Strain Fitness in Serratia liquefaciens MT49 around IAI46_02710

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02700 and IAI46_02705 overlap by 8 nucleotidesIAI46_02705 and IAI46_02710 are separated by 10 nucleotidesIAI46_02710 and IAI46_02715 are separated by 4 nucleotidesIAI46_02715 and IAI46_02720 are separated by 96 nucleotides IAI46_02700: IAI46_02700 - DUF3156 family protein, at 583,691 to 584,278 _02700 IAI46_02705: IAI46_02705 - SDR family oxidoreductase, at 584,271 to 585,053 _02705 IAI46_02710: IAI46_02710 - molybdenum cofactor biosynthesis F family protein, at 585,064 to 585,861 _02710 IAI46_02715: IAI46_02715 - SDR family oxidoreductase, at 585,866 to 586,657 _02715 IAI46_02720: IAI46_02720 - homoprotocatechuate degradation operon regulator HpaR, at 586,754 to 587,206 _02720 Position (kb) 585 586Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 584.098 kb on + strand, within IAI46_02700at 584.099 kb on - strand, within IAI46_02700at 584.192 kb on + strand, within IAI46_02700at 584.277 kb on - strandat 584.277 kb on - strandat 584.277 kb on - strandat 584.360 kb on + strand, within IAI46_02705at 584.360 kb on + strand, within IAI46_02705at 584.360 kb on + strand, within IAI46_02705at 584.360 kb on + strand, within IAI46_02705at 584.361 kb on - strand, within IAI46_02705at 584.760 kb on + strand, within IAI46_02705at 584.877 kb on + strand, within IAI46_02705at 584.877 kb on + strand, within IAI46_02705at 584.878 kb on - strand, within IAI46_02705at 584.887 kb on + strand, within IAI46_02705at 584.888 kb on - strand, within IAI46_02705at 585.025 kb on + strandat 585.041 kb on + strandat 585.041 kb on + strandat 585.041 kb on + strandat 585.052 kb on - strandat 585.070 kb on - strandat 585.080 kb on + strandat 585.084 kb on + strandat 585.085 kb on - strandat 585.129 kb on + strandat 585.130 kb on - strandat 585.130 kb on - strandat 585.159 kb on + strand, within IAI46_02710at 585.173 kb on + strand, within IAI46_02710at 585.173 kb on + strand, within IAI46_02710at 585.241 kb on + strand, within IAI46_02710at 585.242 kb on - strand, within IAI46_02710at 585.257 kb on - strand, within IAI46_02710at 585.373 kb on + strand, within IAI46_02710at 585.373 kb on + strand, within IAI46_02710at 585.374 kb on - strand, within IAI46_02710at 585.534 kb on + strand, within IAI46_02710at 585.534 kb on + strand, within IAI46_02710at 585.535 kb on - strand, within IAI46_02710at 585.541 kb on + strand, within IAI46_02710at 585.541 kb on + strand, within IAI46_02710at 585.541 kb on + strand, within IAI46_02710at 585.541 kb on + strand, within IAI46_02710at 585.541 kb on + strand, within IAI46_02710at 585.541 kb on + strand, within IAI46_02710at 585.541 kb on + strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.543 kb on + strand, within IAI46_02710at 585.543 kb on + strand, within IAI46_02710at 585.543 kb on + strand, within IAI46_02710at 585.543 kb on + strand, within IAI46_02710at 585.544 kb on - strand, within IAI46_02710at 585.544 kb on - strand, within IAI46_02710at 585.547 kb on + strand, within IAI46_02710at 585.547 kb on + strand, within IAI46_02710at 585.547 kb on + strand, within IAI46_02710at 585.548 kb on - strand, within IAI46_02710at 585.548 kb on - strand, within IAI46_02710at 585.548 kb on - strand, within IAI46_02710at 585.548 kb on - strand, within IAI46_02710at 585.548 kb on - strand, within IAI46_02710at 585.565 kb on + strand, within IAI46_02710at 585.578 kb on - strand, within IAI46_02710at 585.578 kb on - strand, within IAI46_02710at 585.596 kb on - strand, within IAI46_02710at 585.655 kb on + strand, within IAI46_02710at 585.655 kb on + strand, within IAI46_02710at 585.679 kb on + strand, within IAI46_02710at 585.679 kb on + strand, within IAI46_02710at 585.680 kb on - strand, within IAI46_02710at 585.680 kb on - strand, within IAI46_02710at 585.680 kb on - strand, within IAI46_02710at 585.680 kb on - strand, within IAI46_02710at 585.859 kb on + strandat 585.859 kb on + strandat 585.860 kb on - strandat 585.878 kb on + strandat 585.878 kb on + strandat 585.878 kb on + strandat 585.878 kb on + strandat 586.160 kb on + strand, within IAI46_02715at 586.160 kb on + strand, within IAI46_02715at 586.161 kb on - strand, within IAI46_02715at 586.200 kb on + strand, within IAI46_02715at 586.350 kb on - strand, within IAI46_02715at 586.371 kb on + strand, within IAI46_02715at 586.372 kb on - strand, within IAI46_02715at 586.382 kb on - strand, within IAI46_02715at 586.586 kb on + strandat 586.587 kb on - strandat 586.587 kb on - strandat 586.587 kb on - strandat 586.587 kb on - strandat 586.587 kb on - strandat 586.588 kb on + strandat 586.588 kb on + strandat 586.588 kb on + strandat 586.588 kb on + strandat 586.589 kb on - strandat 586.678 kb on + strandat 586.678 kb on + strandat 586.682 kb on - strandat 586.729 kb on - strandat 586.742 kb on + strandat 586.742 kb on + strandat 586.824 kb on - strand, within IAI46_02720

