Strain Fitness in Serratia liquefaciens MT49 around IAI46_13610

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13605 and IAI46_13610 are separated by 225 nucleotidesIAI46_13610 and IAI46_13615 are separated by 54 nucleotidesIAI46_13615 and IAI46_13620 are separated by 61 nucleotides IAI46_13605: IAI46_13605 - hypothetical protein, at 2,908,010 to 2,908,579 _13605 IAI46_13610: IAI46_13610 - hypothetical protein, at 2,908,805 to 2,909,476 _13610 IAI46_13615: IAI46_13615 - Ig domain-containing protein, at 2,909,531 to 2,910,280 _13615 IAI46_13620: IAI46_13620 - hypothetical protein, at 2,910,342 to 2,910,725 _13620 Position (kb) 2908 2909 2910Strain fitness (log2 ratio) -2 -1 0 1 2at 2907.988 kb on + strandat 2908.018 kb on + strandat 2908.099 kb on + strand, within IAI46_13605at 2908.100 kb on - strand, within IAI46_13605at 2908.124 kb on + strand, within IAI46_13605at 2908.158 kb on - strand, within IAI46_13605at 2908.160 kb on + strand, within IAI46_13605at 2908.161 kb on - strand, within IAI46_13605at 2908.166 kb on + strand, within IAI46_13605at 2908.167 kb on - strand, within IAI46_13605at 2908.228 kb on - strand, within IAI46_13605at 2908.344 kb on + strand, within IAI46_13605at 2908.345 kb on - strand, within IAI46_13605at 2908.357 kb on - strand, within IAI46_13605at 2908.423 kb on - strand, within IAI46_13605at 2908.437 kb on + strand, within IAI46_13605at 2908.438 kb on - strand, within IAI46_13605at 2908.443 kb on + strand, within IAI46_13605at 2908.479 kb on - strand, within IAI46_13605at 2908.479 kb on - strand, within IAI46_13605at 2908.504 kb on + strand, within IAI46_13605at 2908.505 kb on - strand, within IAI46_13605at 2908.505 kb on - strand, within IAI46_13605at 2908.507 kb on + strand, within IAI46_13605at 2908.604 kb on + strandat 2908.604 kb on + strandat 2908.605 kb on - strandat 2908.605 kb on - strandat 2908.619 kb on + strandat 2908.619 kb on + strandat 2908.705 kb on + strandat 2908.720 kb on - strandat 2908.730 kb on + strandat 2908.732 kb on + strandat 2908.788 kb on + strandat 2908.789 kb on - strandat 2908.807 kb on - strandat 2908.853 kb on - strandat 2908.896 kb on + strand, within IAI46_13610at 2908.896 kb on + strand, within IAI46_13610at 2909.017 kb on - strand, within IAI46_13610at 2909.101 kb on + strand, within IAI46_13610at 2909.102 kb on - strand, within IAI46_13610at 2909.105 kb on - strand, within IAI46_13610at 2909.159 kb on - strand, within IAI46_13610at 2909.167 kb on + strand, within IAI46_13610at 2909.168 kb on - strand, within IAI46_13610at 2909.192 kb on - strand, within IAI46_13610at 2909.192 kb on - strand, within IAI46_13610at 2909.220 kb on - strand, within IAI46_13610at 2909.233 kb on - strand, within IAI46_13610at 2909.245 kb on + strand, within IAI46_13610at 2909.298 kb on + strand, within IAI46_13610at 2909.299 kb on - strand, within IAI46_13610at 2909.342 kb on - strand, within IAI46_13610at 2909.342 kb on - strand, within IAI46_13610at 2909.384 kb on + strand, within IAI46_13610at 2909.385 kb on - strand, within IAI46_13610at 2909.395 kb on + strand, within IAI46_13610at 2909.396 kb on - strand, within IAI46_13610at 2909.396 kb on - strand, within IAI46_13610at 2909.532 kb on + strandat 2909.532 kb on + strandat 2909.710 kb on + strand, within IAI46_13615at 2909.711 kb on - strand, within IAI46_13615at 2909.763 kb on - strand, within IAI46_13615at 2909.813 kb on - strand, within IAI46_13615at 2909.855 kb on - strand, within IAI46_13615at 2909.910 kb on + strand, within IAI46_13615at 2909.911 kb on - strand, within IAI46_13615at 2909.911 kb on - strand, within IAI46_13615at 2909.914 kb on + strand, within IAI46_13615at 2909.930 kb on + strand, within IAI46_13615at 2909.995 kb on + strand, within IAI46_13615at 2909.996 kb on - strand, within IAI46_13615at 2909.996 kb on - strand, within IAI46_13615at 2910.019 kb on - strand, within IAI46_13615at 2910.070 kb on - strand, within IAI46_13615at 2910.081 kb on - strand, within IAI46_13615at 2910.134 kb on - strand, within IAI46_13615at 2910.155 kb on - strand, within IAI46_13615at 2910.189 kb on - strand, within IAI46_13615at 2910.333 kb on + strandat 2910.333 kb on + strandat 2910.334 kb on - strandat 2910.334 kb on - strandat 2910.334 kb on - strandat 2910.404 kb on + strand, within IAI46_13620at 2910.405 kb on - strand, within IAI46_13620at 2910.405 kb on - strand, within IAI46_13620at 2910.426 kb on + strand, within IAI46_13620

