Strain Fitness in Serratia liquefaciens MT49 around IAI46_18805

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_18800 and IAI46_18805 are separated by 59 nucleotidesIAI46_18805 and IAI46_18810 are separated by 352 nucleotidesIAI46_18810 and IAI46_18815 are separated by 60 nucleotides IAI46_18800: IAI46_18800 - TonB-dependent siderophore receptor, at 3,958,752 to 3,960,950 _18800 IAI46_18805: IAI46_18805 - YncE family protein, at 3,961,010 to 3,962,095 _18805 IAI46_18810: IAI46_18810 - TOBE domain-containing protein, at 3,962,448 to 3,962,876 _18810 IAI46_18815: IAI46_18815 - LysE family translocator, at 3,962,937 to 3,963,554 _18815 Position (kb) 3961 3962 3963Strain fitness (log2 ratio) -1 0 1 2at 3960.053 kb on - strand, within IAI46_18800at 3960.083 kb on + strand, within IAI46_18800at 3960.084 kb on - strand, within IAI46_18800at 3960.084 kb on - strand, within IAI46_18800at 3960.303 kb on + strand, within IAI46_18800at 3960.304 kb on - strand, within IAI46_18800at 3960.341 kb on - strand, within IAI46_18800at 3960.341 kb on - strand, within IAI46_18800at 3960.362 kb on + strand, within IAI46_18800at 3960.362 kb on + strand, within IAI46_18800at 3960.396 kb on - strand, within IAI46_18800at 3960.402 kb on - strand, within IAI46_18800at 3960.424 kb on - strand, within IAI46_18800at 3960.566 kb on - strand, within IAI46_18800at 3960.566 kb on - strand, within IAI46_18800at 3960.586 kb on + strand, within IAI46_18800at 3960.587 kb on - strand, within IAI46_18800at 3960.686 kb on + strand, within IAI46_18800at 3960.686 kb on + strand, within IAI46_18800at 3960.687 kb on - strand, within IAI46_18800at 3960.693 kb on + strand, within IAI46_18800at 3960.950 kb on + strandat 3960.964 kb on - strandat 3960.964 kb on - strandat 3961.012 kb on - strandat 3961.015 kb on + strandat 3961.054 kb on + strandat 3961.066 kb on + strandat 3961.066 kb on + strandat 3961.067 kb on - strandat 3961.070 kb on - strandat 3961.167 kb on + strand, within IAI46_18805at 3961.167 kb on + strand, within IAI46_18805at 3961.167 kb on + strand, within IAI46_18805at 3961.167 kb on + strand, within IAI46_18805at 3961.167 kb on + strand, within IAI46_18805at 3961.168 kb on - strand, within IAI46_18805at 3961.168 kb on - strand, within IAI46_18805at 3961.168 kb on - strand, within IAI46_18805at 3961.218 kb on + strand, within IAI46_18805at 3961.218 kb on + strand, within IAI46_18805at 3961.300 kb on + strand, within IAI46_18805at 3961.301 kb on - strand, within IAI46_18805at 3961.608 kb on - strand, within IAI46_18805at 3961.611 kb on + strand, within IAI46_18805at 3961.611 kb on + strand, within IAI46_18805at 3961.611 kb on + strand, within IAI46_18805at 3961.611 kb on + strand, within IAI46_18805at 3961.618 kb on + strand, within IAI46_18805at 3961.618 kb on + strand, within IAI46_18805at 3961.748 kb on - strand, within IAI46_18805at 3961.756 kb on - strand, within IAI46_18805at 3961.850 kb on - strand, within IAI46_18805at 3961.851 kb on + strand, within IAI46_18805at 3961.852 kb on - strand, within IAI46_18805at 3961.899 kb on + strand, within IAI46_18805at 3961.899 kb on + strand, within IAI46_18805at 3961.900 kb on - strand, within IAI46_18805at 3961.935 kb on + strand, within IAI46_18805at 3962.114 kb on - strandat 3962.115 kb on + strandat 3962.115 kb on + strandat 3962.116 kb on - strandat 3962.116 kb on - strandat 3962.116 kb on - strandat 3962.185 kb on - strandat 3962.185 kb on - strandat 3962.367 kb on - strandat 3962.409 kb on + strandat 3962.409 kb on + strandat 3962.410 kb on - strandat 3962.509 kb on + strand, within IAI46_18810at 3962.559 kb on - strand, within IAI46_18810at 3962.569 kb on + strand, within IAI46_18810at 3962.569 kb on + strand, within IAI46_18810at 3962.639 kb on + strand, within IAI46_18810at 3962.745 kb on - strand, within IAI46_18810at 3962.875 kb on - strandat 3962.875 kb on - strandat 3962.944 kb on - strandat 3963.070 kb on + strand, within IAI46_18815

