Strain Fitness in Serratia liquefaciens MT49 around IAI46_04485

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04480 and IAI46_04485 are separated by 46 nucleotidesIAI46_04485 and IAI46_04490 are separated by 306 nucleotides IAI46_04480: IAI46_04480 - condensation protein, at 963,524 to 966,460 _04480 IAI46_04485: IAI46_04485 - hypothetical protein, at 966,507 to 967,739 _04485 IAI46_04490: IAI46_04490 - DsbA family protein, at 968,046 to 968,687 _04490 Position (kb) 966 967 968Strain fitness (log2 ratio) -2 -1 0 1 2at 965.616 kb on - strand, within IAI46_04480at 965.670 kb on - strand, within IAI46_04480at 965.670 kb on - strand, within IAI46_04480at 965.816 kb on + strand, within IAI46_04480at 965.817 kb on - strand, within IAI46_04480at 965.970 kb on - strand, within IAI46_04480at 966.065 kb on - strand, within IAI46_04480at 966.071 kb on + strand, within IAI46_04480at 966.071 kb on + strand, within IAI46_04480at 966.072 kb on - strand, within IAI46_04480at 966.072 kb on - strand, within IAI46_04480at 966.072 kb on - strand, within IAI46_04480at 966.079 kb on + strand, within IAI46_04480at 966.172 kb on + strandat 966.194 kb on - strandat 966.194 kb on - strandat 966.222 kb on - strandat 966.326 kb on + strandat 966.326 kb on + strandat 966.327 kb on - strandat 966.327 kb on - strandat 966.327 kb on - strandat 966.342 kb on - strandat 966.342 kb on - strandat 966.376 kb on + strandat 966.458 kb on + strandat 966.484 kb on - strandat 966.484 kb on - strandat 966.484 kb on - strandat 966.520 kb on + strandat 966.538 kb on + strandat 966.797 kb on - strand, within IAI46_04485at 966.825 kb on + strand, within IAI46_04485at 966.825 kb on + strand, within IAI46_04485at 966.930 kb on + strand, within IAI46_04485at 966.930 kb on + strand, within IAI46_04485at 966.930 kb on + strand, within IAI46_04485at 966.931 kb on - strand, within IAI46_04485at 966.983 kb on + strand, within IAI46_04485at 966.984 kb on - strand, within IAI46_04485at 966.984 kb on - strand, within IAI46_04485at 967.035 kb on + strand, within IAI46_04485at 967.035 kb on + strand, within IAI46_04485at 967.036 kb on - strand, within IAI46_04485at 967.036 kb on - strand, within IAI46_04485at 967.036 kb on - strand, within IAI46_04485at 967.036 kb on - strand, within IAI46_04485at 967.036 kb on - strand, within IAI46_04485at 967.088 kb on + strand, within IAI46_04485at 967.088 kb on + strand, within IAI46_04485at 967.088 kb on + strand, within IAI46_04485at 967.088 kb on + strand, within IAI46_04485at 967.089 kb on - strand, within IAI46_04485at 967.089 kb on - strand, within IAI46_04485at 967.195 kb on + strand, within IAI46_04485at 967.195 kb on + strand, within IAI46_04485at 967.196 kb on - strand, within IAI46_04485at 967.205 kb on + strand, within IAI46_04485at 967.205 kb on + strand, within IAI46_04485at 967.205 kb on + strand, within IAI46_04485at 967.206 kb on - strand, within IAI46_04485at 