Experiment: No stress control, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_13950 and IAI46_13955 are separated by 308 nucleotides IAI46_13955 and IAI46_13960 are separated by 249 nucleotides IAI46_13960 and IAI46_13965 are separated by 105 nucleotides
IAI46_13950: IAI46_13950 - aconitate hydratase AcnA, at 2,961,273 to 2,963,945
_13950
IAI46_13955: IAI46_13955 - YmiA family putative membrane protein, at 2,964,254 to 2,964,379
_13955
IAI46_13960: IAI46_13960 - hypothetical protein, at 2,964,629 to 2,965,231
_13960
IAI46_13965: IAI46_13965 - HTH-type transcriptional regulator CysB, at 2,965,337 to 2,966,311
_13965
Position (kb)
2964
2965 Strain fitness (log2 ratio)
-1
0
1 at 2963.364 kb on - strand, within IAI46_13950 at 2963.412 kb on - strand, within IAI46_13950 at 2963.412 kb on - strand, within IAI46_13950 at 2963.477 kb on - strand, within IAI46_13950 at 2963.750 kb on + strand at 2963.751 kb on - strand at 2963.751 kb on - strand at 2963.882 kb on - strand at 2963.887 kb on + strand at 2963.888 kb on - strand at 2963.945 kb on + strand at 2963.945 kb on + strand at 2963.946 kb on - strand at 2963.946 kb on - strand at 2963.946 kb on - strand at 2963.946 kb on - strand at 2963.961 kb on + strand at 2963.965 kb on - strand at 2963.965 kb on - strand at 2963.965 kb on - strand at 2963.965 kb on - strand at 2964.021 kb on + strand at 2964.255 kb on + strand at 2964.331 kb on + strand, within IAI46_13955 at 2964.337 kb on + strand, within IAI46_13955 at 2964.337 kb on + strand, within IAI46_13955 at 2964.393 kb on - strand at 2964.465 kb on + strand at 2964.501 kb on + strand at 2964.563 kb on - strand at 2964.581 kb on - strand at 2964.607 kb on - strand at 2964.967 kb on + strand, within IAI46_13960 at 2964.968 kb on - strand, within IAI46_13960 at 2965.102 kb on + strand, within IAI46_13960 at 2965.102 kb on + strand, within IAI46_13960 at 2965.264 kb on + strand at 2965.265 kb on - strand at 2965.319 kb on - strand at 2965.319 kb on - strand at 2965.326 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction No stress control, aerobic remove 2,963,364 - IAI46_13950 0.78 +0.1 2,963,412 - IAI46_13950 0.80 +0.9 2,963,412 - IAI46_13950 0.80 -0.8 2,963,477 - IAI46_13950 0.82 +0.9 2,963,750 + +1.4 2,963,751 - +0.8 2,963,751 - -0.1 2,963,882 - -0.5 2,963,887 + +0.7 2,963,888 - -0.2 2,963,945 + +0.5 2,963,945 + +0.0 2,963,946 - +0.5 2,963,946 - +0.2 2,963,946 - -0.1 2,963,946 - +0.7 2,963,961 + -0.8 2,963,965 - +0.1 2,963,965 - -1.7 2,963,965 - -0.7 2,963,965 - -0.5 2,964,021 + +0.6 2,964,255 + +1.3 2,964,331 + IAI46_13955 0.61 +1.1 2,964,337 + IAI46_13955 0.66 -0.7 2,964,337 + IAI46_13955 0.66 +0.1 2,964,393 - -0.5 2,964,465 + +0.4 2,964,501 + -0.7 2,964,563 - -0.0 2,964,581 - +0.4 2,964,607 - -0.5 2,964,967 + IAI46_13960 0.56 -0.1 2,964,968 - IAI46_13960 0.56 -0.6 2,965,102 + IAI46_13960 0.78 +0.3 2,965,102 + IAI46_13960 0.78 +1.3 2,965,264 + +1.3 2,965,265 - +0.7 2,965,319 - -0.6 2,965,319 - +1.3 2,965,326 - -0.2
Or see this region's nucleotide sequence