Strain Fitness in Serratia liquefaciens MT49 around IAI46_04205

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04200 and IAI46_04205 are separated by 137 nucleotidesIAI46_04205 and IAI46_04210 are separated by 5 nucleotidesIAI46_04210 and IAI46_04215 are separated by 9 nucleotides IAI46_04200: IAI46_04200 - IucA/IucC family siderophore biosynthesis protein, at 904,965 to 906,710 _04200 IAI46_04205: IAI46_04205 - MFS transporter, at 906,848 to 908,071 _04205 IAI46_04210: IAI46_04210 - siderophore-interacting protein, at 908,077 to 908,961 _04210 IAI46_04215: IAI46_04215 - type II toxin-antitoxin system RelE/ParE family toxin, at 908,971 to 909,210 _04215 Position (kb) 906 907 908 909Strain fitness (log2 ratio) -2 -1 0 1at 905.867 kb on + strand, within IAI46_04200at 905.894 kb on - strand, within IAI46_04200at 905.894 kb on - strand, within IAI46_04200at 906.511 kb on + strand, within IAI46_04200at 906.511 kb on + strand, within IAI46_04200at 906.511 kb on + strand, within IAI46_04200at 906.512 kb on - strand, within IAI46_04200at 906.544 kb on - strandat 906.557 kb on + strandat 906.558 kb on - strandat 906.581 kb on + strandat 906.582 kb on - strandat 906.582 kb on - strandat 906.596 kb on - strandat 906.817 kb on + strandat 906.853 kb on + strandat 907.101 kb on + strand, within IAI46_04205at 907.101 kb on + strand, within IAI46_04205at 907.102 kb on - strand, within IAI46_04205at 907.141 kb on - strand, within IAI46_04205at 907.222 kb on + strand, within IAI46_04205at 907.222 kb on + strand, within IAI46_04205at 907.222 kb on + strand, within IAI46_04205at 907.222 kb on + strand, within IAI46_04205at 907.223 kb on - strand, within IAI46_04205at 907.223 kb on - strand, within IAI46_04205at 907.300 kb on + strand, within IAI46_04205at 907.300 kb on + strand, within IAI46_04205at 907.301 kb on - strand, within IAI46_04205at 907.434 kb on + strand, within IAI46_04205at 907.435 kb on - strand, within IAI46_04205at 907.441 kb on - strand, within IAI46_04205at 907.456 kb on + strand, within IAI46_04205at 907.456 kb on + strand, within IAI46_04205at 907.456 kb on + strand, within IAI46_04205at 907.510 kb on + strand, within IAI46_04205at 907.510 kb on + strand, within IAI46_04205at 907.510 kb on + strand, within IAI46_04205at 907.511 kb on - strand, within IAI46_04205at 907.520 kb on + strand, within IAI46_04205at 907.520 kb on + strand, within IAI46_04205at 907.520 kb on + strand, within IAI46_04205at 907.520 kb on + strand, within IAI46_04205at 907.520 kb on + strand, within IAI46_04205at 907.521 kb on - strand, within IAI46_04205at 907.521 kb on - strand, within IAI46_04205at 907.597 kb on - strand, within IAI46_04205at 907.597 kb on - strand, within IAI46_04205at 907.664 kb on - strand, within IAI46_04205at 907.664 kb on - strand, within IAI46_04205at 907.747 kb on - strand, within IAI46_04205at 907.785 kb on + strand, within IAI46_04205at 907.786 kb on - strand, within IAI46_04205at 907.786 kb on - strand, within IAI46_04205at 907.790 kb on + strand, within IAI46_04205at 907.791 kb on - strand, within IAI46_04205at 907.791 kb on - strand, within IAI46_04205at 907.791 kb on - strand, within IAI46_04205at 907.841 kb on + strand, within IAI46_04205at 907.898 kb on - strand, within IAI46_04205at 907.898 kb on - strand, within IAI46_04205at 907.906 kb on + strand, within IAI46_04205at 908.069 kb on + strandat 908.076 kb on + strandat 908.076 kb on + strandat 908.076 kb on + strandat 908.076 kb on + strandat 908.077 kb on - strandat 908.077 kb on - strandat 908.284 kb on + strand, within IAI46_04210at 908.284 kb on + strand, within IAI46_04210at 908.286 kb on + strand, within IAI46_04210at 908.287 kb on - strand, within IAI46_04210at 908.287 kb on - strand, within IAI46_04210at 908.326 kb on + strand, within IAI46_04210at 908.327 kb on - strand, within IAI46_04210at 908.327 kb on - strand, within IAI46_04210at 908.328 kb on + strand, within IAI46_04210at 908.439 kb on + strand, within IAI46_04210at 908.451 kb on - strand, within IAI46_04210at 908.677 kb on + strand, within IAI46_04210at 908.719 kb on - strand, within IAI46_04210at 908.750 kb on + strand, within IAI46_04210at 908.755 kb on - strand, within IAI46_04210at 908.755 kb on - strand, within IAI46_04210at 908.755 kb on - strand, within IAI46_04210at 908.755 kb on - strand, within IAI46_04210at 908.851 kb on + strand, within IAI46_04210at 908.851 kb on + strand, within IAI46_04210at 908.851 kb on + strand, within IAI46_04210at 908.851 kb on + strand, within IAI46_04210at 908.851 kb on + strand, within IAI46_04210at 908.899 kb on + strandat 908.950 kb on + strandat 908.951 kb on - strandat 908.951 kb on - strandat 908.951 kb on - strandat 909.035 kb on + strand, within IAI46_04215at 909.045 kb on + strand, within IAI46_04215at 909.045 kb on + strand, within IAI46_04215

