Strain Fitness in Serratia liquefaciens MT49 around IAI46_12520

Experiment: No stress control, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_12510 and IAI46_12515 overlap by 4 nucleotidesIAI46_12515 and IAI46_12520 are separated by 12 nucleotidesIAI46_12520 and IAI46_12525 are separated by 22 nucleotidesIAI46_12525 and IAI46_12530 are separated by 4 nucleotides IAI46_12510: IAI46_12510 - NADH-quinone oxidoreductase subunit B family protein, at 2,659,703 to 2,660,500 _12510 IAI46_12515: IAI46_12515 - 4Fe-4S dicluster domain-containing protein, at 2,660,497 to 2,661,042 _12515 IAI46_12520: IAI46_12520 - hydrogenase large subunit, at 2,661,055 to 2,662,758 _12520 IAI46_12525: IAI46_12525 - respiratory chain complex I subunit 1 family protein, at 2,662,781 to 2,663,722 _12525 IAI46_12530: IAI46_12530 - proton-conducting membrane transporter, at 2,663,727 to 2,665,595 _12530 Position (kb) 2661 2662 2663Strain fitness (log2 ratio) -2 -1 0 1at 2660.076 kb on + strand, within IAI46_12510at 2660.077 kb on - strand, within IAI46_12510at 2660.077 kb on - strand, within IAI46_12510at 2660.077 kb on - strand, within IAI46_12510at 2660.180 kb on - strand, within IAI46_12510at 2660.539 kb on - strandat 2660.649 kb on - strand, within IAI46_12515at 2660.736 kb on + strand, within IAI46_12515at 2660.920 kb on + strand, within IAI46_12515at 2661.028 kb on - strandat 2661.133 kb on + strandat 2661.167 kb on + strandat 2661.167 kb on + strandat 2661.213 kb on + strandat 2661.213 kb on + strandat 2661.230 kb on + strand, within IAI46_12520at 2661.231 kb on - strand, within IAI46_12520at 2661.479 kb on + strand, within IAI46_12520at 2661.603 kb on - strand, within IAI46_12520at 2661.666 kb on + strand, within IAI46_12520at 2661.788 kb on + strand, within IAI46_12520at 2661.858 kb on + strand, within IAI46_12520at 2661.858 kb on + strand, within IAI46_12520at 2662.008 kb on - strand, within IAI46_12520at 2662.074 kb on - strand, within IAI46_12520at 2662.118 kb on + strand, within IAI46_12520at 2662.257 kb on - strand, within IAI46_12520at 2662.533 kb on - strand, within IAI46_12520at 2662.533 kb on - strand, within IAI46_12520at 2662.535 kb on + strand, within IAI46_12520at 2662.608 kb on - strandat 2662.610 kb on + strandat 2662.611 kb on - strandat 2662.731 kb on - strandat 2662.778 kb on + strandat 2662.779 kb on - strandat 2662.880 kb on - strand, within IAI46_12525at 2663.146 kb on + strand, within IAI46_12525at 2663.148 kb on + strand, within IAI46_12525at 2663.149 kb on - strand, within IAI46_12525at 2663.404 kb on - strand, within IAI46_12525at 2663.544 kb on - strand, within IAI46_12525at 2663.544 kb on - strand, within IAI46_12525at 2663.709 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
remove
2,660,076 + IAI46_12510 0.47 +0.7
2,660,077 - IAI46_12510 0.47 -2.3
2,660,077 - IAI46_12510 0.47 -0.7
2,660,077 - IAI46_12510 0.47 -0.3
2,660,180 - IAI46_12510 0.60 -0.5
2,660,539 - +1.0
2,660,649 - IAI46_12515 0.28 -0.2
2,660,736 + IAI46_12515 0.44 +1.0
2,660,920 + IAI46_12515 0.77 -0.1
2,661,028 - +0.1
2,661,133 + -0.2
2,661,167 + -0.7
2,661,167 + -0.2
2,661,213 + -1.0
2,661,213 + -1.7
2,661,230 + IAI46_12520 0.10 +0.8
2,661,231 - IAI46_12520 0.10 +1.0
2,661,479 + IAI46_12520 0.25 +0.1
2,661,603 - IAI46_12520 0.32 +0.7
2,661,666 + IAI46_12520 0.36 +0.4
2,661,788 + IAI46_12520 0.43 +0.0
2,661,858 + IAI46_12520 0.47 +1.3
2,661,858 + IAI46_12520 0.47 +1.3
2,662,008 - IAI46_12520 0.56 +0.1
2,662,074 - IAI46_12520 0.60 +0.8
2,662,118 + IAI46_12520 0.62 -0.6
2,662,257 - IAI46_12520 0.71 -1.1
2,662,533 - IAI46_12520 0.87 +1.5
2,662,533 - IAI46_12520 0.87 -0.6
2,662,535 + IAI46_12520 0.87 -1.6
2,662,608 - -0.5
2,662,610 + -0.1
2,662,611 - -0.5
2,662,731 - +0.8
2,662,778 + +1.1
2,662,779 - -0.0
2,662,880 - IAI46_12525 0.11 +0.4
2,663,146 + IAI46_12525 0.39 +0.5
2,663,148 + IAI46_12525 0.39 -0.2
2,663,149 - IAI46_12525 0.39 +1.1
2,663,404 - IAI46_12525 0.66 +0.8
2,663,544 - IAI46_12525 0.81 -0.6
2,663,544 - IAI46_12525 0.81 +0.3
2,663,709 + +0.4

Or see this region's nucleotide sequence