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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2,907,988 + -0.0
2,908,018 + -0.9
2,908,099 + IAI46_13605 0.16 +0.8
2,908,100 - IAI46_13605 0.16 +0.6
2,908,124 + IAI46_13605 0.20 +0.3
2,908,158 - IAI46_13605 0.26 -0.4
2,908,160 + IAI46_13605 0.26 +1.9
2,908,161 - IAI46_13605 0.26 +0.1
2,908,166 + IAI46_13605 0.27 +0.4
2,908,167 - IAI46_13605 0.28 +0.3
2,908,228 - IAI46_13605 0.38 +1.3
2,908,344 + IAI46_13605 0.59 -0.5
2,908,345 - IAI46_13605 0.59 -0.5
2,908,357 - IAI46_13605 0.61 +0.5
2,908,423 - IAI46_13605 0.72 -0.1
2,908,437 + IAI46_13605 0.75 +0.4
2,908,438 - IAI46_13605 0.75 +0.0
2,908,443 + IAI46_13605 0.76 +0.3
2,908,479 - IAI46_13605 0.82 -0.9
2,908,479 - IAI46_13605 0.82 +0.5
2,908,504 + IAI46_13605 0.87 +0.2
2,908,505 - IAI46_13605 0.87 +1.9
2,908,505 - IAI46_13605 0.87 +0.1
2,908,507 + IAI46_13605 0.87 +0.2
2,908,604 + +2.1
2,908,604 + -0.9
2,908,605 - -1.7
2,908,605 - -1.7
2,908,619 + +0.2
2,908,619 + -0.3
2,908,705 + -0.2
2,908,720 - +0.3
2,908,730 + -0.3
2,908,732 + -0.7
2,908,788 + +0.3
2,908,789 - +0.3
2,908,807 - +1.4
2,908,853 - -0.1
2,908,896 + IAI46_13610 0.14 -1.3
2,908,896 + IAI46_13610 0.14 -0.5
2,909,017 - IAI46_13610 0.32 +1.3
2,909,101 + IAI46_13610 0.44 -1.4
2,909,102 - IAI46_13610 0.44 -2.1
2,909,105 - IAI46_13610 0.45 +0.3
2,909,159 - IAI46_13610 0.53 +0.9
2,909,167 + IAI46_13610 0.54 -0.3
2,909,168 - IAI46_13610 0.54 -0.1
2,909,192 - IAI46_13610 0.58 +0.6
2,909,192 - IAI46_13610 0.58 -1.4
2,909,220 - IAI46_13610 0.62 +0.0
2,909,233 - IAI46_13610 0.64 -2.4
2,909,245 + IAI46_13610 0.65 -0.9
2,909,298 + IAI46_13610 0.73 +0.1
2,909,299 - IAI46_13610 0.74 +0.8
2,909,342 - IAI46_13610 0.80 +1.2
2,909,342 - IAI46_13610 0.80 +0.5
2,909,384 + IAI46_13610 0.86 -1.0
2,909,385 - IAI46_13610 0.86 +0.3
2,909,395 + IAI46_13610 0.88 +0.3
2,909,396 - IAI46_13610 0.88 +0.1
2,909,396 - IAI46_13610 0.88 -1.7
2,909,532 + -0.2
2,909,532 + +0.1
2,909,710 + IAI46_13615 0.24 -0.4
2,909,711 - IAI46_13615 0.24 -0.2
2,909,763 - IAI46_13615 0.31 +0.9
2,909,813 - IAI46_13615 0.38 +0.7
2,909,855 - IAI46_13615 0.43 +0.8
2,909,910 + IAI46_13615 0.51 -0.9
2,909,911 - IAI46_13615 0.51 +0.5
2,909,911 - IAI46_13615 0.51 -0.3
2,909,914 + IAI46_13615 0.51 -1.9
2,909,930 + IAI46_13615 0.53 -0.7
2,909,995 + IAI46_13615 0.62 -1.4
2,909,996 - IAI46_13615 0.62 +0.4
2,909,996 - IAI46_13615 0.62 -0.1
2,910,019 - IAI46_13615 0.65 +1.2
2,910,070 - IAI46_13615 0.72 +0.1
2,910,081 - IAI46_13615 0.73 -0.1
2,910,134 - IAI46_13615 0.80 +0.1
2,910,155 - IAI46_13615 0.83 +1.1
2,910,189 - IAI46_13615 0.88 +0.1
2,910,333 + -1.5
2,910,333 + -1.1
2,910,334 - -0.6
2,910,334 - -0.7
2,910,334 - -0.1
2,910,404 + IAI46_13620 0.16 +0.7
2,910,405 - IAI46_13620 0.16 +0.3
2,910,405 - IAI46_13620 0.16 +0.2
2,910,426 + IAI46_13620 0.22 +0.9

Or see this region's nucleotide sequence