Strain Fitness in Serratia liquefaciens MT49 around IAI46_13955

Experiment: No stress control, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_13950 and IAI46_13955 are separated by 308 nucleotidesIAI46_13955 and IAI46_13960 are separated by 249 nucleotidesIAI46_13960 and IAI46_13965 are separated by 105 nucleotides IAI46_13950: IAI46_13950 - aconitate hydratase AcnA, at 2,961,273 to 2,963,945 _13950 IAI46_13955: IAI46_13955 - YmiA family putative membrane protein, at 2,964,254 to 2,964,379 _13955 IAI46_13960: IAI46_13960 - hypothetical protein, at 2,964,629 to 2,965,231 _13960 IAI46_13965: IAI46_13965 - HTH-type transcriptional regulator CysB, at 2,965,337 to 2,966,311 _13965 Position (kb) 2964 2965Strain fitness (log2 ratio) -1 0 1at 2963.364 kb on - strand, within IAI46_13950at 2963.412 kb on - strand, within IAI46_13950at 2963.412 kb on - strand, within IAI46_13950at 2963.477 kb on - strand, within IAI46_13950at 2963.750 kb on + strandat 2963.751 kb on - strandat 2963.751 kb on - strandat 2963.882 kb on - strandat 2963.887 kb on + strandat 2963.888 kb on - strandat 2963.945 kb on + strandat 2963.945 kb on + strandat 2963.946 kb on - strandat 2963.946 kb on - strandat 2963.946 kb on - strandat 2963.946 kb on - strandat 2963.961 kb on + strandat 2963.965 kb on - strandat 2963.965 kb on - strandat 2963.965 kb on - strandat 2963.965 kb on - strandat 2964.021 kb on + strandat 2964.255 kb on + strandat 2964.331 kb on + strand, within IAI46_13955at 2964.337 kb on + strand, within IAI46_13955at 2964.337 kb on + strand, within IAI46_13955at 2964.393 kb on - strandat 2964.465 kb on + strandat 2964.501 kb on + strandat 2964.563 kb on - strandat 2964.581 kb on - strandat 2964.607 kb on - strandat 2964.967 kb on + strand, within IAI46_13960at 2964.968 kb on - strand, within IAI46_13960at 2965.102 kb on + strand, within IAI46_13960at 2965.102 kb on + strand, within IAI46_13960at 2965.264 kb on + strandat 2965.265 kb on - strandat 2965.319 kb on - strandat 2965.319 kb on - strandat 2965.326 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
remove
2,963,364 - IAI46_13950 0.78 +0.1
2,963,412 - IAI46_13950 0.80 +0.9
2,963,412 - IAI46_13950 0.80 -0.8
2,963,477 - IAI46_13950 0.82 +0.9
2,963,750 + +1.4
2,963,751 - +0.8
2,963,751 - -0.1
2,963,882 - -0.5
2,963,887 + +0.7
2,963,888 - -0.2
2,963,945 + +0.5
2,963,945 + +0.0
2,963,946 - +0.5
2,963,946 - +0.2
2,963,946 - -0.1
2,963,946 - +0.7
2,963,961 + -0.8
2,963,965 - +0.1
2,963,965 - -1.7
2,963,965 - -0.7
2,963,965 - -0.5
2,964,021 + +0.6
2,964,255 + +1.3
2,964,331 + IAI46_13955 0.61 +1.1
2,964,337 + IAI46_13955 0.66 -0.7
2,964,337 + IAI46_13955 0.66 +0.1
2,964,393 - -0.5
2,964,465 + +0.4
2,964,501 + -0.7
2,964,563 - -0.0
2,964,581 - +0.4
2,964,607 - -0.5
2,964,967 + IAI46_13960 0.56 -0.1
2,964,968 - IAI46_13960 0.56 -0.6
2,965,102 + IAI46_13960 0.78 +0.3
2,965,102 + IAI46_13960 0.78 +1.3
2,965,264 + +1.3
2,965,265 - +0.7
2,965,319 - -0.6
2,965,319 - +1.3
2,965,326 - -0.2

Or see this region's nucleotide sequence