Strain Fitness in Serratia liquefaciens MT49 around IAI46_04340

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04335 and IAI46_04340 are separated by 245 nucleotidesIAI46_04340 and IAI46_04345 are separated by 97 nucleotidesIAI46_04345 and IAI46_04350 overlap by 69 nucleotides IAI46_04335: IAI46_04335 - acyl-CoA dehydrogenase, at 928,709 to 931,165 _04335 IAI46_04340: IAI46_04340 - D-sedoheptulose 7-phosphate isomerase, at 931,411 to 931,992 _04340 IAI46_04345: IAI46_04345 - class II glutamine amidotransferase, at 932,090 to 932,896 _04345 IAI46_04350: IAI46_04350 - murein L,D-transpeptidase, at 932,828 to 933,598 _04350 Position (kb) 931 932Strain fitness (log2 ratio) -2 -1 0 1at 930.624 kb on + strand, within IAI46_04335at 930.624 kb on + strand, within IAI46_04335at 930.625 kb on - strand, within IAI46_04335at 930.648 kb on + strand, within IAI46_04335at 930.826 kb on + strand, within IAI46_04335at 930.826 kb on + strand, within IAI46_04335at 930.826 kb on + strand, within IAI46_04335at 930.827 kb on - strand, within IAI46_04335at 930.827 kb on - strand, within IAI46_04335at 930.827 kb on - strand, within IAI46_04335at 930.919 kb on + strand, within IAI46_04335at 930.920 kb on - strandat 931.068 kb on + strandat 931.068 kb on + strandat 931.068 kb on + strandat 931.069 kb on - strandat 931.087 kb on + strandat 931.088 kb on - strandat 931.113 kb on + strandat 931.114 kb on - strandat 931.150 kb on + strandat 931.150 kb on + strandat 931.150 kb on + strandat 931.150 kb on + strandat 931.151 kb on - strandat 931.151 kb on - strandat 931.153 kb on + strandat 931.154 kb on - strandat 931.154 kb on - strandat 931.165 kb on + strandat 931.165 kb on + strandat 931.165 kb on + strandat 931.165 kb on + strandat 931.165 kb on + strandat 931.166 kb on - strandat 931.166 kb on - strandat 931.206 kb on + strandat 931.206 kb on + strandat 931.206 kb on + strandat 931.207 kb on - strandat 931.207 kb on - strandat 931.207 kb on - strandat 931.207 kb on - strandat 931.211 kb on - strandat 931.211 kb on - strandat 931.213 kb on + strandat 931.214 kb on - strandat 931.262 kb on + strandat 931.269 kb on + strandat 932.023 kb on + strandat 932.024 kb on - strandat 932.024 kb on - strandat 932.024 kb on - strandat 932.122 kb on - strandat 932.132 kb on - strandat 932.185 kb on + strand, within IAI46_04345at 932.185 kb on + strand, within IAI46_04345at 932.186 kb on - strand, within IAI46_04345at 932.203 kb on + strand, within IAI46_04345at 932.210 kb on + strand, within IAI46_04345at 932.210 kb on + strand, within IAI46_04345at 932.210 kb on + strand, within IAI46_04345at 932.210 kb on + strand, within IAI46_04345at 932.210 kb on + strand, within IAI46_04345at 932.210 kb on + strand, within IAI46_04345at 932.211 kb on - strand, within IAI46_04345at 932.236 kb on + strand, within IAI46_04345at 932.236 kb on + strand, within IAI46_04345at 932.360 kb on - strand, within IAI46_04345at 932.392 kb on + strand, within IAI46_04345at 932.392 kb on + strand, within IAI46_04345at 932.402 kb on + strand, within IAI46_04345at 932.402 kb on + strand, within IAI46_04345at 932.483 kb on + strand, within IAI46_04345at 932.523 kb on - strand, within IAI46_04345at 932.530 kb on + strand, within IAI46_04345at 932.562 kb on - strand, within IAI46_04345at 932.564 kb on - strand, within IAI46_04345at 932.642 kb on + strand, within IAI46_04345at 932.643 kb on - strand, within IAI46_04345at 932.643 kb on - strand, within IAI46_04345at 932.660 kb on + strand, within IAI46_04345at 932.696 kb on - strand, within IAI46_04345at 932.746 kb on + strand, within IAI46_04345at 932.746 kb on + strand, within IAI46_04345at 932.746 kb on + strand, within IAI46_04345at 932.746 kb on + strand, within IAI46_04345at 932.747 kb on - strand, within IAI46_04345at 932.747 kb on - strand, within IAI46_04345at 932.829 kb on + strandat 932.901 kb on + strandat 932.901 kb on + strandat 932.902 kb on - strandat 932.946 kb on + strand, within IAI46_04350at 932.947 kb on - strand, within IAI46_04350at 932.947 kb on - strand, within IAI46_04350at 932.947 kb on - strand, within IAI46_04350at 932.947 kb on - strand, within IAI46_04350

