Experiment: No stress control, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_15935 and IAI46_15940 are separated by 18 nucleotides IAI46_15940 and IAI46_15945 are separated by 12 nucleotides IAI46_15945 and IAI46_15950 are separated by 186 nucleotides IAI46_15950 and IAI46_15955 are separated by 12 nucleotides
IAI46_15935: IAI46_15935 - flagellar basal-body rod protein FlgG, at 3,344,931 to 3,345,713
_15935
IAI46_15940: IAI46_15940 - flagellar basal body rod protein FlgF, at 3,345,732 to 3,346,487
_15940
IAI46_15945: IAI46_15945 - flagellar hook protein FlgE, at 3,346,500 to 3,347,723
_15945
IAI46_15950: IAI46_15950 - flagellar hook assembly protein FlgD, at 3,347,910 to 3,348,587
_15950
IAI46_15955: IAI46_15955 - flagellar basal body rod protein FlgC, at 3,348,600 to 3,349,004
_15955
Position (kb)
3346
3347
3348 Strain fitness (log2 ratio)
-2
-1
0
1 at 3345.577 kb on + strand, within IAI46_15935 at 3345.577 kb on + strand, within IAI46_15935 at 3345.659 kb on + strand at 3346.101 kb on + strand, within IAI46_15940 at 3346.179 kb on - strand, within IAI46_15940 at 3346.192 kb on + strand, within IAI46_15940 at 3346.271 kb on - strand, within IAI46_15940 at 3346.415 kb on + strand at 3346.487 kb on + strand at 3346.488 kb on - strand at 3346.499 kb on - strand at 3346.501 kb on + strand at 3346.501 kb on + strand at 3346.502 kb on - strand at 3346.567 kb on + strand at 3346.571 kb on + strand at 3346.571 kb on + strand at 3346.571 kb on + strand at 3346.571 kb on + strand at 3346.572 kb on - strand at 3346.678 kb on - strand, within IAI46_15945 at 3346.678 kb on - strand, within IAI46_15945 at 3346.802 kb on - strand, within IAI46_15945 at 3347.064 kb on + strand, within IAI46_15945 at 3347.091 kb on - strand, within IAI46_15945 at 3347.092 kb on + strand, within IAI46_15945 at 3347.150 kb on + strand, within IAI46_15945 at 3347.164 kb on + strand, within IAI46_15945 at 3347.165 kb on - strand, within IAI46_15945 at 3347.165 kb on - strand, within IAI46_15945 at 3347.186 kb on - strand, within IAI46_15945 at 3347.191 kb on + strand, within IAI46_15945 at 3347.191 kb on + strand, within IAI46_15945 at 3347.191 kb on + strand, within IAI46_15945 at 3347.237 kb on + strand, within IAI46_15945 at 3347.237 kb on + strand, within IAI46_15945 at 3347.443 kb on + strand, within IAI46_15945 at 3347.769 kb on + strand at 3347.770 kb on - strand at 3347.780 kb on + strand at 3347.782 kb on + strand at 3347.783 kb on - strand at 3347.838 kb on + strand at 3347.839 kb on - strand at 3347.847 kb on - strand at 3347.847 kb on - strand at 3347.847 kb on - strand at 3347.904 kb on - strand at 3347.904 kb on - strand at 3348.062 kb on + strand, within IAI46_15950 at 3348.243 kb on - strand, within IAI46_15950 at 3348.402 kb on - strand, within IAI46_15950 at 3348.671 kb on - strand, within IAI46_15955 at 3348.723 kb on - strand, within IAI46_15955
Per-strain Table
Position Strand Gene LocusTag Fraction No stress control, aerobic remove 3,345,577 + IAI46_15935 0.83 -0.3 3,345,577 + IAI46_15935 0.83 +0.4 3,345,659 + +0.5 3,346,101 + IAI46_15940 0.49 -0.7 3,346,179 - IAI46_15940 0.59 +1.1 3,346,192 + IAI46_15940 0.61 +0.0 3,346,271 - IAI46_15940 0.71 +0.1 3,346,415 + -0.4 3,346,487 + -1.2 3,346,488 - +0.7 3,346,499 - -1.8 3,346,501 + -0.3 3,346,501 + +0.3 3,346,502 - +0.1 3,346,567 + +0.7 3,346,571 + +0.7 3,346,571 + +0.7 3,346,571 + +0.2 3,346,571 + +0.2 3,346,572 - +0.1 3,346,678 - IAI46_15945 0.15 -0.3 3,346,678 - IAI46_15945 0.15 +0.1 3,346,802 - IAI46_15945 0.25 -0.0 3,347,064 + IAI46_15945 0.46 -0.1 3,347,091 - IAI46_15945 0.48 +0.0 3,347,092 + IAI46_15945 0.48 -0.5 3,347,150 + IAI46_15945 0.53 +0.1 3,347,164 + IAI46_15945 0.54 +0.3 3,347,165 - IAI46_15945 0.54 -0.6 3,347,165 - IAI46_15945 0.54 +0.4 3,347,186 - IAI46_15945 0.56 +0.1 3,347,191 + IAI46_15945 0.56 -0.9 3,347,191 + IAI46_15945 0.56 +0.4 3,347,191 + IAI46_15945 0.56 -0.3 3,347,237 + IAI46_15945 0.60 +0.3 3,347,237 + IAI46_15945 0.60 +0.5 3,347,443 + IAI46_15945 0.77 -0.2 3,347,769 + -0.5 3,347,770 - +0.0 3,347,780 + +0.5 3,347,782 + -0.2 3,347,783 - -1.1 3,347,838 + +0.6 3,347,839 - +0.1 3,347,847 - +0.2 3,347,847 - -0.3 3,347,847 - +0.1 3,347,904 - +0.5 3,347,904 - -0.1 3,348,062 + IAI46_15950 0.22 +0.5 3,348,243 - IAI46_15950 0.49 +1.2 3,348,402 - IAI46_15950 0.73 +0.3 3,348,671 - IAI46_15955 0.18 +0.1 3,348,723 - IAI46_15955 0.30 +0.6
Or see this region's nucleotide sequence