967.206 kb on - strand, within IAI46_04485at 967.299 kb on + strand, within IAI46_04485at 967.300 kb on - strand, within IAI46_04485at 967.300 kb on - strand, within IAI46_04485at 967.313 kb on + strand, within IAI46_04485at 967.314 kb on - strand, within IAI46_04485at 967.365 kb on - strand, within IAI46_04485at 967.383 kb on + strand, within IAI46_04485at 967.384 kb on - strand, within IAI46_04485at 967.384 kb on - strand, within IAI46_04485at 967.384 kb on - strand, within IAI46_04485at 967.509 kb on + strand, within IAI46_04485at 967.510 kb on - strand, within IAI46_04485at 967.510 kb on - strand, within IAI46_04485at 967.510 kb on - strand, within IAI46_04485at 967.601 kb on - strand, within IAI46_04485at 967.777 kb on + strandat 967.777 kb on + strandat 967.788 kb on + strandat 967.815 kb on + strandat 967.815 kb on + strandat 967.816 kb on - strandat 967.831 kb on + strandat 967.834 kb on + strandat 967.835 kb on - strandat 967.850 kb on + strandat 967.850 kb on + strandat 967.850 kb on + strandat 967.851 kb on - strandat 967.851 kb on - strandat 967.884 kb on - strandat 967.884 kb on - strandat 967.884 kb on - strandat 967.884 kb on - strandat 967.954 kb on - strandat 967.964 kb on + strandat 967.965 kb on - strandat 967.988 kb on + strandat 967.999 kb on + strandat 968.000 kb on - strandat 968.000 kb on - strandat 968.042 kb on - strandat 968.042 kb on - strandat 968.045 kb on + strandat 968.045 kb on + strandat 968.046 kb on - strandat 968.046 kb on - strandat 968.046 kb on - strandat 968.046 kb on - strandat 968.061 kb on - strandat 968.124 kb on + strand, within IAI46_04490at 968.142 kb on + strand, within IAI46_04490at 968.142 kb on + strand, within IAI46_04490at 968.235 kb on + strand, within IAI46_04490at 968.292 kb on + strand, within IAI46_04490at 968.292 kb on + strand, within IAI46_04490at 968.292 kb on + strand, within IAI46_04490at 968.293 kb on - strand, within IAI46_04490at 968.293 kb on - strand, within IAI46_04490at 968.293 kb on - strand, within IAI46_04490at 968.465 kb on - strand, within IAI46_04490at 968.555 kb on - strand, within IAI46_04490at 968.574 kb on + strand, within IAI46_04490at 968.575 kb on - strand, within IAI46_04490at 968.575 kb on - strand, within IAI46_04490at 968.575 kb on - strand, within IAI46_04490at 968.590 kb on - strand, within IAI46_04490at 968.635 kb on - strandat 968.664 kb on + strandat 968.686 kb on - strandat 968.686 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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965,616 - IAI46_04480 0.71 +0.2
965,670 - IAI46_04480 0.73 +0.5
965,670 - IAI46_04480 0.73 -0.1
965,816 + IAI46_04480 0.78 +1.2
965,817 - IAI46_04480 0.78 -0.7
965,970 - IAI46_04480 0.83 -0.1
966,065 - IAI46_04480 0.87 +0.4
966,071 + IAI46_04480 0.87 -0.2
966,071 + IAI46_04480 0.87 +0.8
966,072 - IAI46_04480 0.87 +0.1
966,072 - IAI46_04480 0.87 +0.9
966,072 - IAI46_04480 0.87 +0.1
