Strain Fitness in Serratia liquefaciens MT49 around IAI46_13115

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13105 and IAI46_13110 are separated by 28 nucleotidesIAI46_13110 and IAI46_13115 overlap by 4 nucleotidesIAI46_13115 and IAI46_13120 are separated by 88 nucleotidesIAI46_13120 and IAI46_13125 are separated by 3 nucleotidesIAI46_13125 and IAI46_13130 are separated by 0 nucleotides IAI46_13105: IAI46_13105 - branched-chain amino acid ABC transporter substrate-binding protein, at 2,796,511 to 2,797,671 _13105 IAI46_13110: IAI46_13110 - L-2-amino-thiazoline-4-carboxylic acid hydrolase, at 2,797,700 to 2,798,191 _13110 IAI46_13115: IAI46_13115 - Zn-dependent hydrolase, at 2,798,188 to 2,799,414 _13115 IAI46_13120: IAI46_13120 - helix-turn-helix transcriptional regulator, at 2,799,503 to 2,799,850 _13120 IAI46_13125: IAI46_13125 - SRPBCC family protein, at 2,799,854 to 2,800,387 _13125 IAI46_13130: IAI46_13130 - transporter, at 2,800,388 to 2,801,416 _13130 Position (kb) 2798 2799 2800Strain fitness (log2 ratio) -1 0 1at 2797.340 kb on + strand, within IAI46_13105at 2797.450 kb on + strand, within IAI46_13105at 2797.514 kb on - strand, within IAI46_13105at 2797.563 kb on + strandat 2797.746 kb on + strandat 2797.747 kb on - strandat 2797.919 kb on + strand, within IAI46_13110at 2797.919 kb on + strand, within IAI46_13110at 2797.919 kb on + strand, within IAI46_13110at 2797.961 kb on + strand, within IAI46_13110at 2798.018 kb on + strand, within IAI46_13110at 2798.018 kb on + strand, within IAI46_13110at 2798.374 kb on - strand, within IAI46_13115at 2798.609 kb on + strand, within IAI46_13115at 2799.066 kb on - strand, within IAI46_13115at 2799.145 kb on - strand, within IAI46_13115at 2799.145 kb on - strand, within IAI46_13115at 2799.145 kb on - strand, within IAI46_13115at 2799.145 kb on - strand, within IAI46_13115at 2799.297 kb on - strandat 2799.300 kb on + strandat 2799.474 kb on - strandat 2799.492 kb on + strandat 2799.716 kb on - strand, within IAI46_13120at 2799.716 kb on - strand, within IAI46_13120at 2799.770 kb on + strand, within IAI46_13120at 2799.811 kb on - strand, within IAI46_13120at 2799.874 kb on + strandat 2799.874 kb on + strandat 2799.875 kb on - strandat 2799.875 kb on - strandat 2800.012 kb on - strand, within IAI46_13125at 2800.070 kb on + strand, within IAI46_13125at 2800.071 kb on - strand, within IAI46_13125at 2800.072 kb on + strand, within IAI46_13125at 2800.080 kb on + strand, within IAI46_13125at 2800.285 kb on + strand, within IAI46_13125

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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2,797,340 + IAI46_13105 0.71 +0.2
2,797,450 + IAI46_13105 0.81 -0.1
2,797,514 - IAI46_13105 0.86 +0.7
2,797,563 + +0.5
2,797,746 + +0.7
2,797,747 - +0.0
2,797,919 + IAI46_13110 0.45 +0.3
2,797,919 + IAI46_13110 0.45 +0.3
2,797,919 + IAI46_13110 0.45 +0.2
2,797,961 + IAI46_13110 0.53 +0.3
2,798,018 + IAI46_13110 0.65 -0.1
2,798,018 + IAI46_13110 0.65 -1.3
2,798,374 - IAI46_13115 0.15 +0.8
2,798,609 + IAI46_13115 0.34 -0.2
2,799,066 - IAI46_13115 0.72 +0.8
2,799,145 - IAI46_13115 0.78 +0.3
2,799,145 - IAI46_13115 0.78 -0.1
2,799,145 - IAI46_13115 0.78 +0.5
2,799,145 - IAI46_13115 0.78 -1.4
2,799,297 - +0.2
2,799,300 + +1.3
2,799,474 - -0.0
2,799,492 + +0.5
2,799,716 - IAI46_13120 0.61 +0.3
2,799,716 - IAI46_13120 0.61 +0.8
2,799,770 + IAI46_13120 0.77 +0.5
2,799,811 - IAI46_13120 0.89 -0.3
2,799,874 + +0.5
2,799,874 + +0.9
2,799,875 - -0.3
2,799,875 - +0.5
2,800,012 - IAI46_13125 0.30 -1.3
2,800,070 + IAI46_13125 0.40 +0.3
2,800,071 - IAI46_13125 0.41 +1.4
2,800,072 + IAI46_13125 0.41 -0.2
2,800,080 + IAI46_13125 0.42 -0.1
2,800,285 + IAI46_13125 0.81 -0.5

Or see this region's nucleotide sequence