Strain Fitness in Serratia liquefaciens MT49 around IAI46_06975

Experiment: No stress control, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_06965 and IAI46_06970 overlap by 8 nucleotidesIAI46_06970 and IAI46_06975 are separated by 31 nucleotidesIAI46_06975 and IAI46_06980 overlap by 4 nucleotidesIAI46_06980 and IAI46_06985 are separated by 277 nucleotides IAI46_06965: IAI46_06965 - ABC transporter ATP-binding protein, at 1,477,126 to 1,477,905 _06965 IAI46_06970: IAI46_06970 - substrate-binding domain-containing protein, at 1,477,898 to 1,478,629 _06970 IAI46_06975: IAI46_06975 - hypothetical protein, at 1,478,661 to 1,478,957 _06975 IAI46_06980: IAI46_06980 - AAA family ATPase, at 1,478,954 to 1,479,589 _06980 IAI46_06985: IAI46_06985 - HNH nuclease family protein, at 1,479,867 to 1,480,208 _06985 Position (kb) 1478 1479Strain fitness (log2 ratio) -2 -1 0 1at 1477.871 kb on + strandat 1477.989 kb on + strand, within IAI46_06970at 1477.990 kb on - strand, within IAI46_06970at 1477.998 kb on + strand, within IAI46_06970at 1477.998 kb on + strand, within IAI46_06970at 1478.155 kb on - strand, within IAI46_06970at 1478.155 kb on - strand, within IAI46_06970at 1478.155 kb on - strand, within IAI46_06970at 1478.158 kb on + strand, within IAI46_06970at 1478.158 kb on + strand, within IAI46_06970at 1478.158 kb on + strand, within IAI46_06970at 1478.158 kb on + strand, within IAI46_06970at 1478.158 kb on + strand, within IAI46_06970at 1478.158 kb on + strand, within IAI46_06970at 1478.159 kb on - strand, within IAI46_06970at 1478.159 kb on - strand, within IAI46_06970at 1478.162 kb on - strand, within IAI46_06970at 1478.162 kb on - strand, within IAI46_06970at 1478.196 kb on + strand, within IAI46_06970at 1478.197 kb on - strand, within IAI46_06970at 1478.259 kb on - strand, within IAI46_06970at 1478.390 kb on + strand, within IAI46_06970at 1478.390 kb on + strand, within IAI46_06970at 1478.391 kb on - strand, within IAI46_06970at 1478.438 kb on + strand, within IAI46_06970at 1478.438 kb on + strand, within IAI46_06970at 1478.438 kb on + strand, within IAI46_06970at 1478.438 kb on + strand, within IAI46_06970at 1478.439 kb on - strand, within IAI46_06970at 1478.439 kb on - strand, within IAI46_06970at 1478.484 kb on + strand, within IAI46_06970at 1478.513 kb on + strand, within IAI46_06970at 1478.514 kb on - strand, within IAI46_06970at 1478.529 kb on + strand, within IAI46_06970at 1478.529 kb on + strand, within IAI46_06970at 1478.530 kb on - strand, within IAI46_06970at 1478.608 kb on - strandat 1478.627 kb on + strandat 1478.627 kb on + strandat 1478.635 kb on + strandat 1478.636 kb on - strandat 1478.636 kb on - strandat 1478.638 kb on + strandat 1478.638 kb on + strandat 1478.638 kb on + strandat 1478.638 kb on + strandat 1478.639 kb on - strandat 1478.652 kb on - strandat 1478.659 kb on + strandat 1478.660 kb on - strandat 1478.660 kb on - strandat 1478.663 kb on - strandat 1478.839 kb on + strand, within IAI46_06975at 1478.840 kb on - strand, within IAI46_06975at 1478.840 kb on - strand, within IAI46_06975at 1478.913 kb on - strand, within IAI46_06975at 1479.052 kb on - strand, within IAI46_06980at 1479.107 kb on + strand, within IAI46_06980at 1479.136 kb on + strand, within IAI46_06980at 1479.137 kb on - strand, within IAI46_06980at 1479.174 kb on + strand, within IAI46_06980at 1479.175 kb on - strand, within IAI46_06980at 1479.175 kb on - strand, within IAI46_06980at 1479.175 kb on - strand, within IAI46_06980at 1479.194 kb on - strand, within IAI46_06980at 1479.194 kb on - strand, within IAI46_06980at 