_19740 0.85 +0.3
4,169,593 + IAI46_19740 0.86 +0.8
4,169,765 + -1.2
4,169,765 + -0.3
4,169,898 + -0.8
4,169,943 - IAI46_19745 0.13 +1.7
4,169,943 - IAI46_19745 0.13 -0.6
4,169,943 - IAI46_19745 0.13 +1.4
4,170,210 - IAI46_19745 0.31 +0.6
4,170,268 - IAI46_19745 0.35 +0.3
4,170,273 - IAI46_19745 0.35 +1.0

Or see this region's nucleotide sequence