Experiment: No stress control, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_07640 and IAI46_07645 are separated by 205 nucleotides IAI46_07645 and IAI46_07650 are separated by 464 nucleotides
IAI46_07640: IAI46_07640 - winged helix-turn-helix domain-containing protein, at 1,612,415 to 1,613,254
_07640
IAI46_07645: IAI46_07645 - response regulator transcription factor, at 1,613,460 to 1,614,089
_07645
IAI46_07650: IAI46_07650 - common pilus major fimbrillin subunit EcpA, at 1,614,554 to 1,615,141
_07650
Position (kb)
1613
1614
1615 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1612.533 kb on + strand, within IAI46_07640 at 1612.541 kb on - strand, within IAI46_07640 at 1612.598 kb on + strand, within IAI46_07640 at 1612.598 kb on + strand, within IAI46_07640 at 1612.599 kb on - strand, within IAI46_07640 at 1612.621 kb on + strand, within IAI46_07640 at 1612.621 kb on + strand, within IAI46_07640 at 1612.622 kb on - strand, within IAI46_07640 at 1612.642 kb on + strand, within IAI46_07640 at 1612.732 kb on + strand, within IAI46_07640 at 1612.732 kb on + strand, within IAI46_07640 at 1612.733 kb on - strand, within IAI46_07640 at 1612.915 kb on - strand, within IAI46_07640 at 1612.919 kb on - strand, within IAI46_07640 at 1612.919 kb on - strand, within IAI46_07640 at 1612.919 kb on - strand, within IAI46_07640 at 1612.936 kb on + strand, within IAI46_07640 at 1612.943 kb on + strand, within IAI46_07640 at 1612.943 kb on + strand, within IAI46_07640 at 1612.944 kb on - strand, within IAI46_07640 at 1612.976 kb on + strand, within IAI46_07640 at 1612.999 kb on + strand, within IAI46_07640 at 1613.008 kb on + strand, within IAI46_07640 at 1613.049 kb on + strand, within IAI46_07640 at 1613.119 kb on - strand, within IAI46_07640 at 1613.122 kb on - strand, within IAI46_07640 at 1613.136 kb on + strand, within IAI46_07640 at 1613.136 kb on + strand, within IAI46_07640 at 1613.137 kb on - strand, within IAI46_07640 at 1613.190 kb on + strand at 1613.332 kb on + strand at 1613.357 kb on + strand at 1613.387 kb on + strand at 1613.442 kb on + strand at 1613.442 kb on + strand at 1613.443 kb on - strand at 1613.443 kb on - strand at 1613.447 kb on - strand at 1613.447 kb on - strand at 1613.455 kb on - strand at 1613.538 kb on - strand, within IAI46_07645 at 1613.554 kb on + strand, within IAI46_07645 at 1613.559 kb on + strand, within IAI46_07645 at 1613.559 kb on + strand, within IAI46_07645 at 1613.627 kb on - strand, within IAI46_07645 at 1613.637 kb on + strand, within IAI46_07645 at 1613.638 kb on - strand, within IAI46_07645 at 1613.638 kb on - strand, within IAI46_07645 at 1613.719 kb on + strand, within IAI46_07645 at 1613.724 kb on - strand, within IAI46_07645 at 1613.747 kb on - strand, within IAI46_07645 at 1613.776 kb on + strand, within IAI46_07645 at 1613.776 kb on + strand, within IAI46_07645 at 1613.814 kb on + strand, within IAI46_07645 at 1613.814 kb on + strand, within IAI46_07645 at 1613.814 kb on + strand, within IAI46_07645 at 1613.814 kb on + strand, within IAI46_07645 at 1613.845 kb on + strand, within IAI46_07645 at 1613.855 kb on + strand, within IAI46_07645 at 1613.890 kb on + strand, within IAI46_07645 at 1613.890 kb on + strand, within IAI46_07645 at 1613.891 kb on - strand, within IAI46_07645 at 1613.958 kb on - strand, within IAI46_07645 at 1613.967 kb on - strand, within IAI46_07645 at 1613.970 kb on - strand, within IAI46_07645 at 1613.970 kb on - strand, within IAI46_07645 at 1613.984 kb on + strand, within IAI46_07645 at 1614.020 kb on + strand, within IAI46_07645 at 1614.033 kb on - strand at 1614.033 kb on - strand at 1614.047 kb on + strand at 1614.048 kb on - strand at 1614.136 kb on + strand at 1614.165 kb on + strand at 1614.166 kb on - strand at 1614.166 kb on - strand at 1614.240 kb on - strand at 1614.240 kb on - strand at 1614.240 kb on - strand at 1614.243 kb on + strand at 1614.258 kb on + strand at 1614.268 kb on + strand at 1614.269 kb on - strand at 1614.269 kb on - strand at 1614.269 kb on - strand at 