Strain Fitness in Serratia liquefaciens MT49 around IAI46_07190

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_07185 and IAI46_07190 are separated by 483 nucleotidesIAI46_07190 and IAI46_07195 overlap by 8 nucleotides IAI46_07185: IAI46_07185 - Tar ligand binding domain-containing protein, at 1,517,604 to 1,519,250 _07185 IAI46_07190: IAI46_07190 - FAD/NAD(P)-binding protein, at 1,519,734 to 1,521,128 _07190 IAI46_07195: IAI46_07195 - dimethyl sulfone monooxygenase SfnG, at 1,521,121 to 1,522,212 _07195 Position (kb) 1519 1520 1521 1522Strain fitness (log2 ratio) -1 0 1at 1518.746 kb on - strand, within IAI46_07185at 1518.746 kb on - strand, within IAI46_07185at 1518.746 kb on - strand, within IAI46_07185at 1518.792 kb on - strand, within IAI46_07185at 1518.792 kb on - strand, within IAI46_07185at 1518.792 kb on - strand, within IAI46_07185at 1518.801 kb on - strand, within IAI46_07185at 1518.801 kb on - strand, within IAI46_07185at 1518.846 kb on + strand, within IAI46_07185at 1518.846 kb on + strand, within IAI46_07185at 1519.081 kb on + strand, within IAI46_07185at 1519.082 kb on - strand, within IAI46_07185at 1519.183 kb on - strandat 1519.201 kb on - strandat 1519.250 kb on + strandat 1519.251 kb on - strandat 1519.253 kb on + strandat 1519.253 kb on + strandat 1519.381 kb on + strandat 1519.384 kb on + strandat 1519.422 kb on - strandat 1519.450 kb on - strandat 1519.452 kb on + strandat 1519.452 kb on + strandat 1519.457 kb on - strandat 1519.474 kb on + strandat 1519.524 kb on - strandat 1519.547 kb on - strandat 1519.563 kb on + strandat 1519.659 kb on - strandat 1519.675 kb on + strandat 1519.701 kb on - strandat 1519.858 kb on + strandat 1519.979 kb on + strand, within IAI46_07190at 1520.021 kb on + strand, within IAI46_07190at 1520.030 kb on + strand, within IAI46_07190at 1520.100 kb on + strand, within IAI46_07190at 1520.136 kb on - strand, within IAI46_07190at 1520.136 kb on - strand, within IAI46_07190at 1520.136 kb on - strand, within IAI46_07190at 1520.230 kb on - strand, within IAI46_07190at 1520.290 kb on - strand, within IAI46_07190at 1520.398 kb on + strand, within IAI46_07190at 1520.398 kb on + strand, within IAI46_07190at 1520.399 kb on - strand, within IAI46_07190at 1520.634 kb on + strand, within IAI46_07190at 1520.635 kb on - strand, within IAI46_07190at 1520.635 kb on - strand, within IAI46_07190at 1520.696 kb on - strand, within IAI46_07190at 1520.746 kb on + strand, within IAI46_07190at 1520.746 kb on + strand, within IAI46_07190at 1520.747 kb on - strand, within IAI46_07190at 1520.747 kb on - strand, within IAI46_07190at 1520.779 kb on - strand, within IAI46_07190at 1520.811 kb on - strand, within IAI46_07190at 1520.812 kb on + strand, within IAI46_07190at 1520.812 kb on + strand, within IAI46_07190at 1520.812 kb on + strand, within IAI46_07190at 1520.813 kb on - strand, within IAI46_07190at 1520.877 kb on + strand, within IAI46_07190at 1520.878 kb on - strand, within IAI46_07190at 1520.878 kb on - strand, within IAI46_07190at 1520.943 kb on - strand, within IAI46_07190at 1520.943 kb on - strand, within IAI46_07190at 1521.071 kb on + strandat 1521.194 kb on + strandat 1521.321 kb on + strand, within IAI46_07195at 1521.324 kb on - strand, within IAI46_07195at 1521.324 kb on - strand, within IAI46_07195at 1521.324 kb on - strand, within IAI46_07195at 1521.324 kb on - strand, within