Strain Fitness in Serratia liquefaciens MT49 around IAI46_10840

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10830 and IAI46_10835 are separated by 8 nucleotidesIAI46_10835 and IAI46_10840 are separated by 65 nucleotidesIAI46_10840 and IAI46_10845 are separated by 183 nucleotides IAI46_10830: IAI46_10830 - 2-aminoethylphosphonate--pyruvate transaminase, at 2,290,207 to 2,291,310 _10830 IAI46_10835: IAI46_10835 - phosphonoacetaldehyde hydrolase, at 2,291,319 to 2,292,128 _10835 IAI46_10840: IAI46_10840 - L-cystine transporter, at 2,292,194 to 2,293,585 _10840 IAI46_10845: IAI46_10845 - metal-dependent hydrolase, at 2,293,769 to 2,294,317 _10845 Position (kb) 2292 2293 2294Strain fitness (log2 ratio) -1 0 1at 2291.204 kb on + strandat 2291.411 kb on + strand, within IAI46_10835at 2291.412 kb on - strand, within IAI46_10835at 2291.680 kb on + strand, within IAI46_10835at 2291.680 kb on + strand, within IAI46_10835at 2291.680 kb on + strand, within IAI46_10835at 2291.680 kb on + strand, within IAI46_10835at 2292.060 kb on - strandat 2292.060 kb on - strandat 2292.233 kb on - strandat 2292.275 kb on - strandat 2292.287 kb on - strandat 2292.538 kb on - strand, within IAI46_10840at 2292.569 kb on - strand, within IAI46_10840at 2292.699 kb on - strand, within IAI46_10840at 2292.699 kb on - strand, within IAI46_10840at 2292.699 kb on - strand, within IAI46_10840at 2292.784 kb on - strand, within IAI46_10840at 2292.802 kb on + strand, within IAI46_10840at 2292.829 kb on + strand, within IAI46_10840at 2293.033 kb on + strand, within IAI46_10840at 2293.034 kb on - strand, within IAI46_10840at 2293.034 kb on - strand, within IAI46_10840at 2293.126 kb on - strand, within IAI46_10840at 2293.126 kb on - strand, within IAI46_10840at 2293.126 kb on - strand, within IAI46_10840at 2293.205 kb on - strand, within IAI46_10840at 2293.209 kb on - strand, within IAI46_10840at 2293.514 kb on - strandat 2293.565 kb on - strandat 2293.565 kb on - strandat 2293.568 kb on - strandat 2293.611 kb on + strandat 2293.611 kb on + strandat 2293.652 kb on + strandat 2293.653 kb on - strandat 2293.731 kb on - strandat 2293.748 kb on + strandat 2293.749 kb on - strandat 2293.749 kb on - strandat 2293.787 kb on + strandat 2293.836 kb on + strand, within IAI46_10845at 2293.940 kb on + strand, within IAI46_10845at 2293.940 kb on + strand, within IAI46_10845at 2293.967 kb on - strand, within IAI46_10845at 2294.318 kb on - strandat 2294.438 kb on + strandat 2294.456 kb on - strandat 2294.584 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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2,291,204 + -0.1
2,291,411 + IAI46_10835 0.11 -0.0
2,291,412 - IAI46_10835 0.11 -0.2
2,291,680 + IAI46_10835 0.45 +0.2
2,291,680 + IAI46_10835 0.45 -0.1
2,291,680 + IAI46_10835 0.45 +0.2
2,291,680 + IAI46_10835 0.45 -0.3
2,292,060 - -1.6
2,292,060 - -0.5
2,292,233 - +0.7
2,292,275 - -0.3
2,292,287 - +0.4
2,292,538 - IAI46_10840 0.25 +0.4
2,292,569 - IAI46_10840 0.27 +0.3
2,292,699 - IAI46_10840 0.36 -0.2
2,292,699 - IAI46_10840 0.36 +0.5
2,292,699 - IAI46_10840 0.36 -1.0
2,292,784 - IAI46_10840 0.42 +1.7
2,292,802 + IAI46_10840 0.44 +0.9
2,292,829 + IAI46_10840 0.46 -0.7
2,293,033 + IAI46_10840 0.60 +0.3
2,293,034 - IAI46_10840 0.60 -0.5
2,293,034 - IAI46_10840 0.60 -0.5
2,293,126 - IAI46_10840 0.67 -0.2
2,293,126 - IAI46_10840 0.67 -0.1
2,293,126 - IAI46_10840 0.67 +0.0
2,293,205 - IAI46_10840 0.73 +0.3
2,293,209 - IAI46_10840 0.73 +0.1
2,293,514 - +0.5
2,293,565 - -0.1
2,293,565 - +0.5
2,293,568 - -0.7
2,293,611 + -0.3
2,293,611 + +0.1
2,293,652 + -0.3
2,293,653 - -0.6
2,293,731 - +0.6
2,293,748 + +0.1
2,293,749 - -0.1
2,293,749 - +0.0
2,293,787 + +0.1
2,293,836 + IAI46_10845 0.12 -0.3
2,293,940 + IAI46_10845 0.31 +0.5
2,293,940 + IAI46_10845 0.31 -0.8
2,293,967 - IAI46_10845 0.36 +0.1
2,294,318 - +0.5
2,294,438 + +0.5
2,294,456 - +0.8
2,294,584 - +0.6

Or see this region's nucleotide sequence