Strain Fitness in Serratia liquefaciens MT49 around IAI46_02525

Experiment: No stress control, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_02515 and IAI46_02520 are separated by 24 nucleotidesIAI46_02520 and IAI46_02525 overlap by 4 nucleotidesIAI46_02525 and IAI46_02530 overlap by 8 nucleotides IAI46_02515: IAI46_02515 - cytosine permease, at 542,805 to 544,199 _02515 IAI46_02520: IAI46_02520 - RidA family protein, at 544,224 to 544,664 _02520 IAI46_02525: IAI46_02525 - DUF1028 domain-containing protein, at 544,661 to 545,335 _02525 IAI46_02530: IAI46_02530 - acetylornithine deacetylase, at 545,328 to 546,476 _02530 Position (kb) 544 545 546Strain fitness (log2 ratio) -2 -1 0 1at 543.698 kb on + strand, within IAI46_02515at 543.699 kb on - strand, within IAI46_02515at 543.705 kb on + strand, within IAI46_02515at 543.706 kb on - strand, within IAI46_02515at 543.761 kb on - strand, within IAI46_02515at 543.765 kb on - strand, within IAI46_02515at 543.765 kb on - strand, within IAI46_02515at 543.765 kb on - strand, within IAI46_02515at 543.765 kb on - strand, within IAI46_02515at 543.799 kb on + strand, within IAI46_02515at 543.800 kb on - strand, within IAI46_02515at 543.824 kb on + strand, within IAI46_02515at 543.825 kb on - strand, within IAI46_02515at 543.825 kb on - strand, within IAI46_02515at 543.828 kb on + strand, within IAI46_02515at 543.829 kb on - strand, within IAI46_02515at 543.829 kb on - strand, within IAI46_02515at 543.829 kb on - strand, within IAI46_02515at 543.829 kb on - strand, within IAI46_02515at 543.829 kb on - strand, within IAI46_02515at 543.830 kb on + strand, within IAI46_02515at 543.831 kb on - strand, within IAI46_02515at 543.936 kb on - strand, within IAI46_02515at 543.936 kb on - strand, within IAI46_02515at 543.945 kb on + strand, within IAI46_02515at 543.945 kb on + strand, within IAI46_02515at 543.946 kb on - strand, within IAI46_02515at 543.953 kb on + strand, within IAI46_02515at 543.953 kb on + strand, within IAI46_02515at 543.953 kb on + strand, within IAI46_02515at 543.954 kb on - strand, within IAI46_02515at 543.954 kb on - strand, within IAI46_02515at 543.954 kb on - strand, within IAI46_02515at 543.954 kb on - strand, within IAI46_02515at 543.981 kb on - strand, within IAI46_02515at 543.981 kb on - strand, within IAI46_02515at 543.984 kb on + strand, within IAI46_02515at 543.984 kb on + strand, within IAI46_02515at 543.985 kb on - strand, within IAI46_02515at 543.985 kb on - strand, within IAI46_02515at 543.985 kb on - strand, within IAI46_02515at 543.985 kb on - strand, within IAI46_02515at 543.990 kb on + strand, within IAI46_02515at 543.991 kb on - strand, within IAI46_02515at 543.996 kb on - strand, within IAI46_02515at 543.996 kb on - strand, within IAI46_02515at 544.017 kb on + strand, within IAI46_02515at 544.018 kb on - strand, within IAI46_02515at 544.018 kb on - strand, within IAI46_02515at 544.024 kb on + strand, within IAI46_02515at 544.025 kb on - strand, within IAI46_02515at 544.025 kb on - strand, within IAI46_02515at 544.028 kb on + strand, within IAI46_02515at 544.028 kb on + strand, within IAI46_02515at 544.055 kb on + strand, within IAI46_02515at 544.063 kb on + strandat 544.063 kb on + strandat 544.063 kb on + strandat 544.064 kb on - strandat 544.064 kb on - strandat 544.066 kb on - strandat 544.066 kb on - strandat 544.066 kb on - strandat 544.088 kb on + strandat 544.143 kb on + strandat 544.143 kb on + strandat 544.143 kb on + strandat 544.146 kb on + strandat 544.197 kb on + strandat 544.197 kb on + strandat 544.198 kb on - strandat 544.210 kb on - strandat 544.230 kb on - strandat 544.234 kb on + strandat 544.234 kb on + strandat 544.235 kb on - strandat 544.235 kb on - strandat 544.259 kb on + strandat 544.262 kb on + strandat 544.263 kb on - strandat 544.265 kb on + strandat 544.266 kb on - strandat 544.281 kb on - strand, within IAI46_02520at 544.281 kb on - strand, within IAI46_02520at 544.335 kb on + strand, within IAI46_02520at 544.335 kb on + strand, within IAI46_02520at 544.336 kb on - strand, within IAI46_02520at 544.336 kb on - strand, within IAI46_02520at 544.466 kb on + strand, within IAI46_02520at 544.466 kb on + strand, within IAI46_02520at 544.466 kb on + strand, within IAI46_02520at 544.466 kb on + strand, within IAI46_02520at 544.467 kb on - strand, within IAI46_02520at 544.472 kb on + strand, within IAI46_02520at 544.473 kb on - strand, within IAI46_02520at 544.485 kb on + strand, within IAI46_02520at 544.485 kb on + strand, within IAI46_02520at 544.485 kb on + strand, within IAI46_02520at 544.486 kb on - strand, within IAI46_02520at 544.486 kb on - strand, within IAI46_02520at 544.486 kb on - strand, within IAI46_02520at 544.486 kb on - strand, within IAI46_02520at 544.491 kb on - strand, within IAI46_02520at 544.503 kb on + strand, within IAI46_02520at 544.533 kb on - strand, within IAI46_02520at 544.541 kb on + strand, within IAI46_02520at 544.542 kb on - strand, within IAI46_02520at 544.542 kb on - strand, within IAI46_02520at 544.542 kb on - strand, within IAI46_02520at 544.556 kb on + strand, within IAI46_02520at 544.616 kb on + strand, within IAI46_02520at 544.619 kb on + strand, within IAI46_02520at 544.619 kb on + strand, within IAI46_02520at 544.620 kb on - strand, within IAI46_02520at 544.620 kb on - strand, within IAI46_02520at 544.660 kb on + strandat 544.660 kb on + strandat 544.660 kb on + strandat 544.661 kb on - strandat 544.661 kb on - strandat 544.872 kb on + strand, within IAI46_02525at 544.873 kb on - strand, within IAI46_02525at 544.873 kb on - strand, within IAI46_02525at 544.892 kb on - strand, within IAI46_02525at 544.911 kb on + strand, within IAI46_02525at 544.912 kb on - strand, within IAI46_02525at 544.912 kb on - strand, within IAI46_02525at 544.917 kb on + strand, within IAI46_02525at 544.918 kb on - strand, within IAI46_02525at 544.918 kb on - strand, within IAI46_02525at 544.918 kb on - strand, within IAI46_02525at 544.918 kb on - strand, within IAI46_02525at 544.946 kb on - strand, within IAI46_02525at 544.970 kb on + strand, within IAI46_02525at 544.970 kb on + strand, within IAI46_02525at 544.970 kb on + strand, within IAI46_02525at 544.970 kb on + strand, within IAI46_02525at 544.970 kb on + strand, within IAI46_02525at 544.971 kb on - strand, within IAI46_02525at 544.971 kb on - strand, within IAI46_02525at 544.971 kb on - strand, within IAI46_02525at 544.971 kb on - strand, within IAI46_02525at 544.971 kb on - strand, within IAI46_02525at 545.156 kb on - strand, within IAI46_02525at 545.171 kb on + strand, within IAI46_02525at 545.172 kb on - strand, within IAI46_02525at 545.193 kb on + strand, within IAI46_02525at 545.224 kb on + strand, within IAI46_02525at 545.252 kb on + strand, within IAI46_02525at 545.252 kb on + strand, within IAI46_02525at 545.252 kb on + strand, within IAI46_02525at 545.253 kb on - strand, within IAI46_02525at 545.253 kb on - strand, within IAI46_02525at 545.274 kb on - strandat 545.289 kb on + strandat 545.290 kb on - strandat 545.290 kb on - strandat 545.312 kb on + strandat 545.375 kb on + strandat 545.414 kb on + strandat 545.414 kb on + strandat 545.415 kb on - strandat 545.415 kb on - strandat 545.424 kb on + strandat 545.541 kb on - strand, within IAI46_02530at 545.614 kb on - strand, within IAI46_02530at 545.724 kb on + strand, within IAI46_02530at 545.752 kb on + strand, within IAI46_02530at 545.752 kb on + strand, within IAI46_02530at 545.775 kb on - strand, within IAI46_02530at 545.820 kb on - strand, within IAI46_02530at 545.846 kb on + strand, within IAI46_02530at 545.871 kb on - strand, within IAI46_02530at 545.901 kb on + strand, within IAI46_02530at 545.902 kb on - strand, within IAI46_02530at 545.902 kb on - strand, within IAI46_02530at 545.902 kb on - strand, within IAI46_02530at 545.902 kb on - strand, within IAI46_02530at 545.902 kb on - strand, within IAI46_02530at 545.903 kb on + strand, within IAI46_02530at 545.904 kb on - strand, within IAI46_02530at 545.904 kb on - strand, within IAI46_02530at 545.931 kb on + strand, within IAI46_02530at 545.957 kb on - strand, within IAI46_02530at 546.013 kb on - strand, within IAI46_02530at 546.111 kb on - strand, within IAI46_02530at 546.203 kb on + strand, within IAI46_02530at 546.203 kb on + strand, within IAI46_02530at 546.203 kb on + strand, within IAI46_02530at 546.203 kb on + strand, within IAI46_02530at 546.204 kb on - strand, within IAI46_02530at 546.204 kb on - strand, within IAI46_02530at 546.204 kb on - strand, within IAI46_02530at 546.218 kb on - strand, within IAI46_02530at 546.285 kb on - strand, within IAI46_02530at 546.331 kb on + strand, within IAI46_02530at 546.331 kb on + strand, within IAI46_02530

