Strain Fitness in Serratia liquefaciens MT49 around IAI46_13310

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13305 and IAI46_13310 are separated by 66 nucleotidesIAI46_13310 and IAI46_13315 are separated by 347 nucleotidesIAI46_13315 and IAI46_13320 are separated by 302 nucleotides IAI46_13305: IAI46_13305 - two-component system sensor histidine kinase RstB, at 2,837,627 to 2,838,931 _13305 IAI46_13310: IAI46_13310 - carboxypeptidase M32, at 2,838,998 to 2,840,494 _13310 IAI46_13315: IAI46_13315 - acid resistance repetitive basic protein Asr, at 2,840,842 to 2,841,147 _13315 IAI46_13320: IAI46_13320 - serine protease, at 2,841,450 to 2,842,271 _13320 Position (kb) 2838 2839 2840 2841Strain fitness (log2 ratio) -2 -1 0 1 2at 2838.014 kb on + strand, within IAI46_13305at 2838.014 kb on + strand, within IAI46_13305at 2838.014 kb on + strand, within IAI46_13305at 2838.015 kb on - strand, within IAI46_13305at 2838.400 kb on + strand, within IAI46_13305at 2838.415 kb on + strand, within IAI46_13305at 2838.454 kb on + strand, within IAI46_13305at 2838.609 kb on + strand, within IAI46_13305at 2838.681 kb on + strand, within IAI46_13305at 2838.688 kb on - strand, within IAI46_13305at 2838.842 kb on + strandat 2838.842 kb on + strandat 2838.981 kb on + strandat 2839.012 kb on + strandat 2839.013 kb on - strandat 2839.013 kb on - strandat 2839.161 kb on + strand, within IAI46_13310at 2839.755 kb on - strand, within IAI46_13310at 2840.000 kb on - strand, within IAI46_13310at 2840.026 kb on - strand, within IAI46_13310at 2840.261 kb on + strand, within IAI46_13310at 2840.261 kb on + strand, within IAI46_13310at 2840.280 kb on - strand, within IAI46_13310at 2840.492 kb on + strandat 2840.493 kb on - strandat 2840.577 kb on + strandat 2840.578 kb on - strandat 2840.618 kb on + strandat 2840.619 kb on - strandat 2840.622 kb on + strandat 2840.633 kb on + strandat 2840.656 kb on - strandat 2840.656 kb on - strandat 2840.723 kb on + strandat 2840.723 kb on + strandat 2840.723 kb on + strandat 2840.724 kb on - strandat 2840.724 kb on - strandat 2840.724 kb on - strandat 2840.728 kb on + strandat 2840.780 kb on - strandat 2841.052 kb on - strand, within IAI46_13315at 2841.145 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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2,838,014 + IAI46_13305 0.30 +0.4
2,838,014 + IAI46_13305 0.30 +0.1
2,838,014 + IAI46_13305 0.30 -0.8
2,838,015 - IAI46_13305 0.30 +0.3
2,838,400 + IAI46_13305 0.59 -0.0
2,838,415 + IAI46_13305 0.60 +0.2
2,838,454 + IAI46_13305 0.63 +0.7
2,838,609 + IAI46_13305 0.75 +1.1
2,838,681 + IAI46_13305 0.81 -0.2
2,838,688 - IAI46_13305 0.81 -0.5
2,838,842 + +0.6
2,838,842 + -0.7
2,838,981 + +0.3
2,839,012 + +0.1
2,839,013 - +0.6
2,839,013 - -0.5
2,839,161 + IAI46_13310 0.11 -0.2
2,839,755 - IAI46_13310 0.51 +0.6
2,840,000 - IAI46_13310 0.67 -0.9
2,840,026 - IAI46_13310 0.69 +0.3
2,840,261 + IAI46_13310 0.84 +2.1
2,840,261 + IAI46_13310 0.84 -0.3
2,840,280 - IAI46_13310 0.86 -0.3
2,840,492 + +0.7
2,840,493 - +0.4
2,840,577 + +1.1
2,840,578 - -0.2
2,840,618 + -1.1
2,840,619 - -2.3
2,840,622 + +0.6
2,840,633 + +0.7
2,840,656 - -1.4
2,840,656 - -1.3
2,840,723 + +1.1
2,840,723 + -0.2
2,840,723 + +0.1
2,840,724 - -1.1
2,840,724 - +0.2
2,840,724 - -0.3
2,840,728 + -0.7
2,840,780 - +0.4
2,841,052 - IAI46_13315 0.69 +0.1
2,841,145 + -0.0

Or see this region's nucleotide sequence