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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930,624 + IAI46_04335 0.78 +0.5
930,624 + IAI46_04335 0.78 +0.3
930,625 - IAI46_04335 0.78 +1.7
930,648 + IAI46_04335 0.79 -0.0
930,826 + IAI46_04335 0.86 +0.6
930,826 + IAI46_04335 0.86 -0.1
930,826 + IAI46_04335 0.86 +0.1
930,827 - IAI46_04335 0.86 -0.1
930,827 - IAI46_04335 0.86 +0.1
930,827 - IAI46_04335 0.86 +0.7
930,919 + IAI46_04335 0.90 +0.8
930,920 - -0.4
931,068 + +0.3
931,068 + +0.5
931,068 + -0.0
931,069 - +0.8
931,087 + +0.4
931,088 - +0.1
931,113 + -0.2
931,114 - -0.1
931,150 + -0.8
931,150 + -0.2
931,150 + +0.8
931,150 + +0.5
931,151 - -0.0
931,151 - +0.6
931,153 + +0.1
931,154 - +0.8
931,154 - +0.1
931,165 + +0.1
931,165 + +0.8
931,165 + +0.4
931,165 + +0.2
931,165 + +0.5
931,166 - +0.2
931,166 - -0.3
931,206 + -0.1
931,206 + +0.1
931,206 + -0.3
931,207 - +1.3
931,207 - -0.1
931,207 - -1.1
931,207 - -0.1
931,211 - +0.4
931,211 - +0.3
931,213 + -0.2
931,214 - -0.2
931,262 + -0.2
931,269 + +0.5
932,023 + +0.6
932,024 - -1.2
932,024 - +0.2
932,024 - +0.1
932,122 - +0.5
932,132 - +0.8
932,185 + IAI46_04345 0.12 -0.1
932,185 + IAI46_04345 0.12 -0.3
932,186 - IAI46_04345 0.12 -0.0
932,203 + IAI46_04345 0.14 +0.5
932,210 + IAI46_04345 0.15 -0.0
932,210 + IAI46_04345 0.15 +0.6
932,210 + IAI46_04345 0.15 +0.2
932,210 + IAI46_04345 0.15 +0.8
932,210 + IAI46_04345 0.15 +0.3
932,210 + IAI46_04345 0.15 +0.4
932,211 - IAI46_04345 0.15 +0.1
932,236 + IAI46_04345 0.18 +1.0
932,236 + IAI46_04345 0.18 +0.3
932,360 - IAI46_04345 0.33 +1.6
932,392 + IAI46_04345 0.37 -0.2
932,392 + IAI46_04345 0.37 +0.3
932,402 + IAI46_04345 0.39 -0.2
932,402 + IAI46_04345 0.39 -1.4
932,483 + IAI46_04345 0.49 +0.6
932,523 - IAI46_04345 0.54 -0.4
932,530 + IAI46_04345 0.55 +0.4
932,562 - IAI46_04345 0.58 -0.0
932,564 - IAI46_04345 0.59 +1.3
932,642 + IAI46_04345 0.68 +0.6
932,643 - IAI46_04345 0.69 -0.8
932,643 - IAI46_04345 0.69 -0.6
932,660 + IAI46_04345 0.71 -1.9
932,696 - IAI46_04345 0.75 +0.5
932,746 + IAI46_04345 0.81 +0.3
932,746 + IAI46_04345 0.81 +0.1
932,746 + IAI46_04345 0.81 +0.5
932,746 + IAI46_04345 0.81 -1.6
932,747 - IAI46_04345 0.81 +0.4
932,747 - IAI46_04345 0.81 +1.3
932,829 + -0.1
932,901 + -0.2
932,901 + +0.0
932,902 - +0.2
932,946 + IAI46_04350 0.15 -0.4
932,947 - IAI46_04350 0.15 -0.8
932,947 - IAI46_04350 0.15 +0.3
932,947 - IAI46_04350 0.15 -0.2
932,947 - IAI46_04350 0.15 -0.5

Or see this region's nucleotide sequence