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
remove
543,698 + IAI46_02515 0.64 +0.8
543,699 - IAI46_02515 0.64 +0.5
543,705 + IAI46_02515 0.65 +0.1
543,706 - IAI46_02515 0.65 +0.4
543,761 - IAI46_02515 0.69 -0.3
543,765 - IAI46_02515 0.69 -0.1
543,765 - IAI46_02515 0.69 -0.2
543,765 - IAI46_02515 0.69 +0.1
543,765 - IAI46_02515 0.69 -0.3
543,799 + IAI46_02515 0.71 -0.3
543,800 - IAI46_02515 0.71 +0.8
543,824 + IAI46_02515 0.73 -0.3
543,825 - IAI46_02515 0.73 -0.1
543,825 - IAI46_02515 0.73 +0.2
543,828 + IAI46_02515 0.73 +0.4
543,829 - IAI46_02515 0.73 +0.0
543,829 - IAI46_02515 0.73 -1.3
543,829 - IAI46_02515 0.73 -1.5
543,829 - IAI46_02515 0.73 +0.0
543,829 - IAI46_02515 0.73 +0.1
543,830 + IAI46_02515 0.73 +0.9
543,831 - IAI46_02515 0.74 +1.3
543,936 - IAI46_02515 0.81 -0.5
543,936 - IAI46_02515 0.81 -0.4
543,945 + IAI46_02515 0.82 +0.5
543,945 + IAI46_02515 0.82 +0.4
543,946 - IAI46_02515 0.82 -0.3
543,953 + IAI46_02515 0.82 -0.1
543,953 + IAI46_02515 0.82 +1.1
543,953 + IAI46_02515 0.82 -0.1
543,954 - IAI46_02515 0.82 -0.2
543,954 - IAI46_02515 0.82 +0.4
543,954 - IAI46_02515 0.82 +0.1
543,954 - IAI46_02515 0.82 -0.3
543,981 - IAI46_02515 0.84 -0.3
543,981 - IAI46_02515 0.84 +0.0
543,984 + IAI46_02515 0.85 +0.1
543,984 + IAI46_02515 0.85 -0.2
543,985 - IAI46_02515 0.85 +0.0
543,985 - IAI46_02515 0.85 +1.4
543,985 - IAI46_02515 0.85 -0.5
543,985 - IAI46_02515 0.85 +0.5
543,990 + IAI46_02515 0.85 -0.3
543,991 - IAI46_02515 0.85 -0.5
543,996 - IAI46_02515 0.85 +0.7
543,996 - IAI46_02515 0.85 +0.6
544,017 + IAI46_02515 0.87 +0.2
544,018 - IAI46_02515 0.87 +0.9
544,018 - IAI46_02515 0.87 +0.8
544,024 + IAI46_02515 0.87 -0.7
544,025 - IAI46_02515 0.87 -2.0
544,025 - IAI46_02515 0.87 +0.1
544,028 + IAI46_02515 0.88 +0.7
544,028 + IAI46_02515 0.88 +0.1
544,055 + IAI46_02515 0.90 -0.9
544,063 + +0.5
544,063 + -0.6
544,063 + +0.1
544,064 - +0.2
544,064 - -0.7
544,066 - +0.2
544,066 - -0.1
544,066 - -0.0
544,088 + -0.4
544,143 + -0.5
544,143 + +0.6
544,143 + -0.9
544,146 + -0.3
544,197 + +0.6
544,197 + -0.4
544,198 - -0.6
544,210 - -0.9
544,230 - +0.6
544,234 + +0.4
544,234 + +1.0
544,235 - -0.2
544,235 - -0.2
544,259 + -0.1
544,262 + -0.2
544,263 - -0.8
544,265 + +0.1
544,266 - -0.5
544,281 - IAI46_02520 0.13 +1.1
544,281 - IAI46_02520 0.13 +0.6
544,335 + IAI46_02520 0.25 +0.4
544,335 + IAI46_02520 0.25 +0.5
544,336 - IAI46_02520 0.25 -1.3
544,336 - IAI46_02520 0.25 +0.9
544,466 + IAI46_02520 0.55 -0.3
544,466 + IAI46_02520 0.55 +0.5
544,466 + IAI46_02520 0.55 +1.0
544,466 + IAI46_02520 0.55 +1.2
544,467 - IAI46_02520 0.55 +1.1
544,472 + IAI46_02520 0.56 -2.0
544,473 - IAI46_02520 0.56 -0.5
544,485 + IAI46_02520 0.59 +0.1
544,485 + IAI46_02520 0.59 +0.2
544,485 + IAI46_02520 0.59 +0.5
544,486 - IAI46_02520 0.59 -0.5
544,486 - IAI46_02520 0.59 +0.2