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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905,867 + IAI46_04200 0.52 -0.4
905,894 - IAI46_04200 0.53 +0.4
905,894 - IAI46_04200 0.53 +0.9
906,511 + IAI46_04200 0.89 +0.7
906,511 + IAI46_04200 0.89 +0.2
906,511 + IAI46_04200 0.89 +1.7
906,512 - IAI46_04200 0.89 +0.1
906,544 - +1.0
906,557 + -0.2
906,558 - -0.6
906,581 + -2.2
906,582 - +0.4
906,582 - -0.6
906,596 - -1.0
906,817 + -0.0
906,853 + +0.3
907,101 + IAI46_04205 0.21 +0.1
907,101 + IAI46_04205 0.21 -0.3
907,102 - IAI46_04205 0.21 -0.4
907,141 - IAI46_04205 0.24 +0.0
907,222 + IAI46_04205 0.31 +0.9
907,222 + IAI46_04205 0.31 -0.3
907,222 + IAI46_04205 0.31 -1.4
907,222 + IAI46_04205 0.31 +0.5
907,223 - IAI46_04205 0.31 -0.4
907,223 - IAI46_04205 0.31 +1.5
907,300 + IAI46_04205 0.37 -0.5
907,300 + IAI46_04205 0.37 -0.1
907,301 - IAI46_04205 0.37 +0.3
907,434 + IAI46_04205 0.48 -0.3
907,435 - IAI46_04205 0.48 +0.2
907,441 - IAI46_04205 0.48 +0.0
907,456 + IAI46_04205 0.50 -0.1
907,456 + IAI46_04205 0.50 +0.2
907,456 + IAI46_04205 0.50 -0.6
907,510 + IAI46_04205 0.54 +0.3
907,510 + IAI46_04205 0.54 +0.3
907,510 + IAI46_04205 0.54 +0.4
907,511 - IAI46_04205 0.54 +1.0
907,520 + IAI46_04205 0.55 +0.5
907,520 + IAI46_04205 0.55 +0.4
907,520 + IAI46_04205 0.55 +0.4
907,520 + IAI46_04205 0.55 +0.4
907,520 + IAI46_04205 0.55 +0.6
907,521 - IAI46_04205 0.55 -0.1
907,521 - IAI46_04205 0.55 +0.1
907,597 - IAI46_04205 0.61 +0.4
907,597 - IAI46_04205 0.61 -0.0
907,664 - IAI46_04205 0.67 +0.1
907,664 - IAI46_04205 0.67 -0.2
907,747 - IAI46_04205 0.73 -0.0
907,785 + IAI46_04205 0.77 +0.1
907,786 - IAI46_04205 0.77 +0.7
907,786 - IAI46_04205 0.77 -0.0
907,790 + IAI46_04205 0.77 +0.1
907,791 - IAI46_04205 0.77 +1.0
907,791 - IAI46_04205 0.77 +0.7
907,791 - IAI46_04205 0.77 -0.1
907,841 + IAI46_04205 0.81 -0.4
907,898 - IAI46_04205 0.86 +0.6
907,898 - IAI46_04205 0.86 +0.4
907,906 + IAI46_04205 0.86 +0.2
908,069 + -1.0
908,076 + +0.5
908,076 + +0.2
908,076 + -0.0
908,076 + +0.8
908,077 - -0.5
908,077 - +0.4
908,284 + IAI46_04210 0.23 -0.5
908,284 + IAI46_04210 0.23 +0.6
908,286 + IAI46_04210 0.24 -0.1
908,287 - IAI46_04210 0.24 +0.0
908,287 - IAI46_04210 0.24 +0.3
908,326 + IAI46_04210 0.28 -0.8
908,327 - IAI46_04210 0.28 -0.6
908,327 - IAI46_04210 0.28 +0.0
908,328 + IAI46_04210 0.28 +0.4
908,439 + IAI46_04210 0.41 +1.0
908,451 - IAI46_04210 0.42 +0.3
908,677 + IAI46_04210 0.68 +0.3
908,719 - IAI46_04210 0.73 +0.5
908,750 + IAI46_04210 0.76 +1.0
908,755 - IAI46_04210 0.77 -0.6
908,755 - IAI46_04210 0.77 -0.2
908,755 - IAI46_04210 0.77 +1.5
908,755 - IAI46_04210 0.77 +1.0
908,851 + IAI46_04210 0.87 +0.1
908,851 + IAI46_04210 0.87 +0.1
908,851 + IAI46_04210 0.87 -0.1
908,851 + IAI46_04210 0.87 -0.6
908,851 + IAI46_04210 0.87 +0.6
908,899 + +0.3
908,950 + +0.5
908,951 - +0.1
908,951 - +0.1
908,951 - -0.7
909,035 + IAI46_04215 0.27 +0.3
909,045 + IAI46_04215 0.31 +0.6
909,045 + IAI46_04215 0.31 +0.1

Or see this region's nucleotide sequence