1614.272 kb on + strand at 1614.273 kb on - strand at 1614.308 kb on - strand at 1614.308 kb on - strand at 1614.335 kb on - strand at 1614.414 kb on + strand at 1614.415 kb on - strand at 1614.497 kb on - strand at 1614.497 kb on - strand at 1614.511 kb on + strand at 1614.512 kb on - strand at 1614.532 kb on + strand at 1614.628 kb on + strand, within IAI46_07650 at 1614.722 kb on + strand, within IAI46_07650 at 1614.777 kb on + strand, within IAI46_07650 at 1614.777 kb on + strand, within IAI46_07650 at 1614.777 kb on + strand, within IAI46_07650 at 1614.817 kb on + strand, within IAI46_07650 at 1614.818 kb on - strand, within IAI46_07650 at 1614.851 kb on - strand, within IAI46_07650 at 1614.884 kb on + strand, within IAI46_07650 at 1615.030 kb on + strand, within IAI46_07650 at 1615.031 kb on - strand, within IAI46_07650 at 1615.051 kb on + strand, within IAI46_07650
Per-strain Table
Position Strand Gene LocusTag Fraction No stress control, aerobic remove 1,612,533 + IAI46_07640 0.14 +0.0 1,612,541 - IAI46_07640 0.15 -0.9 1,612,598 + IAI46_07640 0.22 -0.7 1,612,598 + IAI46_07640 0.22 +0.3 1,612,599 - IAI46_07640 0.22 +0.2 1,612,621 + IAI46_07640 0.25 +0.8 1,612,621 + IAI46_07640 0.25 +0.3 1,612,622 - IAI46_07640 0.25 +0.2 1,612,642 + IAI46_07640 0.27 +0.9 1,612,732 + IAI46_07640 0.38 -0.1 1,612,732 + IAI46_07640 0.38 -0.3 1,612,733 - IAI46_07640 0.38 -0.5 1,612,915 - IAI46_07640 0.60 -0.0 1,612,919 - IAI46_07640 0.60 -2.7 1,612,919 - IAI46_07640 0.60 +0.2 1,612,919 - IAI46_07640 0.60 +0.4 1,612,936 + IAI46_07640 0.62 -0.0 1,612,943 + IAI46_07640 0.63 -0.0 1,612,943 + IAI46_07640 0.63 +1.5 1,612,944 - IAI46_07640 0.63 -0.5 1,612,976 + IAI46_07640 0.67 +0.1 1,612,999 + IAI46_07640 0.70 -0.3 1,613,008 + IAI46_07640 0.71 -0.2 1,613,049 + IAI46_07640 0.75 -0.0 1,613,119 - IAI46_07640 0.84 -0.3 1,613,122 - IAI46_07640 0.84 -1.0 1,613,136 + IAI46_07640 0.86 +0.3 1,613,136 + IAI46_07640 0.86 +0.3 1,613,137 - IAI46_07640 0.86 -0.5 1,613,190 + -1.3 1,613,332 + -0.3 1,613,357 + -0.4 1,613,387 + +0.4 1,613,442 + +0.5 1,613,442 + +0.7 1,613,443 - -2.8 1,613,443 - +1.1 1,613,447 - -1.0 1,613,447 - +0.3 1,613,455 - +0.1 1,613,538 - IAI46_07645 0.12 -0.3 1,613,554 + IAI46_07645 0.15 +0.5 1,613,559 + IAI46_07645 0.16 +0.6 1,613,559 + IAI46_07645 0.16 +0.6 1,613,627 - IAI46_07645 0.27 +0.9 1,613,637 + IAI46_07645 0.28 -1.5 1,613,638 - IAI46_07645 0.28 +0.0 1,613,638 - IAI46_07645 0.28 +0.4 1,613,719 + IAI46_07645 0.41 -0.6 1,613,724 - IAI46_07645 0.42 +0.0 1,613,747 - IAI46_07645 0.46 +1.3 1,613,776 + IAI46_07645 0.50 -0.5 1,613,776 + IAI46_07645 0.50 +0.9 1,613,814 + IAI46_07645 0.56 +0.3 1,613,814 + IAI46_07645 0.56 -0.2 1,613,814 + IAI46_07645 0.56 +0.2 1,613,814 + IAI46_07645 0.56 +0.4 1,613,845 + IAI46_07645 0.61 +0.8 1,613,855 + IAI46_07645 0.63 +0.6 1,613,890 + IAI46_07645 0.68 -1.9 1,613,890 + IAI46_07645 0.68 +0.8 1,613,891 - IAI46_07645 0.68 +0.6 1,613,958 - IAI46_07645 0.79 -0.1 1,613,967 - IAI46_07645 0.80 -1.0 1,613,970 - IAI46_07645 0.81 -0.6 1,613,970 - IAI46_07645 0.81 -0.6 1,613,984 + IAI46_07645 0.83 +1.0 1,614,020 + IAI46_07645 0.89 -0.6 1,614,033 - +0.2 1,614,033 - -0.2 1,614,047 + +0.9 1,614,048 - +0.8 1,614,136 + +0.9 1,614,165 + -1.6 1,614,166 - +0.2 1,614,166 - -0.0 1,614,240 - +0.7 1,614,240 - +1.0 1,614,240 - +0.1 1,614,243 + +1.1 1,614,258 + +0.6 1,614,268 + -2.0 1,614,269 - +0.4 1,614,269 - -0.3 1,614,269 - -0.4 1,614,272 + +0.2 1,614,273 - -0.2 1,614,308 - -1.6 1,614,308 - -0.5 1,614,335 - +1.0 1,614,414 + +0.8 1,614,415 - +2.1 1,614,497 - -0.8 1,614,497 - -1.4 1,614,511 + +0.9 1,614,512 - -1.0 1,614,532 + +1.0 1,614,628 + IAI46_07650 0.13 -0.0 1,614,722 + IAI46_07650 0.29 +0.5 1,614,777 + IAI46_07650 0.38 +1.1 1,614,777 + IAI46_07650 0.38 +0.4 1,614,777 + IAI46_07650 0.38 -0.6 1,614,817 + IAI46_07650 0.45 +0.5 1,614,818 - IAI46_07650 0.45 +0.0 1,614,851 - IAI46_07650 0.51 -0.3 1,614,884 + IAI46_07650 0.56 +0.8 1,615,030 + IAI46_07650 0.81 -0.1 1,615,031 - IAI46_07650 0.81 +0.3 1,615,051 + IAI46_07650 0.85 -0.0
Or see this region's nucleotide sequence