Strain Fitness in Serratia liquefaciens MT49 around IAI46_15635

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15630 and IAI46_15635 are separated by 134 nucleotidesIAI46_15635 and IAI46_15640 overlap by 4 nucleotidesIAI46_15640 and IAI46_15645 overlap by 11 nucleotides IAI46_15630: IAI46_15630 - ABC transporter substrate-binding protein, at 3,278,862 to 3,280,436 _15630 IAI46_15635: IAI46_15635 - ABC transporter ATP-binding protein, at 3,280,571 to 3,281,242 _15635 IAI46_15640: IAI46_15640 - ABC transporter ATP-binding protein, at 3,281,239 to 3,282,075 _15640 IAI46_15645: IAI46_15645 - ABC transporter permease, at 3,282,065 to 3,282,934 _15645 Position (kb) 3280 3281 3282Strain fitness (log2 ratio) -2 -1 0 1 2at 3279.586 kb on + strand, within IAI46_15630at 3279.590 kb on - strand, within IAI46_15630at 3279.670 kb on + strand, within IAI46_15630at 3279.702 kb on + strand, within IAI46_15630at 3279.807 kb on + strand, within IAI46_15630at 3279.807 kb on + strand, within IAI46_15630at 3279.811 kb on + strand, within IAI46_15630at 3279.812 kb on - strand, within IAI46_15630at 3279.812 kb on - strand, within IAI46_15630at 3279.812 kb on - strand, within IAI46_15630at 3279.981 kb on + strand, within IAI46_15630at 3279.982 kb on - strand, within IAI46_15630at 3279.982 kb on - strand, within IAI46_15630at 3279.982 kb on - strand, within IAI46_15630at 3280.163 kb on + strand, within IAI46_15630at 3280.164 kb on - strand, within IAI46_15630at 3280.264 kb on + strand, within IAI46_15630at 3280.264 kb on + strand, within IAI46_15630at 3280.265 kb on - strand, within IAI46_15630at 3280.265 kb on - strand, within IAI46_15630at 3280.413 kb on + strandat 3280.414 kb on - strandat 3280.468 kb on + strandat 3280.481 kb on + strandat 3280.482 kb on - strandat 3280.482 kb on - strandat 3280.482 kb on - strandat 3280.482 kb on - strandat 3280.914 kb on - strand, within IAI46_15635at 3280.955 kb on + strand, within IAI46_15635at 3281.011 kb on + strand, within IAI46_15635at 3281.011 kb on + strand, within IAI46_15635at 3281.394 kb on - strand, within IAI46_15640at 3281.394 kb on - strand, within IAI46_15640at 3281.417 kb on + strand, within IAI46_15640at 3281.463 kb on + strand, within IAI46_15640at 3281.463 kb on + strand, within IAI46_15640at 3281.463 kb on + strand, within IAI46_15640at 3281.463 kb on + strand, within IAI46_15640at 3281.463 kb on + strand, within IAI46_15640at 3281.464 kb on - strand, within IAI46_15640at 3281.464 kb on - strand, within IAI46_15640at 3281.466 kb on + strand, within IAI46_15640at 3281.466 kb on + strand, within IAI46_15640at 3281.466 kb on + strand, within IAI46_15640at 3281.466 kb on + strand, within IAI46_15640at 3281.467 kb on - strand, within IAI46_15640at 3281.467 kb on - strand, within IAI46_15640at 3281.467 kb on - strand, within IAI46_15640at 3281.467 kb on - strand, within IAI46_15640at 3281.718 kb on + strand, within IAI46_15640at 3281.893 kb on + strand, within IAI46_15640at 3282.063 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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3,279,586 + IAI46_15630 0.46 -0.4
3,279,590 - IAI46_15630 0.46 -0.4
3,279,670 + IAI46_15630 0.51 +0.9
3,279,702 + IAI46_15630 0.53 +0.0
3,279,807 + IAI46_15630 0.60 +0.4
3,279,807 + IAI46_15630 0.60 -2.1
3,279,811 + IAI46_15630 0.60 +0.0
3,279,812 - IAI46_15630 0.60 -0.1
3,279,812 - IAI46_15630 0.60 -0.5
3,279,812 - IAI46_15630 0.60 +0.1
3,279,981 + IAI46_15630 0.71 -0.1
3,279,982 - IAI46_15630 0.71 -0.0
3,279,982 - IAI46_15630 0.71 +0.7
3,279,982 - IAI46_15630 0.71 +0.3
3,280,163 + IAI46_15630 0.83 +0.6
3,280,164 - IAI46_15630 0.83 +1.9
3,280,264 + IAI46_15630 0.89 +0.2
3,280,264 + IAI46_15630 0.89 -0.9
3,280,265 - IAI46_15630 0.89 -0.9
3,280,265 - IAI46_15630 0.89 +0.5
3,280,413 + -0.2
3,280,414 - -1.5
3,280,468 + +0.2
3,280,481 + +0.1
3,280,482 - -0.1
3,280,482 - -0.2
3,280,482 - -0.0
3,280,482 - +0.1
3,280,914 - IAI46_15635 0.51 -1.0
3,280,955 + IAI46_15635 0.57 -1.1
3,281,011 + IAI46_15635 0.65 -1.0
3,281,011 + IAI46_15635 0.65 +0.0
3,281,394 - IAI46_15640 0.19 +0.4
3,281,394 - IAI46_15640 0.19 +0.2
3,281,417 + IAI46_15640 0.21 +1.4
3,281,463 + IAI46_15640 0.27 +1.0
3,281,463 + IAI46_15640 0.27 -0.6
3,281,463 + IAI46_15640 0.27 -0.4
3,281,463 + IAI46_15640 0.27 +0.3
3,281,463 + IAI46_15640 0.27 +0.9
3,281,464 - IAI46_15640 0.27 +0.2
3,281,464 - IAI46_15640 0.27 -0.8
3,281,466 + IAI46_15640 0.27 +0.4
3,281,466 + IAI46_15640 0.27 -0.6
3,281,466 + IAI46_15640 0.27 +1.4
3,281,466 + IAI46_15640 0.27 -0.1
3,281,467 - IAI46_15640 0.27 -0.9
3,281,467 - IAI46_15640 0.27 -1.2
3,281,467 - IAI46_15640 0.27 -0.1
3,281,467 - IAI46_15640 0.27 +0.2
3,281,718 + IAI46_15640 0.57 -1.0
3,281,893 + IAI46_15640 0.78 +0.9
3,282,063 + +1.0

Or see this region's nucleotide sequence