Strain Fitness in Serratia liquefaciens MT49 around IAI46_03320

Experiment: No stress control, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_03315 and IAI46_03320 are separated by 221 nucleotidesIAI46_03320 and IAI46_03325 are separated by 90 nucleotidesIAI46_03325 and IAI46_03330 are separated by 159 nucleotides IAI46_03315: IAI46_03315 - thiamine ABC transporter substrate binding subunit, at 715,695 to 716,681 _03315 IAI46_03320: IAI46_03320 - HTH-type transcriptional regulator SgrR, at 716,903 to 718,564 _03320 IAI46_03325: IAI46_03325 - glucose uptake inhibitor SgrT, at 718,655 to 718,828 _03325 IAI46_03330: IAI46_03330 - MFS transporter, at 718,988 to 720,193 _03330 Position (kb) 716 717 718 719Strain fitness (log2 ratio) -1 0 1 2at 715.957 kb on + strand, within IAI46_03315at 715.957 kb on + strand, within IAI46_03315at 715.958 kb on - strand, within IAI46_03315at 715.987 kb on + strand, within IAI46_03315at 715.987 kb on + strand, within IAI46_03315at 715.988 kb on - strand, within IAI46_03315at 716.018 kb on - strand, within IAI46_03315at 716.035 kb on + strand, within IAI46_03315at 716.035 kb on + strand, within IAI46_03315at 716.036 kb on - strand, within IAI46_03315at 716.039 kb on + strand, within IAI46_03315at 716.039 kb on + strand, within IAI46_03315at 716.040 kb on - strand, within IAI46_03315at 716.040 kb on - strand, within IAI46_03315at 716.040 kb on - strand, within IAI46_03315at 716.040 kb on - strand, within IAI46_03315at 716.077 kb on + strand, within IAI46_03315at 716.077 kb on + strand, within IAI46_03315at 716.078 kb on - strand, within IAI46_03315at 716.156 kb on - strand, within IAI46_03315at 716.216 kb on - strand, within IAI46_03315at 716.216 kb on - strand, within IAI46_03315at 716.216 kb on - strand, within IAI46_03315at 716.294 kb on - strand, within IAI46_03315at 716.294 kb on - strand, within IAI46_03315at 716.294 kb on - strand, within IAI46_03315at 716.314 kb on + strand, within IAI46_03315at 716.315 kb on - strand, within IAI46_03315at 716.355 kb on + strand, within IAI46_03315at 716.356 kb on - strand, within IAI46_03315at 716.395 kb on - strand, within IAI46_03315at 716.395 kb on - strand, within IAI46_03315at 716.487 kb on - strand, within IAI46_03315at 716.599 kb on + strandat 716.599 kb on + strandat 716.600 kb on - strandat 716.600 kb on - strandat 716.606 kb on - strandat 716.606 kb on - strandat 716.656 kb on - strandat 716.656 kb on - strandat 716.656 kb on - strandat 716.714 kb on + strandat 716.714 kb on + strandat 716.714 kb on + strandat 716.715 kb on - strandat 716.904 kb on + strandat 716.904 kb on + strandat 716.904 kb on + strandat 716.905 kb on - strandat 716.905 kb on - strandat 717.226 kb on + strand, within IAI46_03320at 717.227 kb on - strand, within IAI46_03320at 717.227 kb on - strand, within IAI46_03320at 717.240 kb on + strand, within IAI46_03320at 717.241 kb on - strand, within IAI46_03320at 717.256 kb on + strand, within IAI46_03320at 717.256 kb on + strand, within IAI46_03320at 717.257 kb on - strand, within IAI46_03320at 717.333 kb on + strand, within IAI46_03320at 717.334 kb on - strand, within IAI46_03320at 717.334 kb on - strand, within IAI46_03320at 717.336 kb on + strand, within IAI46_03320at 717.336 kb on + strand, within IAI46_03320at 717.336 kb on + strand, within IAI46_03320at 717.336 kb on + strand, within IAI46_03320at 717.444 kb on + strand, within IAI46_03320at 