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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3,960,053 - IAI46_18800 0.59 +0.1
3,960,083 + IAI46_18800 0.61 +0.3
3,960,084 - IAI46_18800 0.61 +0.1
3,960,084 - IAI46_18800 0.61 -0.9
3,960,303 + IAI46_18800 0.71 +0.1
3,960,304 - IAI46_18800 0.71 +0.4
3,960,341 - IAI46_18800 0.72 -0.2
3,960,341 - IAI46_18800 0.72 +0.4
3,960,362 + IAI46_18800 0.73 +1.0
3,960,362 + IAI46_18800 0.73 +0.4
3,960,396 - IAI46_18800 0.75 +1.9
3,960,402 - IAI46_18800 0.75 -0.6
3,960,424 - IAI46_18800 0.76 -0.5
3,960,566 - IAI46_18800 0.82 +0.5
3,960,566 - IAI46_18800 0.82 -0.2
3,960,586 + IAI46_18800 0.83 +1.3
3,960,587 - IAI46_18800 0.83 +0.2
3,960,686 + IAI46_18800 0.88 +0.1
3,960,686 + IAI46_18800 0.88 +0.5
3,960,687 - IAI46_18800 0.88 -0.2
3,960,693 + IAI46_18800 0.88 -0.1
3,960,950 + -0.9
3,960,964 - -0.1
3,960,964 - -0.9
3,961,012 - +0.1
3,961,015 + +0.1
3,961,054 + +0.5
3,961,066 + -0.4
3,961,066 + +1.0
3,961,067 - +0.4
3,961,070 - +0.4
3,961,167 + IAI46_18805 0.14 +0.4
3,961,167 + IAI46_18805 0.14 -0.5
3,961,167 + IAI46_18805 0.14 -0.5
3,961,167 + IAI46_18805 0.14 -0.7
3,961,167 + IAI46_18805 0.14 -1.4
3,961,168 - IAI46_18805 0.15 -0.4
3,961,168 - IAI46_18805 0.15 -1.5
3,961,168 - IAI46_18805 0.15 +0.6
3,961,218 + IAI46_18805 0.19 +0.4
3,961,218 + IAI46_18805 0.19 +0.9
3,961,300 + IAI46_18805 0.27 -0.1
3,961,301 - IAI46_18805 0.27 +0.3
3,961,608 - IAI46_18805 0.55 +0.1
3,961,611 + IAI46_18805 0.55 +0.6
3,961,611 + IAI46_18805 0.55 +0.7
3,961,611 + IAI46_18805 0.55 -0.4
3,961,611 + IAI46_18805 0.55 +0.9
3,961,618 + IAI46_18805 0.56 +0.3
3,961,618 + IAI46_18805 0.56 -0.3
3,961,748 - IAI46_18805 0.68 +0.1
3,961,756 - IAI46_18805 0.69 +0.1
3,961,850 - IAI46_18805 0.77 +0.1
3,961,851 + IAI46_18805 0.77 +0.7
3,961,852 - IAI46_18805 0.78 +0.5
3,961,899 + IAI46_18805 0.82 +0.4
3,961,899 + IAI46_18805 0.82 +0.8
3,961,900 - IAI46_18805 0.82 -0.1
3,961,935 + IAI46_18805 0.85 -0.2
3,962,114 - -0.4
3,962,115 + +0.0
3,962,115 + +0.4
3,962,116 - +0.6
3,962,116 - +0.2
3,962,116 - +0.8
3,962,185 - -0.1
3,962,185 - -0.8
3,962,367 - +0.4
3,962,409 + +1.0
3,962,409 + +0.7
3,962,410 - +1.1
3,962,509 + IAI46_18810 0.14 +0.9
3,962,559 - IAI46_18810 0.26 -0.5
3,962,569 + IAI46_18810 0.28 -0.5
3,962,569 + IAI46_18810 0.28 +0.2
3,962,639 + IAI46_18810 0.45 +0.3
3,962,745 - IAI46_18810 0.69 -0.7
3,962,875 - -0.1
3,962,875 - +0.1
3,962,944 - +1.1
3,963,070 + IAI46_18815 0.22 -0.7

Or see this region's nucleotide sequence