IAI46_07195at 1521.324 kb on - strand, within IAI46_07195at 1521.361 kb on - strand, within IAI46_07195at 1521.457 kb on + strand, within IAI46_07195at 1521.458 kb on - strand, within IAI46_07195at 1521.544 kb on + strand, within IAI46_07195at 1521.544 kb on + strand, within IAI46_07195at 1521.602 kb on + strand, within IAI46_07195at 1521.794 kb on + strand, within IAI46_07195at 1521.794 kb on + strand, within IAI46_07195at 1521.864 kb on + strand, within IAI46_07195at 1521.865 kb on - strand, within IAI46_07195at 1522.034 kb on + strand, within IAI46_07195at 1522.111 kb on - strandat 1522.112 kb on + strandat 1522.112 kb on + strandat 1522.112 kb on + strandat 1522.113 kb on - strandat 1522.113 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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1,518,746 - IAI46_07185 0.69 -0.4
1,518,746 - IAI46_07185 0.69 -1.4
1,518,746 - IAI46_07185 0.69 +0.3
1,518,792 - IAI46_07185 0.72 +0.0
1,518,792 - IAI46_07185 0.72 -0.3
1,518,792 - IAI46_07185 0.72 -0.1
1,518,801 - IAI46_07185 0.73 +0.1
1,518,801 - IAI46_07185 0.73 +0.2
1,518,846 + IAI46_07185 0.75 +0.7
1,518,846 + IAI46_07185 0.75 +0.4
1,519,081 + IAI46_07185 0.90 +0.6
1,519,082 - IAI46_07185 0.90 +0.6
1,519,183 - +0.3
1,519,201 - +0.4
1,519,250 + +0.3
1,519,251 - +0.4
1,519,253 + +0.9
1,519,253 + +0.1
1,519,381 + -0.5
1,519,384 + +1.1
1,519,422 - +0.6
1,519,450 - -1.0
1,519,452 + +0.7
1,519,452 + +0.3
1,519,457 - +1.1
1,519,474 + +0.2
1,519,524 - +0.1
1,519,547 - -0.3
1,519,563 + +1.2
1,519,659 - +0.4
1,519,675 + +0.9
1,519,701 - +0.7
1,519,858 + +0.8
1,519,979 + IAI46_07190 0.18 +0.2
1,520,021 + IAI46_07190 0.21 -0.0
1,520,030 + IAI46_07190 0.21 +0.7
1,520,100 + IAI46_07190 0.26 +0.2
1,520,136 - IAI46_07190 0.29 +0.2
1,520,136 - IAI46_07190 0.29 -0.0
1,520,136 - IAI46_07190 0.29 +1.1
1,520,230 - IAI46_07190 0.36 -0.7
1,520,290 - IAI46_07190 0.40 +1.0
1,520,398 + IAI46_07190 0.48 +0.3
1,520,398 + IAI46_07190 0.48 +0.7
1,520,399 - IAI46_07190 0.48 -0.0
1,520,634 + IAI46_07190 0.65 +1.1
1,520,635 - IAI46_07190 0.65 +1.6
1,520,635 - IAI46_07190 0.65 +0.4
1,520,696 - IAI46_07190 0.69 +0.5
1,520,746 + IAI46_07190 0.73 +0.4
1,520,746 + IAI46_07190 0.73 +0.6
1,520,747 - IAI46_07190 0.73 -0.3
1,520,747 - IAI46_07190 0.73 -0.6
1,520,779 - IAI46_07190 0.75 +0.4
1,520,811 - IAI46_07190 0.77 +0.7
1,520,812 + IAI46_07190 0.77 -0.6
1,520,812 + IAI46_07190 0.77 +0.2
1,520,812 + IAI46_07190 0.77 -0.1
1,520,813 - IAI46_07190 0.77 +0.2
1,520,877 + IAI46_07190 0.82 -0.3
1,520,878 - IAI46_07190 0.82 +1.7
1,520,878 - IAI46_07190 0.82 +0.9
1,520,943 - IAI46_07190 0.87 -0.2
1,520,943 - IAI46_07190 0.87 -0.2
1,521,071 + +0.1
1,521,194 + +0.6
1,521,321 + IAI46_07195 0.18 -0.0
1,521,324 - IAI46_07195 0.19 +0.4
1,521,324 - IAI46_07195 0.19 -0.4
1,521,324 - IAI46_07195 0.19 +0.1
1,521,324 - IAI46_07195 0.19 +0.6
1,521,324 - IAI46_07195 0.19 -1.6
1,521,361 - IAI46_07195 0.22 +0.3
1,521,457 + IAI46_07195 0.31 +0.1
1,521,458 - IAI46_07195 0.31 +0.3
1,521,544 + IAI46_07195 0.39 +0.6
1,521,544 + IAI46_07195 0.39 +0.2
1,521,602 + IAI46_07195 0.44 -0.8
1,521,794 + IAI46_07195 0.62 +0.3
1,521,794 + IAI46_07195 0.62 -0.1
1,521,864 + IAI46_07195 0.68 +0.7
1,521,865 - IAI46_07195 0.68 -1.0
1,522,034 + IAI46_07195 0.84 -0.3
1,522,111 - +1.0
1,522,112 + -0.3
1,522,112 + +0.9
1,522,112 + -0.2
1,522,113 - +0.3
1,522,113 - +1.0

Or see this region's nucleotide sequence