Strain Fitness in Serratia liquefaciens MT49 around IAI46_03665

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03660 and IAI46_03665 overlap by 4 nucleotidesIAI46_03665 and IAI46_03670 are separated by 464 nucleotides IAI46_03660: IAI46_03660 - histidine ammonia-lyase, at 796,256 to 797,791 _03660 IAI46_03665: IAI46_03665 - urocanate hydratase, at 797,788 to 799,479 _03665 IAI46_03670: IAI46_03670 - aromatic acid/H+ symport family MFS transporter, at 799,944 to 801,290 _03670 Position (kb) 797 798 799 800Strain fitness (log2 ratio) -1 0 1 2at 796.842 kb on - strand, within IAI46_03660at 796.950 kb on + strand, within IAI46_03660at 796.961 kb on + strand, within IAI46_03660at 797.061 kb on - strand, within IAI46_03660at 797.071 kb on + strand, within IAI46_03660at 797.071 kb on + strand, within IAI46_03660at 797.596 kb on + strand, within IAI46_03660at 797.631 kb on + strand, within IAI46_03660at 797.632 kb on - strand, within IAI46_03660at 797.695 kb on - strandat 797.734 kb on - strandat 797.868 kb on - strandat 797.911 kb on - strandat 797.911 kb on - strandat 797.911 kb on - strandat 797.928 kb on + strandat 798.045 kb on + strand, within IAI46_03665at 798.102 kb on + strand, within IAI46_03665at 798.102 kb on + strand, within IAI46_03665at 798.103 kb on - strand, within IAI46_03665at 798.252 kb on + strand, within IAI46_03665at 798.252 kb on + strand, within IAI46_03665at 798.253 kb on - strand, within IAI46_03665at 798.253 kb on - strand, within IAI46_03665at 798.253 kb on - strand, within IAI46_03665at 798.294 kb on + strand, within IAI46_03665at 798.359 kb on + strand, within IAI46_03665at 798.360 kb on - strand, within IAI46_03665at 798.434 kb on + strand, within IAI46_03665at 798.434 kb on + strand, within IAI46_03665at 798.434 kb on + strand, within IAI46_03665at 798.435 kb on - strand, within IAI46_03665at 798.435 kb on - strand, within IAI46_03665at 798.435 kb on - strand, within IAI46_03665at 798.435 kb on - strand, within IAI46_03665at 798.435 kb on - strand, within IAI46_03665at 798.629 kb on + strand, within IAI46_03665at 798.794 kb on + strand, within IAI46_03665at 798.849 kb on - strand, within IAI46_03665at 798.849 kb on - strand, within IAI46_03665at 798.999 kb on - strand, within IAI46_03665at 799.032 kb on - strand, within IAI46_03665at 799.064 kb on + strand, within IAI46_03665at 799.064 kb on + strand, within IAI46_03665at 799.064 kb on + strand, within IAI46_03665at 799.064 kb on + strand, within IAI46_03665at 799.064 kb on + strand, within IAI46_03665at 799.064 kb on + strand, within IAI46_03665at 799.064 kb on + strand, within IAI46_03665at 799.065 kb on - strand, within IAI46_03665at 799.065 kb on - strand, within IAI46_03665at 799.094 kb on + strand, within IAI46_03665at 799.094 kb on + strand, within IAI46_03665at 799.161 kb on + strand, within IAI46_03665at 799.161 kb on + strand, within IAI46_03665at 799.287 kb on - strand, within IAI46_03665at 799.326 kb on - strandat 799.326 kb on - strandat 799.326 kb on - strandat 799.420 kb on + strandat 799.444 kb on + strandat 799.468 kb on - strandat 799.544 kb on - strandat 799.563 kb on + strandat 799.568 kb on + strandat 799.712 kb on - strandat 799.712 kb on - strandat 799.712 kb on - strandat 799.712 kb on - strandat 799.788 kb on - strandat 799.831 kb on + strandat 799.832 kb on - strandat 799.903 kb on - strandat 799.945 kb on + strandat 799.948 kb on - strandat 800.000 kb on + strandat 800.001 kb on - strandat 800.165 kb on - strand, within IAI46_03670at 800.231 kb on + strand, within IAI46_03670at 800.231 kb on + strand, within IAI46_03670at 800.231 kb on + strand, within IAI46_03670at 800.232 kb on - strand, within IAI46_03670at 800.232 kb on - strand, within IAI46_03670at 800.232 kb on - strand, within IAI46_03670at 800.321 kb on + strand, within IAI46_03670at 800.321 kb on + strand, within IAI46_03670at 800.422 kb on + strand, within IAI46_03670at 800.468 kb on - strand, within IAI46_03670at 800.470 kb on + strand, within IAI46_03670at 800.470 kb on + strand, within IAI46_03670at 800.471 kb on - strand, within IAI46_03670

