Strain Fitness in Serratia liquefaciens MT49 around IAI46_13160

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13155 and IAI46_13160 are separated by 68 nucleotidesIAI46_13160 and IAI46_13165 overlap by 4 nucleotidesIAI46_13165 and IAI46_13170 are separated by 3 nucleotides IAI46_13155: IAI46_13155 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 2,806,311 to 2,807,615 _13155 IAI46_13160: IAI46_13160 - hypothetical protein, at 2,807,684 to 2,807,941 _13160 IAI46_13165: IAI46_13165 - glutamine amidotransferase, at 2,807,938 to 2,808,651 _13165 IAI46_13170: IAI46_13170 - pyridoxal kinase, at 2,808,655 to 2,809,494 _13170 Position (kb) 2807 2808Strain fitness (log2 ratio) -2 -1 0 1at 2806.693 kb on + strand, within IAI46_13155at 2806.694 kb on - strand, within IAI46_13155at 2806.790 kb on - strand, within IAI46_13155at 2806.790 kb on - strand, within IAI46_13155at 2806.790 kb on - strand, within IAI46_13155at 2806.924 kb on - strand, within IAI46_13155at 2807.325 kb on - strand, within IAI46_13155at 2807.406 kb on - strand, within IAI46_13155at 2807.551 kb on - strandat 2807.633 kb on - strandat 2807.700 kb on + strandat 2807.711 kb on - strand, within IAI46_13160at 2807.711 kb on - strand, within IAI46_13160at 2807.711 kb on - strand, within IAI46_13160at 2807.821 kb on + strand, within IAI46_13160at 2807.822 kb on - strand, within IAI46_13160at 2807.847 kb on + strand, within IAI46_13160at 2807.848 kb on - strand, within IAI46_13160at 2807.891 kb on - strand, within IAI46_13160at 2808.142 kb on + strand, within IAI46_13165at 2808.165 kb on - strand, within IAI46_13165at 2808.287 kb on - strand, within IAI46_13165at 2808.369 kb on + strand, within IAI46_13165at 2808.376 kb on - strand, within IAI46_13165at 2808.415 kb on - strand, within IAI46_13165at 2808.612 kb on - strandat 2808.652 kb on + strandat 2808.721 kb on + strandat 2808.722 kb on - strandat 2808.722 kb on - strandat 2808.817 kb on + strand, within IAI46_13170at 2808.818 kb on - strand, within IAI46_13170at 2808.820 kb on + strand, within IAI46_13170at 2808.821 kb on - strand, within IAI46_13170

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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2,806,693 + IAI46_13155 0.29 +0.8
2,806,694 - IAI46_13155 0.29 +0.1
2,806,790 - IAI46_13155 0.37 +0.6
2,806,790 - IAI46_13155 0.37 -0.1
2,806,790 - IAI46_13155 0.37 -1.1
2,806,924 - IAI46_13155 0.47 -0.5
2,807,325 - IAI46_13155 0.78 +0.3
2,807,406 - IAI46_13155 0.84 -0.4
2,807,551 - +1.4
2,807,633 - -0.5
2,807,700 + -1.5
2,807,711 - IAI46_13160 0.10 -0.5
2,807,711 - IAI46_13160 0.10 +0.0
2,807,711 - IAI46_13160 0.10 +0.0
2,807,821 + IAI46_13160 0.53 -0.1
2,807,822 - IAI46_13160 0.53 +0.0
2,807,847 + IAI46_13160 0.63 -0.1
2,807,848 - IAI46_13160 0.64 +0.4
2,807,891 - IAI46_13160 0.80 -0.1
2,808,142 + IAI46_13165 0.29 +0.6
2,808,165 - IAI46_13165 0.32 +0.5
2,808,287 - IAI46_13165 0.49 +0.5
2,808,369 + IAI46_13165 0.60 +0.2
2,808,376 - IAI46_13165 0.61 -0.3
2,808,415 - IAI46_13165 0.67 -1.3
2,808,612 - +0.8
2,808,652 + +0.1
2,808,721 + -0.8
2,808,722 - -1.0
2,808,722 - -2.0
2,808,817 + IAI46_13170 0.19 -0.5
2,808,818 - IAI46_13170 0.19 -1.3
2,808,820 + IAI46_13170 0.20 +0.0
2,808,821 - IAI46_13170 0.20 -0.8

Or see this region's nucleotide sequence