717.445 kb on - strand, within IAI46_03320at 717.475 kb on + strand, within IAI46_03320at 717.476 kb on - strand, within IAI46_03320at 717.476 kb on - strand, within IAI46_03320at 717.476 kb on - strand, within IAI46_03320at 717.545 kb on + strand, within IAI46_03320at 717.556 kb on - strand, within IAI46_03320at 717.629 kb on + strand, within IAI46_03320at 717.664 kb on + strand, within IAI46_03320at 717.699 kb on + strand, within IAI46_03320at 717.752 kb on - strand, within IAI46_03320at 717.815 kb on + strand, within IAI46_03320at 717.816 kb on - strand, within IAI46_03320at 717.816 kb on - strand, within IAI46_03320at 717.816 kb on - strand, within IAI46_03320at 717.889 kb on - strand, within IAI46_03320at 717.889 kb on - strand, within IAI46_03320at 718.018 kb on - strand, within IAI46_03320at 718.094 kb on + strand, within IAI46_03320at 718.173 kb on + strand, within IAI46_03320at 718.173 kb on + strand, within IAI46_03320at 718.173 kb on + strand, within IAI46_03320at 718.188 kb on + strand, within IAI46_03320at 718.188 kb on + strand, within IAI46_03320at 718.188 kb on + strand, within IAI46_03320at 718.188 kb on + strand, within IAI46_03320at 718.188 kb on + strand, within IAI46_03320at 718.210 kb on + strand, within IAI46_03320at 718.351 kb on + strand, within IAI46_03320at 718.354 kb on - strand, within IAI46_03320at 718.354 kb on - strand, within IAI46_03320at 718.437 kb on - strandat 718.488 kb on - strandat 718.488 kb on - strandat 718.488 kb on - strandat 718.565 kb on - strandat 718.609 kb on + strandat 718.610 kb on - strandat 718.612 kb on - strandat 718.614 kb on + strandat 718.682 kb on + strand, within IAI46_03325at 718.682 kb on + strand, within IAI46_03325at 718.682 kb on + strand, within IAI46_03325at 718.811 kb on + strandat 718.812 kb on - strandat 718.856 kb on + strandat 718.886 kb on - strandat 718.886 kb on - strandat 718.887 kb on + strandat 718.887 kb on + strandat 718.888 kb on - strandat 718.888 kb on - strandat 718.888 kb on - strandat 718.888 kb on - strandat 718.888 kb on - strandat 718.888 kb on - strandat 718.948 kb on + strandat 718.949 kb on - strandat 718.969 kb on - strandat 718.987 kb on + strandat 719.021 kb on - strandat 719.107 kb on - strandat 719.120 kb on - strand, within IAI46_03330at 719.150 kb on + strand, within IAI46_03330at 719.151 kb on - strand, within IAI46_03330at 719.151 kb on - strand, within IAI46_03330at 719.151 kb on - strand, within IAI46_03330at 719.153 kb on - strand, within IAI46_03330at 719.294 kb on + strand, within IAI46_03330at 719.295 kb on - strand, within IAI46_03330at 719.308 kb on + strand, within IAI46_03330at 719.378 kb on + strand, within IAI46_03330at 719.378 kb on + strand, within IAI46_03330at 719.473 kb on + strand, within IAI46_03330at 719.473 kb on + strand, within IAI46_03330at 719.498 kb on - strand, within IAI46_03330at 719.498 kb on - strand, within IAI46_03330

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
remove
715,957 + IAI46_03315 0.27 -0.2
715,957 + IAI46_03315 0.27 -0.2
715,958 - IAI46_03315 0.27 +0.0
715,987 + IAI46_03315 0.30 +0.6
715,987 + IAI46_03315 0.30 +0.9
715,988 - IAI46_03315 0.30 +1.5
716,018 - IAI46_03315 0.33 +0.4
716,035 + IAI46_03315 0.34 -0.3
716,035 + IAI46_03315 0.34 +0.5
716,036 - IAI46_03315 0.35 -0.1
716,039 + IAI46_03315 0.35 +0.5
716,039 + IAI46_03315 0.35 -0.3
716,040 - IAI46_03315 0.35 -0.2
716,040 - IAI46_03315 0.35 +0.8