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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796,842 - IAI46_03660 0.38 +0.8
796,950 + IAI46_03660 0.45 +1.9
796,961 + IAI46_03660 0.46 +0.1
797,061 - IAI46_03660 0.52 +0.6
797,071 + IAI46_03660 0.53 +0.6
797,071 + IAI46_03660 0.53 +0.5
797,596 + IAI46_03660 0.87 -0.7
797,631 + IAI46_03660 0.90 +1.2
797,632 - IAI46_03660 0.90 -0.4
797,695 - +0.2
797,734 - +0.5
797,868 - -0.5
797,911 - +1.3
797,911 - +1.3
797,911 - -0.2
797,928 + +1.6
798,045 + IAI46_03665 0.15 -0.6
798,102 + IAI46_03665 0.19 +0.0
798,102 + IAI46_03665 0.19 -0.1
798,103 - IAI46_03665 0.19 -1.6
798,252 + IAI46_03665 0.27 -0.6
798,252 + IAI46_03665 0.27 +0.7
798,253 - IAI46_03665 0.27 +0.2
798,253 - IAI46_03665 0.27 +0.5
798,253 - IAI46_03665 0.27 +0.0
798,294 + IAI46_03665 0.30 +0.4
798,359 + IAI46_03665 0.34 +1.1
798,360 - IAI46_03665 0.34 -0.2
798,434 + IAI46_03665 0.38 +0.1
798,434 + IAI46_03665 0.38 -0.1
798,434 + IAI46_03665 0.38 -0.3
798,435 - IAI46_03665 0.38 +0.0
798,435 - IAI46_03665 0.38 -1.0
798,435 - IAI46_03665 0.38 -0.4
798,435 - IAI46_03665 0.38 +0.2
798,435 - IAI46_03665 0.38 -0.8
798,629 + IAI46_03665 0.50 +0.2
798,794 + IAI46_03665 0.59 -0.1
798,849 - IAI46_03665 0.63 -0.3
798,849 - IAI46_03665 0.63 -0.5
798,999 - IAI46_03665 0.72 -0.1
799,032 - IAI46_03665 0.74 +0.5
799,064 + IAI46_03665 0.75 +0.6
799,064 + IAI46_03665 0.75 -0.2
799,064 + IAI46_03665 0.75 -0.3
799,064 + IAI46_03665 0.75 +0.3
799,064 + IAI46_03665 0.75 -0.3
799,064 + IAI46_03665 0.75 +0.6
799,064 + IAI46_03665 0.75 -0.1
799,065 - IAI46_03665 0.75 +0.7
799,065 - IAI46_03665 0.75 -0.3
799,094 + IAI46_03665 0.77 +0.8
799,094 + IAI46_03665 0.77 +0.0
799,161 + IAI46_03665 0.81 -0.6
799,161 + IAI46_03665 0.81 +0.4
799,287 - IAI46_03665 0.89 +1.9
799,326 - +0.6
799,326 - -0.2
799,326 - +0.7
799,420 + +0.4
799,444 + -1.3
799,468 - -0.3
799,544 - +0.4
799,563 + -0.1
799,568 + -0.2
799,712 - +0.3
799,712 - +0.0
799,712 - -0.1
799,712 - -0.8
799,788 - +0.5
799,831 + +0.8
799,832 - -0.3
799,903 - -0.5
799,945 + -0.8
799,948 - +1.1
800,000 + +0.0
800,001 - +0.5
800,165 - IAI46_03670 0.16 -0.3
800,231 + IAI46_03670 0.21 +0.1
800,231 + IAI46_03670 0.21 +0.2
800,231 + IAI46_03670 0.21 +0.6
800,232 - IAI46_03670 0.21 +0.4
800,232 - IAI46_03670 0.21 +0.4
800,232 - IAI46_03670 0.21 +0.4
800,321 + IAI46_03670 0.28 +0.2
800,321 + IAI46_03670 0.28 +0.1
800,422 + IAI46_03670 0.35 +0.7
800,468 - IAI46_03670 0.39 +0.2
800,470 + IAI46_03670 0.39 +0.0
800,470 + IAI46_03670 0.39 -0.5
800,471 - IAI46_03670 0.39 +0.3

Or see this region's nucleotide sequence