Strain Fitness in Serratia liquefaciens MT49 around IAI46_03115

Experiment: No stress control, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_03105 and IAI46_03110 are separated by 0 nucleotidesIAI46_03110 and IAI46_03115 are separated by 1 nucleotidesIAI46_03115 and IAI46_03120 overlap by 20 nucleotides IAI46_03105: IAI46_03105 - isoleucine--tRNA ligase, at 663,985 to 666,801 _03105 IAI46_03110: IAI46_03110 - signal peptidase II, at 666,802 to 667,311 _03110 IAI46_03115: IAI46_03115 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 667,313 to 667,783 _03115 IAI46_03120: IAI46_03120 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 667,764 to 668,717 _03120 Position (kb) 667 668Strain fitness (log2 ratio) -1 0 1at 667.312 kb on + strandat 667.312 kb on + strandat 667.312 kb on + strandat 667.312 kb on + strandat 667.312 kb on + strandat 667.501 kb on + strand, within IAI46_03115at 667.553 kb on + strand, within IAI46_03115at 668.716 kb on - strandat 668.728 kb on + strandat 668.733 kb on - strandat 668.749 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
remove
667,312 + +0.4
667,312 + -0.2
667,312 + -0.4
667,312 + -0.3
667,312 + -1.2
667,501 + IAI46_03115 0.40 -0.4
667,553 + IAI46_03115 0.51 -0.1
668,716 - +0.3
668,728 + +0.4
668,733 - +0.0
668,749 + +0.4

Or see this region's nucleotide sequence