Strain Fitness in Serratia liquefaciens MT49 around IAI46_13090

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13085 and IAI46_13090 are separated by 9 nucleotidesIAI46_13090 and IAI46_13095 overlap by 4 nucleotidesIAI46_13095 and IAI46_13100 overlap by 8 nucleotides IAI46_13085: IAI46_13085 - branched-chain amino acid ABC transporter permease, at 2,792,931 to 2,793,881 _13085 IAI46_13090: IAI46_13090 - ABC transporter ATP-binding protein, at 2,793,891 to 2,795,003 _13090 IAI46_13095: IAI46_13095 - ABC transporter ATP-binding protein, at 2,795,000 to 2,795,770 _13095 IAI46_13100: IAI46_13100 - ABC transporter ATP-binding protein, at 2,795,763 to 2,796,476 _13100 Position (kb) 2793 2794 2795 2796Strain fitness (log2 ratio) -1 0 1at 2792.930 kb on + strandat 2792.937 kb on - strandat 2792.944 kb on + strandat 2792.982 kb on + strandat 2792.982 kb on + strandat 2793.004 kb on - strandat 2793.016 kb on - strandat 2793.100 kb on + strand, within IAI46_13085at 2793.101 kb on - strand, within IAI46_13085at 2793.129 kb on + strand, within IAI46_13085at 2793.191 kb on + strand, within IAI46_13085at 2793.314 kb on - strand, within IAI46_13085at 2793.527 kb on - strand, within IAI46_13085at 2793.814 kb on + strandat 2793.827 kb on - strandat 2793.911 kb on - strandat 2794.007 kb on + strand, within IAI46_13090at 2794.008 kb on - strand, within IAI46_13090at 2794.012 kb on - strand, within IAI46_13090at 2794.044 kb on + strand, within IAI46_13090at 2794.134 kb on + strand, within IAI46_13090at 2794.220 kb on + strand, within IAI46_13090at 2794.309 kb on - strand, within IAI46_13090at 2794.309 kb on - strand, within IAI46_13090at 2794.488 kb on + strand, within IAI46_13090at 2794.497 kb on + strand, within IAI46_13090at 2794.500 kb on + strand, within IAI46_13090at 2794.500 kb on + strand, within IAI46_13090at 2794.501 kb on - strand, within IAI46_13090at 2794.535 kb on + strand, within IAI46_13090at 2794.536 kb on - strand, within IAI46_13090at 2794.999 kb on + strandat 2795.097 kb on - strand, within IAI46_13095at 2795.414 kb on + strand, within IAI46_13095at 2795.463 kb on - strand, within IAI46_13095at 2795.715 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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2,792,930 + -0.3
2,792,937 - -0.6
2,792,944 + +1.5
2,792,982 + -0.7
2,792,982 + -0.3
2,793,004 - +0.0
2,793,016 - +0.6
2,793,100 + IAI46_13085 0.18 -0.4
2,793,101 - IAI46_13085 0.18 -0.0
2,793,129 + IAI46_13085 0.21 +0.2
2,793,191 + IAI46_13085 0.27 -0.0
2,793,314 - IAI46_13085 0.40 +0.9
2,793,527 - IAI46_13085 0.63 -1.5
2,793,814 + +1.0
2,793,827 - -0.7
2,793,911 - -0.4
2,794,007 + IAI46_13090 0.10 +0.5
2,794,008 - IAI46_13090 0.11 +0.6
2,794,012 - IAI46_13090 0.11 -0.2
2,794,044 + IAI46_13090 0.14 -0.5
2,794,134 + IAI46_13090 0.22 +1.3
2,794,220 + IAI46_13090 0.30 -0.7
2,794,309 - IAI46_13090 0.38 +0.3
2,794,309 - IAI46_13090 0.38 +0.9
2,794,488 + IAI46_13090 0.54 -0.1
2,794,497 + IAI46_13090 0.54 +0.3
2,794,500 + IAI46_13090 0.55 -0.3
2,794,500 + IAI46_13090 0.55 -0.0
2,794,501 - IAI46_13090 0.55 -0.5
2,794,535 + IAI46_13090 0.58 -0.5
2,794,536 - IAI46_13090 0.58 +0.5
2,794,999 + -1.3
2,795,097 - IAI46_13095 0.13 +0.0
2,795,414 + IAI46_13095 0.54 -0.5
2,795,463 - IAI46_13095 0.60 +0.5
2,795,715 + +0.0

Or see this region's nucleotide sequence