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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584,098 + IAI46_02700 0.69 -1.1
584,099 - IAI46_02700 0.69 +1.1
584,192 + IAI46_02700 0.85 -1.0
584,277 - +0.6
584,277 - +0.0
584,277 - +0.9
584,360 + IAI46_02705 0.11 +0.1
584,360 + IAI46_02705 0.11 -0.0
584,360 + IAI46_02705 0.11 -0.6
584,360 + IAI46_02705 0.11 -0.9
584,361 - IAI46_02705 0.11 +0.1
584,760 + IAI46_02705 0.62 +0.8
584,877 + IAI46_02705 0.77 -0.9
584,877 + IAI46_02705 0.77 -1.3
584,878 - IAI46_02705 0.78 +0.4
584,887 + IAI46_02705 0.79 +0.6
584,888 - IAI46_02705 0.79 -2.8
585,025 + -0.3
585,041 + -0.2
585,041 + -0.1
585,041 + +0.5
585,052 - +0.3
585,070 - -0.1
585,080 + +1.1
585,084 + -0.1
585,085 - +0.4
585,129 + +0.1
585,130 - +0.0
585,130 - +0.3
585,159 + IAI46_02710 0.12 +0.5
585,173 + IAI46_02710 0.14 +0.7
585,173 + IAI46_02710 0.14 -0.2
585,241 + IAI46_02710 0.22 +0.4
585,242 - IAI46_02710 0.22 +0.1
585,257 - IAI46_02710 0.24 +0.0
585,373 + IAI46_02710 0.39 +0.1
585,373 + IAI46_02710 0.39 +0.1
585,374 - IAI46_02710 0.39 +0.0
585,534 + IAI46_02710 0.59 -0.5
585,534 + IAI46_02710 0.59 -0.0
585,535 - IAI46_02710 0.59 +0.0
585,541 + IAI46_02710 0.60 +1.2
585,541 + IAI46_02710 0.60 -0.6
585,541 + IAI46_02710 0.60 -0.5
585,541 + IAI46_02710 0.60 +0.1
585,541 + IAI46_02710 0.60 -1.2
585,541 + IAI46_02710 0.60 +0.3
585,541 + IAI46_02710 0.60 +0.3
585,542 - IAI46_02710 0.60 +0.3
585,542 - IAI46_02710 0.60 +0.5
585,542 - IAI46_02710 0.60 -0.4
585,542 - IAI46_02710 0.60 +0.9
585,542 - IAI46_02710 0.60 +1.0
585,542 - IAI46_02710 0.60 +0.7
585,542 - IAI46_02710 0.60 +0.7
585,542 - IAI46_02710 0.60 -0.1
585,542 - IAI46_02710 0.60 -0.9
585,542 - IAI46_02710 0.60 -0.2
585,542 - IAI46_02710 0.60 +0.9
585,542 - IAI46_02710 0.60 +0.0
585,543 + IAI46_02710 0.60 -0.3
585,543 + IAI46_02710 0.60 -2.6
585,543 + IAI46_02710 0.60 -1.1
585,543 + IAI46_02710 0.60 -0.3
585,544 - IAI46_02710 0.60 -0.2
585,544 - IAI46_02710 0.60 +2.8
585,547 + IAI46_02710 0.61 -0.2
585,547 + IAI46_02710 0.61 +0.7
585,547 + IAI46_02710 0.61 +0.7
585,548 - IAI46_02710 0.61 +0.2
585,548 - IAI46_02710 0.61 -0.7
585,548 - IAI46_02710 0.61 -0.9
585,548 - IAI46_02710 0.61 +1.1
585,548 - IAI46_02710 0.61 +0.6
585,565 + IAI46_02710 0.63 -0.9
585,578 - IAI46_02710 0.64 +0.6
585,578 - IAI46_02710 0.64 -0.1
585,596 - IAI46_02710 0.67 +0.5
585,655 + IAI46_02710 0.74 +0.6
585,655 + IAI46_02710 0.74 -0.2
585,679 + IAI46_02710 0.77 +0.1
585,679 + IAI46_02710 0.77 +0.0
585,680 - IAI46_02710 0.77 +0.3
585,680 - IAI46_02710 0.77 +0.4
585,680 - IAI46_02710 0.77 -0.9
585,680 - IAI46_02710 0.77 +0.1
585,859 + -0.5
585,859 + -1.2
585,860 - +0.2
585,878 + +1.0
585,878 + +0.2
585,878 + -0.5
585,878 + +0.6
586,160 + IAI46_02715 0.37 -0.3
586,160 + IAI46_02715 0.37 -0.1
586,161 - IAI46_02715 0.37 -0.2
586,200 + IAI46_02715 0.42 +0.3
586,350 - IAI46_02715 0.61 +0.7
586,371 + IAI46_02715 0.64 -0.4
586,372 - IAI46_02715 0.64 -0.0
586,382 - IAI46_02715 0.65 +0.8
586,586 + -0.0
586,587 - +0.2
586,587 - +0.5
586,587 - -0.8
586,587 - +1.5
586,587 - +0.5
586,588 + +0.5
586,588 + -0.0
586,588 + -0.4
586,588 + -0.5
586,589 - +0.8
586,678 + -1.0
586,678 + +0.8
586,682 - +0.2
586,729 - +1.1
586,742 + -0.4
586,742 + +0.1
586,824 - IAI46_02720 0.15 +0.2

Or see this region's nucleotide sequence