Strain Fitness in Serratia liquefaciens MT49 around IAI46_15490

Experiment: No stress control, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_15480 and IAI46_15485 are separated by 68 nucleotidesIAI46_15485 and IAI46_15490 are separated by 57 nucleotidesIAI46_15490 and IAI46_15495 overlap by 10 nucleotides IAI46_15480: IAI46_15480 - fimbrial protein, at 3,240,266 to 3,240,811 _15480 IAI46_15485: IAI46_15485 - molecular chaperone, at 3,240,880 to 3,241,554 _15485 IAI46_15490: IAI46_15490 - fimbrial biogenesis outer membrane usher protein, at 3,241,612 to 3,244,140 _15490 IAI46_15495: IAI46_15495 - fimbrial protein, at 3,244,131 to 3,245,156 _15495 Position (kb) 3241 3242 3243 3244 3245Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3240.665 kb on + strand, within IAI46_15480at 3240.665 kb on + strand, within IAI46_15480at 3240.666 kb on - strand, within IAI46_15480at 3240.666 kb on - strand, within IAI46_15480at 3240.737 kb on + strand, within IAI46_15480at 3240.803 kb on + strandat 3240.804 kb on - strandat 3240.887 kb on - strandat 3240.914 kb on + strandat 3240.914 kb on + strandat 3241.186 kb on + strand, within IAI46_15485at 3241.187 kb on - strand, within IAI46_15485at 3241.375 kb on + strand, within IAI46_15485at 3241.376 kb on - strand, within IAI46_15485at 3241.429 kb on + strand, within IAI46_15485at 3241.429 kb on + strand, within IAI46_15485at 3241.429 kb on + strand, within IAI46_15485at 3241.430 kb on - strand, within IAI46_15485at 3241.430 kb on - strand, within IAI46_15485at 3241.430 kb on - strand, within IAI46_15485at 3241.817 kb on - strandat 3242.092 kb on + strand, within IAI46_15490at 3242.093 kb on - strand, within IAI46_15490at 3242.143 kb on + strand, within IAI46_15490at 3242.143 kb on + strand, within IAI46_15490at 3242.299 kb on + strand, within IAI46_15490at 3242.299 kb on + strand, within IAI46_15490at 3242.299 kb on + strand, within IAI46_15490at 3242.299 kb on + strand, within IAI46_15490at 3242.300 kb on - strand, within IAI46_15490at 3242.305 kb on + strand, within IAI46_15490at 3242.449 kb on + strand, within IAI46_15490at 3242.716 kb on + strand, within IAI46_15490at 3242.716 kb on + strand, within IAI46_15490at 3242.716 kb on + strand, within IAI46_15490at 3242.717 kb on - strand, within IAI46_15490at 3242.819 kb on - strand, within IAI46_15490at 3243.259 kb on + strand, within IAI46_15490at 3243.259 kb on + strand, within IAI46_15490at 3243.259 kb on + strand, within IAI46_15490at 3243.260 kb on - strand, within IAI46_15490at 3243.260 kb on - strand, within IAI46_15490at 3243.260 kb on - strand, within IAI46_15490at 3243.260 kb on - strand, within IAI46_15490at 3243.270 kb on + strand, within IAI46_15490at 3243.270 kb on + strand, within IAI46_15490at 3243.364 kb on + strand, within IAI46_15490at 3243.365 kb on - strand, within IAI46_15490at 3243.365 kb on - strand, within IAI46_15490at 3243.466 kb on + strand, within IAI46_15490at 3243.466 kb on + strand, within IAI46_15490at 3243.467 kb on - strand, within IAI46_15490at 3243.524 kb on - strand, within IAI46_15490at 3243.524 kb on - strand, within IAI46_15490at 3243.578 kb on - strand, within IAI46_15490at 3244.115 kb on + strandat 3244.116 kb on - strandat 3244.116 kb on - strandat 3244.131 kb on - strandat 3244.275 kb on - strand, within IAI46_15495at 3244.318 kb on + strand, within IAI46_15495at 3244.373 kb on + strand, within IAI46_15495at 3244.373 kb on + strand, within IAI46_15495at 3244.394 kb on + strand, within IAI46_15495at 3244.394 kb on + strand, within IAI46_15495at 3244.394 kb on + strand, within IAI46_15495at 3244.395 kb on - strand, within IAI46_15495at 3244.395 kb on - strand, within IAI46_15495at 3244.406 kb on + strand, within IAI46_15495at 3244.406 kb on + strand, within IAI46_15495at 3244.406 kb on + strand, within IAI46_15495at 3244.508 kb on + strand, within IAI46_15495at 3244.560 kb on + strand, within IAI46_15495at 3244.560 kb on + strand, within IAI46_15495at 3244.562 kb on + strand, within IAI46_15495at 