Experiment: No stress control, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_15385 and IAI46_15390 overlap by 4 nucleotides IAI46_15390 and IAI46_15395 are separated by 2 nucleotides IAI46_15395 and IAI46_15400 are separated by 48 nucleotides
IAI46_15385: IAI46_15385 - ABC transporter ATP-binding protein, at 3,221,229 to 3,222,215
_15385
IAI46_15390: IAI46_15390 - ABC transporter permease, at 3,222,212 to 3,223,162
_15390
IAI46_15395: IAI46_15395 - ABC transporter permease, at 3,223,165 to 3,224,121
_15395
IAI46_15400: IAI46_15400 - ABC transporter substrate-binding protein, at 3,224,170 to 3,225,858
_15400
Position (kb)
3223
3224
3225 Strain fitness (log2 ratio)
-2
-1
0
1 at 3222.414 kb on + strand, within IAI46_15390 at 3222.415 kb on - strand, within IAI46_15390 at 3222.415 kb on - strand, within IAI46_15390 at 3222.511 kb on + strand, within IAI46_15390 at 3222.646 kb on - strand, within IAI46_15390 at 3222.854 kb on - strand, within IAI46_15390 at 3222.877 kb on + strand, within IAI46_15390 at 3222.879 kb on + strand, within IAI46_15390 at 3222.940 kb on + strand, within IAI46_15390 at 3223.091 kb on + strand at 3223.091 kb on + strand at 3223.091 kb on + strand at 3223.162 kb on + strand at 3223.162 kb on + strand at 3223.166 kb on + strand at 3223.167 kb on - strand at 3223.167 kb on - strand at 3223.167 kb on - strand at 3223.193 kb on + strand at 3223.194 kb on - strand at 3223.475 kb on + strand, within IAI46_15395 at 3223.476 kb on - strand, within IAI46_15395 at 3223.476 kb on - strand, within IAI46_15395 at 3223.847 kb on + strand, within IAI46_15395 at 3223.864 kb on - strand, within IAI46_15395 at 3223.880 kb on + strand, within IAI46_15395 at 3223.964 kb on + strand, within IAI46_15395 at 3223.964 kb on + strand, within IAI46_15395 at 3224.216 kb on + strand at 3224.218 kb on + strand at 3224.219 kb on - strand at 3224.219 kb on - strand at 3224.315 kb on + strand at 3224.327 kb on + strand at 3224.327 kb on + strand at 3224.328 kb on - strand at 3224.337 kb on + strand at 3224.401 kb on - strand, within IAI46_15400 at 3224.494 kb on - strand, within IAI46_15400 at 3224.567 kb on + strand, within IAI46_15400 at 3224.567 kb on + strand, within IAI46_15400 at 3224.567 kb on + strand, within IAI46_15400 at 3224.567 kb on + strand, within IAI46_15400 at 3224.571 kb on + strand, within IAI46_15400 at 3224.723 kb on + strand, within IAI46_15400 at 3224.724 kb on - strand, within IAI46_15400 at 3224.729 kb on + strand, within IAI46_15400 at 3224.807 kb on + strand, within IAI46_15400 at 3224.889 kb on + strand, within IAI46_15400 at 3224.913 kb on - strand, within IAI46_15400 at 3225.000 kb on - strand, within IAI46_15400 at 3225.037 kb on - strand, within IAI46_15400 at 3225.037 kb on - strand, within IAI46_15400 at 3225.061 kb on - strand, within IAI46_15400
Per-strain Table
Position Strand Gene LocusTag Fraction No stress control, aerobic remove 3,222,414 + IAI46_15390 0.21 -0.6 3,222,415 - IAI46_15390 0.21 +0.4 3,222,415 - IAI46_15390 0.21 -0.5 3,222,511 + IAI46_15390 0.31 +0.3 3,222,646 - IAI46_15390 0.46 +0.2 3,222,854 - IAI46_15390 0.68 +0.5 3,222,877 + IAI46_15390 0.70 -1.5 3,222,879 + IAI46_15390 0.70 -0.0 3,222,940 + IAI46_15390 0.77 +0.3 3,223,091 + +0.3 3,223,091 + +0.7 3,223,091 + +0.6 3,223,162 + -0.7 3,223,162 + +0.0 3,223,166 + +1.0 3,223,167 - -0.5 3,223,167 - +0.2 3,223,167 - -0.4 3,223,193 + -0.6 3,223,194 - -0.0 3,223,475 + IAI46_15395 0.32 +0.4 3,223,476 - IAI46_15395 0.32 +0.9 3,223,476 - IAI46_15395 0.32 -0.5 3,223,847 + IAI46_15395 0.71 +0.4 3,223,864 - IAI46_15395 0.73 -0.1 3,223,880 + IAI46_15395 0.75 +0.2 3,223,964 + IAI46_15395 0.83 +1.1 3,223,964 + IAI46_15395 0.83 +1.6 3,224,216 + +1.6 3,224,218 + +0.2 3,224,219 - +0.9 3,224,219 - -0.6 3,224,315 + +0.6 3,224,327 + +0.0 3,224,327 + -0.3 3,224,328 - +0.0 3,224,337 + +0.5 3,224,401 - IAI46_15400 0.14 -0.4 3,224,494 - IAI46_15400 0.19 -0.4 3,224,567 + IAI46_15400 0.24 +0.4 3,224,567 + IAI46_15400 0.24 +0.0 3,224,567 + IAI46_15400 0.24 +0.8 3,224,567 + IAI46_15400 0.24 -1.5 3,224,571 + IAI46_15400 0.24 -0.1 3,224,723 + IAI46_15400 0.33 -2.0 3,224,724 - IAI46_15400 0.33 +0.2 3,224,729 + IAI46_15400 0.33 -0.9 3,224,807 + IAI46_15400 0.38 +0.2 3,224,889 + IAI46_15400 0.43 -0.1 3,224,913 - IAI46_15400 0.44 -0.2 3,225,000 - IAI46_15400 0.49 -0.6 3,225,037 - IAI46_15400 0.51 +0.6 3,225,037 - IAI46_15400 0.51 +0.3 3,225,061 - IAI46_15400 0.53 -0.7
Or see this region's nucleotide sequence