1479.195 kb on + strand, within IAI46_06980at 1479.196 kb on - strand, within IAI46_06980at 1479.345 kb on + strand, within IAI46_06980at 1479.352 kb on - strand, within IAI46_06980at 1479.413 kb on - strand, within IAI46_06980at 1479.413 kb on - strand, within IAI46_06980at 1479.446 kb on - strand, within IAI46_06980at 1479.446 kb on - strand, within IAI46_06980at 1479.446 kb on - strand, within IAI46_06980at 1479.448 kb on - strand, within IAI46_06980at 1479.520 kb on - strand, within IAI46_06980at 1479.664 kb on + strandat 1479.669 kb on - strandat 1479.687 kb on + strandat 1479.688 kb on - strandat 1479.688 kb on - strandat 1479.688 kb on - strandat 1479.728 kb on - strandat 1479.734 kb on - strandat 1479.734 kb on - strandat 1479.741 kb on - strandat 1479.771 kb on + strandat 1479.771 kb on + strandat 1479.772 kb on - strandat 1479.826 kb on + strandat 1479.868 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
remove
1,477,871 + -0.3
1,477,989 + IAI46_06970 0.12 -1.5
1,477,990 - IAI46_06970 0.13 -0.3
1,477,998 + IAI46_06970 0.14 +0.7
1,477,998 + IAI46_06970 0.14 +0.6
1,478,155 - IAI46_06970 0.35 +1.0
1,478,155 - IAI46_06970 0.35 +0.3
1,478,155 - IAI46_06970 0.35 +0.4
1,478,158 + IAI46_06970 0.36 +0.2
1,478,158 + IAI46_06970 0.36 +0.5
1,478,158 + IAI46_06970 0.36 -0.2
1,478,158 + IAI46_06970 0.36 -0.3
1,478,158 + IAI46_06970 0.36 +0.0
1,478,158 + IAI46_06970 0.36 -0.1
1,478,159 - IAI46_06970 0.36 -0.3
1,478,159 - IAI46_06970 0.36 -1.3
1,478,162 - IAI46_06970 0.36 +0.3
1,478,162 - IAI46_06970 0.36 +0.1
1,478,196 + IAI46_06970 0.41 +0.8
1,478,197 - IAI46_06970 0.41 +0.6
1,478,259 - IAI46_06970 0.49 +0.6
1,478,390 + IAI46_06970 0.67 -0.1
1,478,390 + IAI46_06970 0.67 +0.2
1,478,391 - IAI46_06970 0.67 +0.8
1,478,438 + IAI46_06970 0.74 -0.1
1,478,438 + IAI46_06970 0.74 +0.8
1,478,438 + IAI46_06970 0.74 -0.0
1,478,438 + IAI46_06970 0.74 +0.5
1,478,439 - IAI46_06970 0.74 +0.1
1,478,439 - IAI46_06970 0.74 +0.5
1,478,484 + IAI46_06970 0.80 -0.7
1,478,513 + IAI46_06970 0.84 -0.6
1,478,514 - IAI46_06970 0.84 +1.2
1,478,529 + IAI46_06970 0.86 +0.4
1,478,529 + IAI46_06970 0.86 +0.4
1,478,530 - IAI46_06970 0.86 -0.5
1,478,608 - +0.5
1,478,627 + +0.3
1,478,627 + +0.8
1,478,635 + +1.5
1,478,636 - -0.0
1,478,636 - -0.3
1,478,638 + +1.3
1,478,638 + +0.7
1,478,638 + +0.1
1,478,638 + -0.3
1,478,639 - +0.3
1,478,652 - +0.4
1,478,659 + -0.9
1,478,660 - +0.4
1,478,660 - +0.4
1,478,663 - -0.4
1,478,839 + IAI46_06975 0.60 +0.9
1,478,840 - IAI46_06975 0.60 +0.7
1,478,840 - IAI46_06975 0.60 -0.8
1,478,913 - IAI46_06975 0.85 +0.7
1,479,052 - IAI46_06980 0.15 +0.3
1,479,107 + IAI46_06980 0.24 +0.5
1,479,136 + IAI46_06980 0.29 +0.7
1,479,137 - IAI46_06980 0.29 +0.2
1,479,174 + IAI46_06980 0.35 +0.8
1,479,175 - IAI46_06980 0.35 +0.5
1,479,175 - IAI46_06980 0.35 -0.9
1,479,175 - IAI46_06980 0.35 -0.3
1,479,194 - IAI46_06980 0.38 -0.1
1,479,194 - IAI46_06980 0.38 +1.3
1,479,195 + IAI46_06980 0.38 +0.7
1,479,196 - IAI46_06980 0.38 +0.3
1,479,345 + IAI46_06980 0.61 +0.2
1,479,352 - IAI46_06980 0.63 +0.6
1,479,413 - IAI46_06980 0.72 -0.9
1,479,413 - IAI46_06980 0.72 -0.0
1,479,446 - IAI46_06980 0.77 +0.2
1,479,446 - IAI46_06980 0.77 +0.9
1,479,446 - IAI46_06980 0.77 +0.2
1,479,448 - IAI46_06980 0.78 +1.5
1,479,520 - IAI46_06980 0.89 +0.4
1,479,664 + -0.2
1,479,669 - +0.1
1,479,687 + +1.1
1,479,688 - +0.3
1,479,688 - +0.5
1,479,688 - +0.2
1,479,728 - -0.3
1,479,734 - +0.2
1,479,734 - -0.1
1,479,741 - -0.9
1,479,771 + +1.0
1,479,771 + -1.1
1,479,772 - -0.3
1,479,826 + -0.1
1,479,868 + -2.0

Or see this region's nucleotide sequence