Strain Fitness in Serratia liquefaciens MT49 around IAI46_16100

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16090 and IAI46_16095 are separated by 253 nucleotidesIAI46_16095 and IAI46_16100 overlap by 7 nucleotidesIAI46_16100 and IAI46_16105 are separated by 2 nucleotides IAI46_16090: IAI46_16090 - tryptophan 2,3-dioxygenase, at 3,374,222 to 3,375,064 _16090 IAI46_16095: IAI46_16095 - MaoC family dehydratase, at 3,375,318 to 3,375,812 _16095 IAI46_16100: IAI46_16100 - ornithine cyclodeaminase family protein, at 3,375,806 to 3,376,756 _16100 IAI46_16105: IAI46_16105 - 4-hydroxy-2-oxovalerate aldolase, at 3,376,759 to 3,377,760 _16105 IAI46_16110: IAI46_16110 - acetaldehyde dehydrogenase (acetylating), at 3,377,744 to 3,378,631 _16110 Position (kb) 3375 3376 3377Strain fitness (log2 ratio) -2 -1 0 1at 3374.840 kb on - strand, within IAI46_16090at 3374.998 kb on - strandat 3374.998 kb on - strandat 3375.006 kb on + strandat 3375.006 kb on + strandat 3375.007 kb on - strandat 3375.007 kb on - strandat 3375.048 kb on - strandat 3375.070 kb on - strandat 3375.070 kb on - strandat 3375.155 kb on + strandat 3375.155 kb on + strandat 3375.156 kb on - strandat 3375.214 kb on + strandat 3375.214 kb on + strandat 3375.214 kb on + strandat 3375.214 kb on + strandat 3375.331 kb on + strandat 3375.464 kb on + strand, within IAI46_16095at 3375.483 kb on - strand, within IAI46_16095at 3375.638 kb on - strand, within IAI46_16095at 3375.760 kb on + strand, within IAI46_16095at 3375.784 kb on + strandat 3375.834 kb on + strandat 3375.836 kb on + strandat 3375.836 kb on + strandat 3375.837 kb on - strandat 3375.967 kb on - strand, within IAI46_16100at 3375.967 kb on - strand, within IAI46_16100at 3376.134 kb on + strand, within IAI46_16100at 3376.134 kb on + strand, within IAI46_16100at 3376.134 kb on + strand, within IAI46_16100at 3376.177 kb on + strand, within IAI46_16100at 3376.178 kb on - strand, within IAI46_16100at 3376.670 kb on + strandat 3376.670 kb on + strandat 3376.795 kb on + strandat 3376.795 kb on + strandat 3376.796 kb on - strandat 3376.796 kb on - strandat 3377.176 kb on - strand, within IAI46_16105at 3377.298 kb on - strand, within IAI46_16105at 3377.363 kb on - strand, within IAI46_16105at 3377.455 kb on + strand, within IAI46_16105at 3377.515 kb on - strand, within IAI46_16105at 3377.659 kb on - strand, within IAI46_16105at 3377.663 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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3,374,840 - IAI46_16090 0.73 +0.5
3,374,998 - +0.5
3,374,998 - -0.1
3,375,006 + +0.9
3,375,006 + -0.1
3,375,007 - +0.5
3,375,007 - -0.2
3,375,048 - -0.5
3,375,070 - +0.0
3,375,070 - +0.6
3,375,155 + +0.2
3,375,155 + +0.2
3,375,156 - -1.0
3,375,214 + +0.2
3,375,214 + -0.2
3,375,214 + -0.2
3,375,214 + -0.5
3,375,331 + +0.2
3,375,464 + IAI46_16095 0.29 -0.1
3,375,483 - IAI46_16095 0.33 +0.3
3,375,638 - IAI46_16095 0.65 -1.1
3,375,760 + IAI46_16095 0.89 +0.3
3,375,784 + -0.1
3,375,834 + -1.5
3,375,836 + -0.1
3,375,836 + -0.5
3,375,837 - +1.3
3,375,967 - IAI46_16100 0.17 +0.9
3,375,967 - IAI46_16100 0.17 +0.9
3,376,134 + IAI46_16100 0.34 +0.0
3,376,134 + IAI46_16100 0.34 -0.4
3,376,134 + IAI46_16100 0.34 +0.6
3,376,177 + IAI46_16100 0.39 -1.5
3,376,178 - IAI46_16100 0.39 -2.1
3,376,670 + -0.5
3,376,670 + +0.6
3,376,795 + +0.8
3,376,795 + +0.1
3,376,796 - +0.2
3,376,796 - -0.1
3,377,176 - IAI46_16105 0.42 -0.1
3,377,298 - IAI46_16105 0.54 +0.9
3,377,363 - IAI46_16105 0.60 +0.2
3,377,455 + IAI46_16105 0.69 -0.5
3,377,515 - IAI46_16105 0.75 +0.4
3,377,659 - IAI46_16105 0.90 +0.3
3,377,663 - +0.3

Or see this region's nucleotide sequence