Strain Fitness in Serratia liquefaciens MT49 around IAI46_08555

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08550 and IAI46_08555 are separated by 660 nucleotidesIAI46_08555 and IAI46_08560 are separated by 120 nucleotides IAI46_08550: IAI46_08550 - thioredoxin-disulfide reductase, at 1,820,962 to 1,821,933 _08550 IAI46_08555: IAI46_08555 - leucine-responsive transcriptional regulator Lrp, at 1,822,594 to 1,823,088 _08555 IAI46_08560: IAI46_08560 - DNA translocase FtsK 4TM domain-containing protein, at 1,823,209 to 1,826,784 _08560 Position (kb) 1822 1823 1824Strain fitness (log2 ratio) -2 -1 0 1 2at 1821.624 kb on - strand, within IAI46_08550at 1821.682 kb on - strand, within IAI46_08550at 1821.682 kb on - strand, within IAI46_08550at 1821.682 kb on - strand, within IAI46_08550at 1821.682 kb on - strand, within IAI46_08550at 1821.730 kb on - strand, within IAI46_08550at 1821.730 kb on - strand, within IAI46_08550at 1821.730 kb on - strand, within IAI46_08550at 1821.878 kb on + strandat 1821.879 kb on - strandat 1821.879 kb on - strandat 1821.907 kb on + strandat 1822.092 kb on + strandat 1822.097 kb on + strandat 1822.160 kb on - strandat 1822.199 kb on - strandat 1822.203 kb on - strandat 1822.217 kb on - strandat 1822.232 kb on + strandat 1822.294 kb on + strandat 1822.295 kb on - strandat 1822.325 kb on + strandat 1822.432 kb on + strandat 1822.495 kb on + strandat 1822.532 kb on + strandat 1822.590 kb on - strandat 1822.590 kb on - strandat 1822.592 kb on + strandat 1822.606 kb on - strandat 1822.677 kb on + strand, within IAI46_08555at 1822.677 kb on + strand, within IAI46_08555at 1822.677 kb on + strand, within IAI46_08555at 1822.730 kb on + strand, within IAI46_08555at 1822.731 kb on - strand, within IAI46_08555at 1822.798 kb on + strand, within IAI46_08555at 1822.798 kb on + strand, within IAI46_08555at 1822.977 kb on + strand, within IAI46_08555at 1822.978 kb on - strand, within IAI46_08555at 1823.028 kb on + strand, within IAI46_08555at 1823.028 kb on + strand, within IAI46_08555at 1823.028 kb on + strand, within IAI46_08555at 1823.028 kb on + strand, within IAI46_08555at 1823.032 kb on + strand, within IAI46_08555at 1823.039 kb on + strandat 1823.176 kb on + strandat 1823.176 kb on + strandat 1823.176 kb on + strandat 1823.185 kb on + strandat 1823.297 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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1,821,624 - IAI46_08550 0.68 -0.3
1,821,682 - IAI46_08550 0.74 +0.1
1,821,682 - IAI46_08550 0.74 +0.4
1,821,682 - IAI46_08550 0.74 -0.6
1,821,682 - IAI46_08550 0.74 +0.4
1,821,730 - IAI46_08550 0.79 -0.2
1,821,730 - IAI46_08550 0.79 +0.7
1,821,730 - IAI46_08550 0.79 -0.6
1,821,878 + -2.0
1,821,879 - +0.1
1,821,879 - +0.4
1,821,907 + -1.4
1,822,092 + +1.0
1,822,097 + +0.3
1,822,160 - -0.5
1,822,199 - -0.3
1,822,203 - +0.3
1,822,217 - -0.0
1,822,232 + +1.2
1,822,294 + -0.0
1,822,295 - -2.7
1,822,325 + -1.3
1,822,432 + -0.8
1,822,495 + +0.1
1,822,532 + +0.1
1,822,590 - -1.7
1,822,590 - -1.2
1,822,592 + +0.4
1,822,606 - +0.5
1,822,677 + IAI46_08555 0.17 -0.3
1,822,677 + IAI46_08555 0.17 +0.1
1,822,677 + IAI46_08555 0.17 -0.2
1,822,730 + IAI46_08555 0.27 -1.2
1,822,731 - IAI46_08555 0.28 -0.2
1,822,798 + IAI46_08555 0.41 -0.5
1,822,798 + IAI46_08555 0.41 -0.3
1,822,977 + IAI46_08555 0.77 -0.6
1,822,978 - IAI46_08555 0.78 -0.6
1,823,028 + IAI46_08555 0.88 -2.3
1,823,028 + IAI46_08555 0.88 -0.1
1,823,028 + IAI46_08555 0.88 -0.7
1,823,028 + IAI46_08555 0.88 -0.1
1,823,032 + IAI46_08555 0.88 -0.2
1,823,039 + -0.9
1,823,176 + -0.4
1,823,176 + -0.3
1,823,176 + +0.5
1,823,185 + +1.8
1,823,297 + -1.4

Or see this region's nucleotide sequence