716,040 - IAI46_03315 0.35 -0.7
716,040 - IAI46_03315 0.35 +0.3
716,077 + IAI46_03315 0.39 -0.2
716,077 + IAI46_03315 0.39 +1.0
716,078 - IAI46_03315 0.39 -0.2
716,156 - IAI46_03315 0.47 +1.0
716,216 - IAI46_03315 0.53 +0.5
716,216 - IAI46_03315 0.53 +0.1
716,216 - IAI46_03315 0.53 +0.6
716,294 - IAI46_03315 0.61 +1.2
716,294 - IAI46_03315 0.61 +0.3
716,294 - IAI46_03315 0.61 +0.2
716,314 + IAI46_03315 0.63 -0.5
716,315 - IAI46_03315 0.63 -0.4
716,355 + IAI46_03315 0.67 +0.1
716,356 - IAI46_03315 0.67 +0.9
716,395 - IAI46_03315 0.71 -0.5
716,395 - IAI46_03315 0.71 +0.9
716,487 - IAI46_03315 0.80 +1.3
716,599 + +0.5
716,599 + -0.1
716,600 - +0.3
716,600 - +0.1
716,606 - -1.0
716,606 - -0.5
716,656 - +0.0
716,656 - -0.3
716,656 - +2.3
716,714 + -1.7
716,714 + +0.1
716,714 + +1.0
716,715 - +0.8
716,904 + +0.8
716,904 + -0.4
716,904 + -0.2
716,905 - +0.1
716,905 - -1.2
717,226 + IAI46_03320 0.19 -1.3
717,227 - IAI46_03320 0.19 +0.4
717,227 - IAI46_03320 0.19 +1.4
717,240 + IAI46_03320 0.20 +0.6
717,241 - IAI46_03320 0.20 +0.3
717,256 + IAI46_03320 0.21 +0.4
717,256 + IAI46_03320 0.21 +1.3
717,257 - IAI46_03320 0.21 -0.3
717,333 + IAI46_03320 0.26 +0.1
717,334 - IAI46_03320 0.26 -0.3
717,334 - IAI46_03320 0.26 -0.3
717,336 + IAI46_03320 0.26 -0.6
717,336 + IAI46_03320 0.26 -0.1
717,336 + IAI46_03320 0.26 +0.0
717,336 + IAI46_03320 0.26 -0.1
717,444 + IAI46_03320 0.33 +0.5
717,445 - IAI46_03320 0.33 -0.1
717,475 + IAI46_03320 0.34 +1.6
717,476 - IAI46_03320 0.34 +0.6
717,476 - IAI46_03320 0.34 +0.4
717,476 - IAI46_03320 0.34 +0.0
717,545 + IAI46_03320 0.39 -1.6
717,556 - IAI46_03320 0.39 +0.2
717,629 + IAI46_03320 0.44 -1.2
717,664 + IAI46_03320 0.46 +0.4
717,699 + IAI46_03320 0.48 -0.9
717,752 - IAI46_03320 0.51 -0.1
717,815 + IAI46_03320 0.55 -0.5
717,816 - IAI46_03320 0.55 +0.1
717,816 - IAI46_03320 0.55 +0.1
717,816 - IAI46_03320 0.55 +0.7
717,889 - IAI46_03320 0.59 +0.7
717,889 - IAI46_03320 0.59 +0.3
718,018 - IAI46_03320 0.67 +0.4
718,094 + IAI46_03320 0.72 -0.1
718,173 + IAI46_03320 0.76 +0.2
718,173 + IAI46_03320 0.76 -0.3
718,173 + IAI46_03320 0.76 -0.0
718,188 + IAI46_03320 0.77 +0.6
718,188 + IAI46_03320 0.77 -0.1
718,188 + IAI46_03320 0.77 -0.6
718,188 + IAI46_03320 0.77 +0.1
718,188 + IAI46_03320 0.77 -0.2
718,210 + IAI46_03320 0.79 -1.7
718,351 + IAI46_03320 0.87 -0.2
718,354 - IAI46_03320 0.87 +0.3
718,354 - IAI46_03320 0.87 -1.5
718,437 - -0.7
718,488 - -0.7
718,488 - +0.2
718,488 - -1.5
718,565 - -0.0
718,609 + -0.4
718,610 - +0.3
718,612 - +0.2
718,614 + -0.5
718,682 + IAI46_03325 0.16 +0.8
718,682 + IAI46_03325 0.16 -0.0
718,682 + IAI46_03325 0.16 -0.9
718,811 + +0.3
718,812 - -0.0
718,856 + +0.6
718,886 - +0.1
718,886 - +0.1
718,887 + +0.4
718,887 + +0.5
718,888 - -1.7
718,888 - -1.1
718,888 - +0.1
718,888 - -0.0
718,888 - +0.4
718,888 - +0.8
718,948 + +0.2
718,949 - -0.4
718,969 - -0.1
718,987 + -1.1
719,021 - +0.4
719,107 - +0.2
719,120 - IAI46_03330 0.11 +0.9
719,150 + IAI46_03330 0.13 +0.6
719,151 - IAI46_03330 0.14 +0.9
719,151 - IAI46_03330 0.14 +0.4
719,151 - IAI46_03330 0.14 -0.2
719,153 - IAI46_03330 0.14 +0.5
719,294 + IAI46_03330 0.25 +0.0
719,295 - IAI46_03330 0.25 -0.1
719,308 + IAI46_03330 0.27 -0.1
719,378 + IAI46_03330 0.32 +0.4
719,378 + IAI46_03330 0.32 -0.3
719,473 + IAI46_03330 0.40 -0.4
719,473 + IAI46_03330 0.40 -0.2
719,498 - IAI46_03330 0.42 +0.6
719,498 - IAI46_03330 0.42 -0.2

Or see this region's nucleotide sequence