544,486 - IAI46_02520 0.59 +0.8
544,486 - IAI46_02520 0.59 -0.1
544,491 - IAI46_02520 0.61 +0.6
544,503 + IAI46_02520 0.63 +0.5
544,533 - IAI46_02520 0.70 +1.0
544,541 + IAI46_02520 0.72 +0.5
544,542 - IAI46_02520 0.72 +0.1
544,542 - IAI46_02520 0.72 +0.3
544,542 - IAI46_02520 0.72 +0.8
544,556 + IAI46_02520 0.75 -0.3
544,616 + IAI46_02520 0.89 +1.7
544,619 + IAI46_02520 0.90 +0.3
544,619 + IAI46_02520 0.90 +0.7
544,620 - IAI46_02520 0.90 -0.2
544,620 - IAI46_02520 0.90 -0.3
544,660 + +0.3
544,660 + +1.1
544,660 + +0.2
544,661 - +0.2
544,661 - -0.4
544,872 + IAI46_02525 0.31 +0.3
544,873 - IAI46_02525 0.31 +0.5
544,873 - IAI46_02525 0.31 +1.5
544,892 - IAI46_02525 0.34 -0.0
544,911 + IAI46_02525 0.37 -1.0
544,912 - IAI46_02525 0.37 +0.2
544,912 - IAI46_02525 0.37 -0.4
544,917 + IAI46_02525 0.38 -0.6
544,918 - IAI46_02525 0.38 -0.0
544,918 - IAI46_02525 0.38 +1.2
544,918 - IAI46_02525 0.38 +0.5
544,918 - IAI46_02525 0.38 -0.7
544,946 - IAI46_02525 0.42 +0.4
544,970 + IAI46_02525 0.46 +0.6
544,970 + IAI46_02525 0.46 -0.8
544,970 + IAI46_02525 0.46 +0.0
544,970 + IAI46_02525 0.46 +0.3
544,970 + IAI46_02525 0.46 +0.4
544,971 - IAI46_02525 0.46 -0.4
544,971 - IAI46_02525 0.46 -0.1
544,971 - IAI46_02525 0.46 +0.9
544,971 - IAI46_02525 0.46 -1.0
544,971 - IAI46_02525 0.46 +0.5
545,156 - IAI46_02525 0.73 -0.5
545,171 + IAI46_02525 0.76 +0.6
545,172 - IAI46_02525 0.76 +1.0
545,193 + IAI46_02525 0.79 +0.7
545,224 + IAI46_02525 0.83 +0.2
545,252 + IAI46_02525 0.88 +0.9
545,252 + IAI46_02525 0.88 +0.4
545,252 + IAI46_02525 0.88 +0.1
545,253 - IAI46_02525 0.88 +1.5
545,253 - IAI46_02525 0.88 +0.8
545,274 - +1.7
545,289 + +0.9
545,290 - -0.7
545,290 - +0.2
545,312 + -0.8
545,375 + +0.4
545,414 + -0.2
545,414 + -0.7
545,415 - +0.2
545,415 - +0.7
545,424 + -0.3
545,541 - IAI46_02530 0.19 +0.4
545,614 - IAI46_02530 0.25 +0.5
545,724 + IAI46_02530 0.34 +0.1
545,752 + IAI46_02530 0.37 -0.1
545,752 + IAI46_02530 0.37 +0.6
545,775 - IAI46_02530 0.39 +0.3
545,820 - IAI46_02530 0.43 -0.0
545,846 + IAI46_02530 0.45 +0.8
545,871 - IAI46_02530 0.47 +0.8
545,901 + IAI46_02530 0.50 -0.0
545,902 - IAI46_02530 0.50 -0.2
545,902 - IAI46_02530 0.50 +0.1
545,902 - IAI46_02530 0.50 -0.4
545,902 - IAI46_02530 0.50 -0.1
545,902 - IAI46_02530 0.50 +0.3
545,903 + IAI46_02530 0.50 -1.0
545,904 - IAI46_02530 0.50 -0.5
545,904 - IAI46_02530 0.50 -0.5
545,931 + IAI46_02530 0.52 +0.1
545,957 - IAI46_02530 0.55 +0.6
546,013 - IAI46_02530 0.60 +1.3
546,111 - IAI46_02530 0.68 +0.8
546,203 + IAI46_02530 0.76 -0.9
546,203 + IAI46_02530 0.76 -0.1
546,203 + IAI46_02530 0.76 +0.2
546,203 + IAI46_02530 0.76 +0.3
546,204 - IAI46_02530 0.76 +0.5
546,204 - IAI46_02530 0.76 +1.1
546,204 - IAI46_02530 0.76 +0.9
546,218 - IAI46_02530 0.77 +0.3
546,285 - IAI46_02530 0.83 -0.1
546,331 + IAI46_02530 0.87 -0.1
546,331 + IAI46_02530 0.87 -0.2

Or see this region's nucleotide sequence