966,079 + IAI46_04480 0.87 +0.1
966,172 + -0.6
966,194 - +0.6
966,194 - -0.5
966,222 - -2.1
966,326 + -0.7
966,326 + -0.0
966,327 - -0.6
966,327 - +0.5
966,327 - +1.8
966,342 - +0.9
966,342 - -0.0
966,376 + -1.0
966,458 + +1.6
966,484 - +0.3
966,484 - -0.2
966,484 - +0.5
966,520 + -0.1
966,538 + -0.1
966,797 - IAI46_04485 0.24 +0.1
966,825 + IAI46_04485 0.26 +0.0
966,825 + IAI46_04485 0.26 +0.6
966,930 + IAI46_04485 0.34 -1.0
966,930 + IAI46_04485 0.34 +0.0
966,930 + IAI46_04485 0.34 +0.4
966,931 - IAI46_04485 0.34 +0.1
966,983 + IAI46_04485 0.39 +0.0
966,984 - IAI46_04485 0.39 -0.4
966,984 - IAI46_04485 0.39 -0.5
967,035 + IAI46_04485 0.43 +0.7
967,035 + IAI46_04485 0.43 +1.1
967,036 - IAI46_04485 0.43 +1.1
967,036 - IAI46_04485 0.43 -0.2
967,036 - IAI46_04485 0.43 +0.6
967,036 - IAI46_04485 0.43 -1.2
967,036 - IAI46_04485 0.43 +1.1
967,088 + IAI46_04485 0.47 -0.9
967,088 + IAI46_04485 0.47 +0.3
967,088 + IAI46_04485 0.47 +0.4
967,088 + IAI46_04485 0.47 -0.4
967,089 - IAI46_04485 0.47 +0.1
967,089 - IAI46_04485 0.47 +0.6
967,195 + IAI46_04485 0.56 -0.3
967,195 + IAI46_04485 0.56 +0.3
967,196 - IAI46_04485 0.56 -0.1
967,205 + IAI46_04485 0.57 -0.4
967,205 + IAI46_04485 0.57 +0.8
967,205 + IAI46_04485 0.57 +0.7
967,206 - IAI46_04485 0.57 +0.3
967,206 - IAI46_04485 0.57 +0.4
967,299 + IAI46_04485 0.64 +0.6
967,300 - IAI46_04485 0.64 -0.0
967,300 - IAI46_04485 0.64 +0.7
967,313 + IAI46_04485 0.65 +0.5
967,314 - IAI46_04485 0.65 -1.5
967,365 - IAI46_04485 0.70 -0.4
967,383 + IAI46_04485 0.71 +0.8
967,384 - IAI46_04485 0.71 +0.0
967,384 - IAI46_04485 0.71 -0.6
967,384 - IAI46_04485 0.71 +1.4
967,509 + IAI46_04485 0.81 -0.2
967,510 - IAI46_04485 0.81 +0.1
967,510 - IAI46_04485 0.81 -1.4
967,510 - IAI46_04485 0.81 +0.5
967,601 - IAI46_04485 0.89 +1.2
967,777 + +0.3
967,777 + -0.6
967,788 + -0.5
967,815 + +1.0
967,815 + -1.4
967,816 - -0.4
967,831 + +0.8
967,834 + -0.1
967,835 - +0.6
967,850 + -0.5
967,850 + +0.5
967,850 + -1.0
967,851 - +0.4
967,851 - -0.6
967,884 - +0.4
967,884 - +0.8
967,884 - -0.1
967,884 - +0.2
967,954 - +0.9
967,964 + +0.7
967,965 - -1.7
967,988 + -0.2
967,999 + +0.3
968,000 - -0.2
968,000 - +0.5
968,042 - +0.8
968,042 - +0.4
968,045 + +0.3
968,045 + +0.1
968,046 - +1.1
968,046 - +0.8
968,046 - -0.0
968,046 - +0.1
968,061 - -0.2
968,124 + IAI46_04490 0.12 -0.1
968,142 + IAI46_04490 0.15 +0.4
968,142 + IAI46_04490 0.15 +0.1
968,235 + IAI46_04490 0.29 -0.5
968,292 + IAI46_04490 0.38 +0.3
968,292 + IAI46_04490 0.38 -0.7
968,292 + IAI46_04490 0.38 -0.2
968,293 - IAI46_04490 0.38 +0.0
968,293 - IAI46_04490 0.38 -0.6
968,293 - IAI46_04490 0.38 -0.9
968,465 - IAI46_04490 0.65 +0.4
968,555 - IAI46_04490 0.79 -0.5
968,574 + IAI46_04490 0.82 +0.3
968,575 - IAI46_04490 0.82 +1.1
968,575 - IAI46_04490 0.82 +0.2
968,575 - IAI46_04490 0.82 +0.4
968,590 - IAI46_04490 0.85 +0.7
968,635 - +0.6
968,664 + +0.3
968,686 - -0.1
968,686 - -0.7

Or see this region's nucleotide sequence