3244.562 kb on + strand, within IAI46_15495at 3244.562 kb on + strand, within IAI46_15495at 3244.562 kb on + strand, within IAI46_15495at 3244.562 kb on + strand, within IAI46_15495at 3244.562 kb on + strand, within IAI46_15495at 3244.562 kb on + strand, within IAI46_15495at 3244.562 kb on + strand, within IAI46_15495at 3244.562 kb on + strand, within IAI46_15495at 3244.566 kb on + strand, within IAI46_15495at 3244.567 kb on - strand, within IAI46_15495at 3244.576 kb on - strand, within IAI46_15495at 3244.585 kb on + strand, within IAI46_15495at 3244.586 kb on - strand, within IAI46_15495at 3244.669 kb on + strand, within IAI46_15495at 3244.670 kb on - strand, within IAI46_15495at 3244.984 kb on + strand, within IAI46_15495at 3244.996 kb on - strand, within IAI46_15495at 3245.027 kb on + strand, within IAI46_15495at 3245.082 kb on + strandat 3245.083 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
remove
3,240,665 + IAI46_15480 0.73 +0.4
3,240,665 + IAI46_15480 0.73 +0.6
3,240,666 - IAI46_15480 0.73 -1.0
3,240,666 - IAI46_15480 0.73 -0.1
3,240,737 + IAI46_15480 0.86 -0.4
3,240,803 + -0.4
3,240,804 - +0.5
3,240,887 - -1.3
3,240,914 + -0.0
3,240,914 + +0.1
3,241,186 + IAI46_15485 0.45 +0.5
3,241,187 - IAI46_15485 0.45 -0.4
3,241,375 + IAI46_15485 0.73 -0.6
3,241,376 - IAI46_15485 0.73 +0.5
3,241,429 + IAI46_15485 0.81 -0.5
3,241,429 + IAI46_15485 0.81 -0.5
3,241,429 + IAI46_15485 0.81 +1.0
3,241,430 - IAI46_15485 0.81 +1.3
3,241,430 - IAI46_15485 0.81 -0.3
3,241,430 - IAI46_15485 0.81 +0.7
3,241,817 - +1.4
3,242,092 + IAI46_15490 0.19 -0.1
3,242,093 - IAI46_15490 0.19 -1.4
3,242,143 + IAI46_15490 0.21 -0.1
3,242,143 + IAI46_15490 0.21 +0.5
3,242,299 + IAI46_15490 0.27 +0.2
3,242,299 + IAI46_15490 0.27 +0.2
3,242,299 + IAI46_15490 0.27 +0.6
3,242,299 + IAI46_15490 0.27 -1.5
3,242,300 - IAI46_15490 0.27 -1.8
3,242,305 + IAI46_15490 0.27 +0.5
3,242,449 + IAI46_15490 0.33 +0.6
3,242,716 + IAI46_15490 0.44 +0.7
3,242,716 + IAI46_15490 0.44 +0.7
3,242,716 + IAI46_15490 0.44 +0.7
3,242,717 - IAI46_15490 0.44 -0.2
3,242,819 - IAI46_15490 0.48 +0.2
3,243,259 + IAI46_15490 0.65 -0.0
3,243,259 + IAI46_15490 0.65 +0.7
3,243,259 + IAI46_15490 0.65 +0.0
3,243,260 - IAI46_15490 0.65 -1.2
3,243,260 - IAI46_15490 0.65 -0.9
3,243,260 - IAI46_15490 0.65 -0.0
3,243,260 - IAI46_15490 0.65 +0.3
3,243,270 + IAI46_15490 0.66 -0.7
3,243,270 + IAI46_15490 0.66 -1.8
3,243,364 + IAI46_15490 0.69 -0.2
3,243,365 - IAI46_15490 0.69 -0.3
3,243,365 - IAI46_15490 0.69 -2.8
3,243,466 + IAI46_15490 0.73 +0.1
3,243,466 + IAI46_15490 0.73 +1.2
3,243,467 - IAI46_15490 0.73 +0.2
3,243,524 - IAI46_15490 0.76 +0.4
3,243,524 - IAI46_15490 0.76 +0.6
3,243,578 - IAI46_15490 0.78 -0.1
3,244,115 + -0.9
3,244,116 - +0.1
3,244,116 - -0.4
3,244,131 - +0.6
3,244,275 - IAI46_15495 0.14 +0.5
3,244,318 + IAI46_15495 0.18 -1.5
3,244,373 + IAI46_15495 0.24 +0.8
3,244,373 + IAI46_15495 0.24 +0.2
3,244,394 + IAI46_15495 0.26 +0.3
3,244,394 + IAI46_15495 0.26 +0.6
3,244,394 + IAI46_15495 0.26 -1.4
3,244,395 - IAI46_15495 0.26 +1.0
3,244,395 - IAI46_15495 0.26 +0.4
3,244,406 + IAI46_15495 0.27 +0.0
3,244,406 + IAI46_15495 0.27 +1.6
3,244,406 + IAI46_15495 0.27 +0.0
3,244,508 + IAI46_15495 0.37 +1.3
3,244,560 + IAI46_15495 0.42 -0.0
3,244,560 + IAI46_15495 0.42 +0.6
3,244,562 + IAI46_15495 0.42 -0.1
3,244,562 + IAI46_15495 0.42 +0.7
3,244,562 + IAI46_15495 0.42 +0.1
3,244,562 + IAI46_15495 0.42 +0.5
3,244,562 + IAI46_15495 0.42 -0.4
3,244,562 + IAI46_15495 0.42 -1.8
3,244,562 + IAI46_15495 0.42 -0.3
3,244,562 + IAI46_15495 0.42 -1.2
3,244,562 + IAI46_15495 0.42 +0.3
3,244,566 + IAI46_15495 0.42 +0.6
3,244,567 - IAI46_15495 0.42 +0.3
3,244,576 - IAI46_15495 0.43 +0.2
3,244,585 + IAI46_15495 0.44 +0.9
3,244,586 - IAI46_15495 0.44 -1.1
3,244,669 + IAI46_15495 0.52 -0.1
3,244,670 - IAI46_15495 0.53 +1.2
3,244,984 + IAI46_15495 0.83 +0.3
3,244,996 - IAI46_15495 0.84 +2.0
3,245,027 + IAI46_15495 0.87 +0.1
3,245,082 + +0.2
3,245,083 - +0.1

Or see this region's nucleotide sequence