Strain Fitness in Serratia liquefaciens MT49 around IAI46_09425

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09410 and IAI46_09415 are separated by 1 nucleotidesIAI46_09415 and IAI46_09420 are separated by 64 nucleotidesIAI46_09420 and IAI46_09425 are separated by 57 nucleotidesIAI46_09425 and IAI46_09430 are separated by 22 nucleotidesIAI46_09430 and IAI46_09435 are separated by 108 nucleotides IAI46_09410: IAI46_09410 - hypothetical protein, at 2,003,237 to 2,003,647 _09410 IAI46_09415: IAI46_09415 - hypothetical protein, at 2,003,649 to 2,003,903 _09415 IAI46_09420: IAI46_09420 - hypothetical protein, at 2,003,968 to 2,004,288 _09420 IAI46_09425: IAI46_09425 - hypothetical protein, at 2,004,346 to 2,004,606 _09425 IAI46_09430: IAI46_09430 - hypothetical protein, at 2,004,629 to 2,005,015 _09430 IAI46_09435: IAI46_09435 - terminase small subunit, at 2,005,124 to 2,005,672 _09435 Position (kb) 2004 2005Strain fitness (log2 ratio) -1 0 1 2at 2004.410 kb on + strand, within IAI46_09425at 2004.478 kb on + strand, within IAI46_09425at 2004.479 kb on - strand, within IAI46_09425at 2004.479 kb on - strand, within IAI46_09425at 2004.479 kb on - strand, within IAI46_09425at 2004.522 kb on - strand, within IAI46_09425at 2004.605 kb on - strandat 2004.724 kb on - strand, within IAI46_09430at 2004.742 kb on + strand, within IAI46_09430at 2004.853 kb on - strand, within IAI46_09430at 2004.870 kb on + strand, within IAI46_09430at 2005.003 kb on - strandat 2005.003 kb on - strandat 2005.175 kb on + strandat 2005.175 kb on + strandat 2005.175 kb on + strandat 2005.175 kb on + strandat 2005.175 kb on + strandat 2005.176 kb on - strandat 2005.176 kb on - strandat 2005.176 kb on - strandat 2005.176 kb on - strandat 2005.177 kb on + strandat 2005.460 kb on - strand, within IAI46_09435

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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2,004,410 + IAI46_09425 0.25 -1.3
2,004,478 + IAI46_09425 0.51 +0.4
2,004,479 - IAI46_09425 0.51 +0.4
2,004,479 - IAI46_09425 0.51 -0.1
2,004,479 - IAI46_09425 0.51 +0.2
2,004,522 - IAI46_09425 0.67 +2.6
2,004,605 - -0.7
2,004,724 - IAI46_09430 0.25 +0.1
2,004,742 + IAI46_09430 0.29 +0.6
2,004,853 - IAI46_09430 0.58 +0.9
2,004,870 + IAI46_09430 0.62 +0.1
2,005,003 - -1.0
2,005,003 - +0.9
2,005,175 + -0.3
2,005,175 + +0.1
2,005,175 + +2.1
2,005,175 + +1.0
2,005,175 + +0.4
2,005,176 - -0.3
2,005,176 - +0.2
2,005,176 - -0.1
2,005,176 - +0.1
2,005,177 + -1.1
2,005,460 - IAI46_09435 0.61 +0.0

Or see this region's nucleotide sequence