Strain Fitness in Serratia liquefaciens MT49 around IAI46_13900

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13890 and IAI46_13895 are separated by 48 nucleotidesIAI46_13895 and IAI46_13900 are separated by 50 nucleotidesIAI46_13900 and IAI46_13905 are separated by 352 nucleotidesIAI46_13905 and IAI46_13910 are separated by 207 nucleotides IAI46_13890: IAI46_13890 - formate C-acetyltransferase/glycerol dehydratase family glycyl radical enzyme, at 2,950,884 to 2,953,316 _13890 IAI46_13895: IAI46_13895 - DeoR/GlpR transcriptional regulator, at 2,953,365 to 2,954,111 _13895 IAI46_13900: IAI46_13900 - L-ribulose-5-phosphate 4-epimerase, at 2,954,162 to 2,954,857 _13900 IAI46_13905: IAI46_13905 - osmotically-inducible lipoprotein OsmB, at 2,955,210 to 2,955,428 _13905 IAI46_13910: IAI46_13910 - stress response translation initiation inhibitor YciH, at 2,955,636 to 2,955,962 _13910 Position (kb) 2954 2955Strain fitness (log2 ratio) -1 0 1at 2953.264 kb on + strandat 2953.286 kb on + strandat 2953.308 kb on - strandat 2953.308 kb on - strandat 2953.310 kb on + strandat 2953.326 kb on - strandat 2953.387 kb on + strandat 2953.388 kb on - strandat 2953.535 kb on - strand, within IAI46_13895at 2953.600 kb on - strand, within IAI46_13895at 2953.688 kb on + strand, within IAI46_13895at 2953.719 kb on + strand, within IAI46_13895at 2953.776 kb on + strand, within IAI46_13895at 2953.880 kb on + strand, within IAI46_13895at 2953.994 kb on + strand, within IAI46_13895at 2954.087 kb on - strandat 2954.186 kb on - strandat 2954.186 kb on - strandat 2954.202 kb on + strandat 2954.231 kb on - strandat 2954.580 kb on - strand, within IAI46_13900at 2954.716 kb on - strand, within IAI46_13900at 2954.832 kb on - strandat 2954.851 kb on + strandat 2954.852 kb on - strandat 2954.916 kb on - strandat 2954.980 kb on + strandat 2954.984 kb on + strandat 2955.001 kb on + strandat 2955.040 kb on - strandat 2955.040 kb on - strandat 2955.163 kb on - strandat 2955.164 kb on + strandat 2955.164 kb on + strandat 2955.165 kb on - strandat 2955.168 kb on + strandat 2955.168 kb on + strandat 2955.168 kb on + strandat 2955.209 kb on + strandat 2955.224 kb on + strandat 2955.423 kb on - strandat 2955.426 kb on + strandat 2955.492 kb on + strandat 2955.493 kb on - strandat 2955.504 kb on + strandat 2955.527 kb on + strandat 2955.597 kb on + strandat 2955.598 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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2,953,264 + +1.1
2,953,286 + -0.5
2,953,308 - +0.4
2,953,308 - -0.3
2,953,310 + -0.4
2,953,326 - -0.1
2,953,387 + +0.5
2,953,388 - -0.3
2,953,535 - IAI46_13895 0.23 +0.4
2,953,600 - IAI46_13895 0.31 +0.0
2,953,688 + IAI46_13895 0.43 +0.4
2,953,719 + IAI46_13895 0.47 -0.9
2,953,776 + IAI46_13895 0.55 -0.8
2,953,880 + IAI46_13895 0.69 +0.5
2,953,994 + IAI46_13895 0.84 +0.2
2,954,087 - +0.4
2,954,186 - +0.8
2,954,186 - +0.1
2,954,202 + +0.1
2,954,231 - -0.4
2,954,580 - IAI46_13900 0.60 +0.5
2,954,716 - IAI46_13900 0.80 +0.0
2,954,832 - -0.4
2,954,851 + +0.7
2,954,852 - +0.5
2,954,916 - +0.9
2,954,980 + +1.3
2,954,984 + +0.1
2,955,001 + +0.7
2,955,040 - +0.1
2,955,040 - -0.5
2,955,163 - +0.5
2,955,164 + -0.1
2,955,164 + +0.9
2,955,165 - -1.6
2,955,168 + -0.2
2,955,168 + +0.3
2,955,168 + +0.8
2,955,209 + +0.1
2,955,224 + -0.2
2,955,423 - -0.6
2,955,426 + -0.8
2,955,492 + +0.3
2,955,493 - -1.7
2,955,504 + -0.3
2,955,527 + +0.6
2,955,597 + +1.1
2,955,598 - +0.3

Or see this region's nucleotide sequence