Strain Fitness in Serratia liquefaciens MT49 around IAI46_12040

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12030 and IAI46_12035 are separated by 5 nucleotidesIAI46_12035 and IAI46_12040 overlap by 1 nucleotidesIAI46_12040 and IAI46_12045 overlap by 11 nucleotidesIAI46_12045 and IAI46_12050 are separated by 11 nucleotides IAI46_12030: IAI46_12030 - ABC transporter permease, at 2,545,647 to 2,546,663 _12030 IAI46_12035: IAI46_12035 - D,D-dipeptide ABC transporter permease, at 2,546,669 to 2,547,556 _12035 IAI46_12040: IAI46_12040 - ABC transporter ATP-binding protein, at 2,547,556 to 2,548,560 _12040 IAI46_12045: IAI46_12045 - ABC transporter ATP-binding protein, at 2,548,550 to 2,549,497 _12045 IAI46_12050: IAI46_12050 - acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase, at 2,549,509 to 2,550,297 _12050 Position (kb) 2547 2548 2549Strain fitness (log2 ratio) -2 -1 0 1 2at 2546.706 kb on + strandat 2547.049 kb on - strand, within IAI46_12035at 2547.176 kb on + strand, within IAI46_12035at 2547.176 kb on + strand, within IAI46_12035at 2547.177 kb on - strand, within IAI46_12035at 2547.225 kb on - strand, within IAI46_12035at 2547.225 kb on - strand, within IAI46_12035at 2547.226 kb on + strand, within IAI46_12035at 2547.226 kb on + strand, within IAI46_12035at 2547.226 kb on + strand, within IAI46_12035at 2547.227 kb on - strand, within IAI46_12035at 2547.227 kb on - strand, within IAI46_12035at 2547.409 kb on + strand, within IAI46_12035at 2547.431 kb on + strand, within IAI46_12035at 2547.431 kb on + strand, within IAI46_12035at 2548.039 kb on - strand, within IAI46_12040at 2548.241 kb on - strand, within IAI46_12040at 2548.241 kb on - strand, within IAI46_12040at 2548.249 kb on + strand, within IAI46_12040at 2548.250 kb on - strand, within IAI46_12040at 2548.312 kb on + strand, within IAI46_12040at 2548.312 kb on + strand, within IAI46_12040at 2548.325 kb on + strand, within IAI46_12040at 2548.325 kb on + strand, within IAI46_12040at 2548.464 kb on + strandat 2548.477 kb on - strandat 2548.607 kb on + strandat 2548.607 kb on + strandat 2548.634 kb on + strandat 2548.634 kb on + strandat 2548.889 kb on + strand, within IAI46_12045at 2548.890 kb on - strand, within IAI46_12045at 2549.017 kb on + strand, within IAI46_12045at 2549.017 kb on + strand, within IAI46_12045at 2549.074 kb on + strand, within IAI46_12045at 2549.074 kb on + strand, within IAI46_12045at 2549.075 kb on - strand, within IAI46_12045at 2549.090 kb on - strand, within IAI46_12045at 2549.118 kb on + strand, within IAI46_12045at 2549.118 kb on + strand, within IAI46_12045at 2549.153 kb on + strand, within IAI46_12045at 2549.154 kb on - strand, within IAI46_12045at 2549.216 kb on + strand, within IAI46_12045at 2549.217 kb on - strand, within IAI46_12045at 2549.490 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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2,546,706 + -0.7
2,547,049 - IAI46_12035 0.43 +0.4
2,547,176 + IAI46_12035 0.57 -0.2
2,547,176 + IAI46_12035 0.57 -1.0
2,547,177 - IAI46_12035 0.57 +0.2
2,547,225 - IAI46_12035 0.63 +0.7
2,547,225 - IAI46_12035 0.63 -2.2
2,547,226 + IAI46_12035 0.63 -0.1
2,547,226 + IAI46_12035 0.63 +0.4
2,547,226 + IAI46_12035 0.63 +0.9
2,547,227 - IAI46_12035 0.63 -1.9
2,547,227 - IAI46_12035 0.63 -0.8
2,547,409 + IAI46_12035 0.83 -1.3
2,547,431 + IAI46_12035 0.86 +0.0
2,547,431 + IAI46_12035 0.86 +0.1
2,548,039 - IAI46_12040 0.48 +0.7
2,548,241 - IAI46_12040 0.68 +0.2
2,548,241 - IAI46_12040 0.68 -0.4
2,548,249 + IAI46_12040 0.69 -0.1
2,548,250 - IAI46_12040 0.69 +1.0
2,548,312 + IAI46_12040 0.75 +0.3
2,548,312 + IAI46_12040 0.75 +0.1
2,548,325 + IAI46_12040 0.77 +1.0
2,548,325 + IAI46_12040 0.77 -0.5
2,548,464 + +0.0
2,548,477 - +0.6
2,548,607 + -0.3
2,548,607 + +0.7
2,548,634 + +0.5
2,548,634 + +1.3
2,548,889 + IAI46_12045 0.36 +0.2
2,548,890 - IAI46_12045 0.36 -0.7
2,549,017 + IAI46_12045 0.49 +0.4
2,549,017 + IAI46_12045 0.49 -0.5
2,549,074 + IAI46_12045 0.55 +1.0
2,549,074 + IAI46_12045 0.55 +2.5
2,549,075 - IAI46_12045 0.55 -0.7
2,549,090 - IAI46_12045 0.57 -0.8
2,549,118 + IAI46_12045 0.60 -0.9
2,549,118 + IAI46_12045 0.60 -0.3
2,549,153 + IAI46_12045 0.64 -0.1
2,549,154 - IAI46_12045 0.64 +0.8
2,549,216 + IAI46_12045 0.70 -0.3
2,549,217 - IAI46_12045 0.70 +1.0
2,549,490 + -0.7

Or see this region's nucleotide sequence