Strain Fitness in Serratia liquefaciens MT49 around IAI46_04040

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04030 and IAI46_04035 overlap by 1 nucleotidesIAI46_04035 and IAI46_04040 are separated by 4 nucleotidesIAI46_04040 and IAI46_04045 are separated by 9 nucleotidesIAI46_04045 and IAI46_04050 are separated by 38 nucleotidesIAI46_04050 and IAI46_04055 are separated by 8 nucleotides IAI46_04030: IAI46_04030 - beta-ketoacyl synthase chain length factor, at 872,207 to 872,929 _04030 IAI46_04035: IAI46_04035 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 872,929 to 873,747 _04035 IAI46_04040: IAI46_04040 - acyl carrier protein, at 873,752 to 874,012 _04040 IAI46_04045: IAI46_04045 - acyl carrier protein, at 874,022 to 874,273 _04045 IAI46_04050: IAI46_04050 - hypothetical protein, at 874,312 to 874,869 _04050 IAI46_04055: IAI46_04055 - acyl-CoA synthetase, at 874,878 to 876,209 _04055 Position (kb) 873 874 875Strain fitness (log2 ratio) -1 0 1at 872.846 kb on - strand, within IAI46_04030at 872.955 kb on + strandat 872.979 kb on + strandat 872.980 kb on - strandat 872.999 kb on + strandat 873.000 kb on - strandat 873.000 kb on - strandat 873.003 kb on + strandat 873.045 kb on - strand, within IAI46_04035at 873.174 kb on - strand, within IAI46_04035at 873.259 kb on + strand, within IAI46_04035at 873.260 kb on - strand, within IAI46_04035at 873.260 kb on - strand, within IAI46_04035at 873.299 kb on + strand, within IAI46_04035at 873.299 kb on + strand, within IAI46_04035at 873.382 kb on - strand, within IAI46_04035at 873.382 kb on - strand, within IAI46_04035at 873.383 kb on + strand, within IAI46_04035at 873.383 kb on + strand, within IAI46_04035at 873.384 kb on - strand, within IAI46_04035at 873.519 kb on + strand, within IAI46_04035at 873.519 kb on + strand, within IAI46_04035at 873.580 kb on + strand, within IAI46_04035at 873.580 kb on + strand, within IAI46_04035at 873.582 kb on + strand, within IAI46_04035at 873.583 kb on - strand, within IAI46_04035at 873.627 kb on + strand, within IAI46_04035at 873.628 kb on - strand, within IAI46_04035at 873.628 kb on - strand, within IAI46_04035at 873.692 kb on + strandat 873.731 kb on + strandat 873.732 kb on - strandat 873.735 kb on + strandat 873.735 kb on + strandat 873.759 kb on + strandat 873.793 kb on + strand, within IAI46_04040at 873.794 kb on - strand, within IAI46_04040at 873.811 kb on + strand, within IAI46_04040at 873.812 kb on - strand, within IAI46_04040at 873.963 kb on - strand, within IAI46_04040at 874.028 kb on - strandat 874.093 kb on + strand, within IAI46_04045at 874.115 kb on + strand, within IAI46_04045at 874.116 kb on - strand, within IAI46_04045at 874.131 kb on + strand, within IAI46_04045at 874.131 kb on + strand, within IAI46_04045at 874.131 kb on + strand, within IAI46_04045at 874.224 kb on + strand, within IAI46_04045at 874.272 kb on - strandat 874.272 kb on - strandat 874.272 kb on - strandat 874.284 kb on + strandat 874.358 kb on - strandat 874.432 kb on - strand, within IAI46_04050at 874.432 kb on - strand, within IAI46_04050at 874.432 kb on - strand, within IAI46_04050at 874.432 kb on - strand, within IAI46_04050at 874.558 kb on + strand, within IAI46_04050at 874.559 kb on - strand, within IAI46_04050at 874.561 kb on + strand, within IAI46_04050at 874.583 kb on + strand, within IAI46_04050at 874.583 kb on + strand, within IAI46_04050at 874.584 kb on - strand, within IAI46_04050at 874.647 kb on + strand, within IAI46_04050at 874.648 kb on - strand, within IAI46_04050at 874.684 kb on + strand, within IAI46_04050at 874.684 kb on + strand, within IAI46_04050at 874.684 kb on + strand, within IAI46_04050at 874.684 kb on + strand, within IAI46_04050at 874.685 kb on - strand, within IAI46_04050at 874.685 kb on - strand, within IAI46_04050at 874.685 kb on - strand, within IAI46_04050at 874.685 kb on - strand, within IAI46_04050at 874.687 kb on - strand, within IAI46_04050at 874.687 kb on - strand, within IAI46_04050at 874.768 kb on - strand, within IAI46_04050at 874.786 kb on + strand, within IAI46_04050at 874.787 kb on - strand, within IAI46_04050at 874.804 kb on + strand, within IAI46_04050at 874.805 kb on - strand, within IAI46_04050at 874.831 kb on - strandat 874.841 kb on + strandat 874.942 kb on + strandat 874.942 kb on + strandat 874.943 kb on - strandat 874.943 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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872,846 - IAI46_04030 0.88 -0.0
872,955 + +0.1
872,979 + +0.0
872,980 - +0.4
872,999 + -1.1
873,000 - +0.5
873,000 - +0.7
873,003 + -0.5
873,045 - IAI46_04035 0.14 -0.1
873,174 - IAI46_04035 0.30 +0.1
873,259 + IAI46_04035 0.40 +0.6
873,260 - IAI46_04035 0.40 -0.6
873,260 - IAI46_04035 0.40 -0.1
873,299 + IAI46_04035 0.45 +1.5
873,299 + IAI46_04035 0.45 +0.2
873,382 - IAI46_04035 0.55 -0.2
873,382 - IAI46_04035 0.55 +0.1
873,383 + IAI46_04035 0.55 -0.3
873,383 + IAI46_04035 0.55 +0.2
873,384 - IAI46_04035 0.56 -0.1
873,519 + IAI46_04035 0.72 +0.3
873,519 + IAI46_04035 0.72 +0.3
873,580 + IAI46_04035 0.79 +0.6
873,580 + IAI46_04035 0.79 +0.4
873,582 + IAI46_04035 0.80 -0.2
873,583 - IAI46_04035 0.80 +0.5
873,627 + IAI46_04035 0.85 +0.2
873,628 - IAI46_04035 0.85 -0.3
873,628 - IAI46_04035 0.85 -0.3
873,692 + -0.1
873,731 + -0.5
873,732 - -0.2
873,735 + +0.6
873,735 + -0.3
873,759 + -0.2
873,793 + IAI46_04040 0.16 +0.1
873,794 - IAI46_04040 0.16 +0.6
873,811 + IAI46_04040 0.23 -0.6
873,812 - IAI46_04040 0.23 +0.3
873,963 - IAI46_04040 0.81 -0.5
874,028 - -0.7
874,093 + IAI46_04045 0.28 -0.2
874,115 + IAI46_04045 0.37 +0.4
874,116 - IAI46_04045 0.37 +0.2
874,131 + IAI46_04045 0.43 +1.0
874,131 + IAI46_04045 0.43 +0.4
874,131 + IAI46_04045 0.43 -0.6
874,224 + IAI46_04045 0.80 +0.7
874,272 - +0.6
874,272 - -1.1
874,272 - -0.3
874,284 + +0.0
874,358 - -0.2
874,432 - IAI46_04050 0.22 -0.1
874,432 - IAI46_04050 0.22 -0.4
874,432 - IAI46_04050 0.22 +0.4
874,432 - IAI46_04050 0.22 +0.0
874,558 + IAI46_04050 0.44 +0.1
874,559 - IAI46_04050 0.44 +0.5
874,561 + IAI46_04050 0.45 +0.7
874,583 + IAI46_04050 0.49 +0.5
874,583 + IAI46_04050 0.49 -0.4
874,584 - IAI46_04050 0.49 +0.8
874,647 + IAI46_04050 0.60 +0.3
874,648 - IAI46_04050 0.60 -0.3
874,684 + IAI46_04050 0.67 -1.0
874,684 + IAI46_04050 0.67 +1.1
874,684 + IAI46_04050 0.67 +0.3
874,684 + IAI46_04050 0.67 -0.5
874,685 - IAI46_04050 0.67 -0.1
874,685 - IAI46_04050 0.67 +0.7
874,685 - IAI46_04050 0.67 -0.1
874,685 - IAI46_04050 0.67 +0.7
874,687 - IAI46_04050 0.67 +0.4
874,687 - IAI46_04050 0.67 +0.4
874,768 - IAI46_04050 0.82 +0.8
874,786 + IAI46_04050 0.85 -1.6
874,787 - IAI46_04050 0.85 +0.9
874,804 + IAI46_04050 0.88 +0.1
874,805 - IAI46_04050 0.88 +0.4
874,831 - +0.3
874,841 + +0.5
874,942 + +0.7
874,942 + +1.1
874,943 - +1.1
874,943 - -1.3

Or see this region's nucleotide sequence