Strain Fitness in Serratia liquefaciens MT49 around IAI46_15945

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15935 and IAI46_15940 are separated by 18 nucleotidesIAI46_15940 and IAI46_15945 are separated by 12 nucleotidesIAI46_15945 and IAI46_15950 are separated by 186 nucleotidesIAI46_15950 and IAI46_15955 are separated by 12 nucleotides IAI46_15935: IAI46_15935 - flagellar basal-body rod protein FlgG, at 3,344,931 to 3,345,713 _15935 IAI46_15940: IAI46_15940 - flagellar basal body rod protein FlgF, at 3,345,732 to 3,346,487 _15940 IAI46_15945: IAI46_15945 - flagellar hook protein FlgE, at 3,346,500 to 3,347,723 _15945 IAI46_15950: IAI46_15950 - flagellar hook assembly protein FlgD, at 3,347,910 to 3,348,587 _15950 IAI46_15955: IAI46_15955 - flagellar basal body rod protein FlgC, at 3,348,600 to 3,349,004 _15955 Position (kb) 3346 3347 3348Strain fitness (log2 ratio) -2 -1 0 1at 3345.577 kb on + strand, within IAI46_15935at 3345.577 kb on + strand, within IAI46_15935at 3345.659 kb on + strandat 3346.101 kb on + strand, within IAI46_15940at 3346.179 kb on - strand, within IAI46_15940at 3346.192 kb on + strand, within IAI46_15940at 3346.271 kb on - strand, within IAI46_15940at 3346.415 kb on + strandat 3346.487 kb on + strandat 3346.488 kb on - strandat 3346.499 kb on - strandat 3346.501 kb on + strandat 3346.501 kb on + strandat 3346.502 kb on - strandat 3346.567 kb on + strandat 3346.571 kb on + strandat 3346.571 kb on + strandat 3346.571 kb on + strandat 3346.571 kb on + strandat 3346.572 kb on - strandat 3346.678 kb on - strand, within IAI46_15945at 3346.678 kb on - strand, within IAI46_15945at 3346.802 kb on - strand, within IAI46_15945at 3347.064 kb on + strand, within IAI46_15945at 3347.091 kb on - strand, within IAI46_15945at 3347.092 kb on + strand, within IAI46_15945at 3347.150 kb on + strand, within IAI46_15945at 3347.164 kb on + strand, within IAI46_15945at 3347.165 kb on - strand, within IAI46_15945at 3347.165 kb on - strand, within IAI46_15945at 3347.186 kb on - strand, within IAI46_15945at 3347.191 kb on + strand, within IAI46_15945at 3347.191 kb on + strand, within IAI46_15945at 3347.191 kb on + strand, within IAI46_15945at 3347.237 kb on + strand, within IAI46_15945at 3347.237 kb on + strand, within IAI46_15945at 3347.443 kb on + strand, within IAI46_15945at 3347.769 kb on + strandat 3347.770 kb on - strandat 3347.780 kb on + strandat 3347.782 kb on + strandat 3347.783 kb on - strandat 3347.838 kb on + strandat 3347.839 kb on - strandat 3347.847 kb on - strandat 3347.847 kb on - strandat 3347.847 kb on - strandat 3347.904 kb on - strandat 3347.904 kb on - strandat 3348.062 kb on + strand, within IAI46_15950at 3348.243 kb on - strand, within IAI46_15950at 3348.402 kb on - strand, within IAI46_15950at 3348.671 kb on - strand, within IAI46_15955at 3348.723 kb on - strand, within IAI46_15955

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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3,345,577 + IAI46_15935 0.83 -0.3
3,345,577 + IAI46_15935 0.83 +0.4
3,345,659 + +0.5
3,346,101 + IAI46_15940 0.49 -0.7
3,346,179 - IAI46_15940 0.59 +1.1
3,346,192 + IAI46_15940 0.61 +0.0
3,346,271 - IAI46_15940 0.71 +0.1
3,346,415 + -0.4
3,346,487 + -1.2
3,346,488 - +0.7
3,346,499 - -1.8
3,346,501 + -0.3
3,346,501 + +0.3
3,346,502 - +0.1
3,346,567 + +0.7
3,346,571 + +0.7
3,346,571 + +0.7
3,346,571 + +0.2
3,346,571 + +0.2
3,346,572 - +0.1
3,346,678 - IAI46_15945 0.15 -0.3
3,346,678 - IAI46_15945 0.15 +0.1
3,346,802 - IAI46_15945 0.25 -0.0
3,347,064 + IAI46_15945 0.46 -0.1
3,347,091 - IAI46_15945 0.48 +0.0
3,347,092 + IAI46_15945 0.48 -0.5
3,347,150 + IAI46_15945 0.53 +0.1
3,347,164 + IAI46_15945 0.54 +0.3
3,347,165 - IAI46_15945 0.54 -0.6
3,347,165 - IAI46_15945 0.54 +0.4
3,347,186 - IAI46_15945 0.56 +0.1
3,347,191 + IAI46_15945 0.56 -0.9
3,347,191 + IAI46_15945 0.56 +0.4
3,347,191 + IAI46_15945 0.56 -0.3
3,347,237 + IAI46_15945 0.60 +0.3
3,347,237 + IAI46_15945 0.60 +0.5
3,347,443 + IAI46_15945 0.77 -0.2
3,347,769 + -0.5
3,347,770 - +0.0
3,347,780 + +0.5
3,347,782 + -0.2
3,347,783 - -1.1
3,347,838 + +0.6
3,347,839 - +0.1
3,347,847 - +0.2
3,347,847 - -0.3
3,347,847 - +0.1
3,347,904 - +0.5
3,347,904 - -0.1
3,348,062 + IAI46_15950 0.22 +0.5
3,348,243 - IAI46_15950 0.49 +1.2
3,348,402 - IAI46_15950 0.73 +0.3
3,348,671 - IAI46_15955 0.18 +0.1
3,348,723 - IAI46_15955 0.30 +0.6

Or see this region's nucleotide sequence