Strain Fitness in Serratia liquefaciens MT49 around IAI46_02090

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02080 and IAI46_02085 are separated by 16 nucleotidesIAI46_02085 and IAI46_02090 overlap by 1 nucleotidesIAI46_02090 and IAI46_02095 overlap by 8 nucleotides IAI46_02080: IAI46_02080 - phosphonate C-P lyase system protein PhnL, at 443,405 to 444,109 _02080 IAI46_02085: IAI46_02085 - phosphonate C-P lyase system protein PhnK, at 444,126 to 444,914 _02085 IAI46_02090: IAI46_02090 - alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ, at 444,914 to 445,774 _02090 IAI46_02095: IAI46_02095 - carbon-phosphorus lyase complex subunit PhnI, at 445,767 to 446,852 _02095 Position (kb) 444 445 446Strain fitness (log2 ratio) -2 -1 0 1at 443.928 kb on + strand, within IAI46_02080at 443.928 kb on + strand, within IAI46_02080at 443.928 kb on + strand, within IAI46_02080at 443.928 kb on + strand, within IAI46_02080at 443.929 kb on - strand, within IAI46_02080at 443.929 kb on - strand, within IAI46_02080at 443.937 kb on + strand, within IAI46_02080at 444.104 kb on - strandat 444.117 kb on + strandat 444.118 kb on - strandat 444.127 kb on + strandat 444.160 kb on + strandat 444.160 kb on + strandat 444.161 kb on - strandat 444.161 kb on - strandat 444.161 kb on - strandat 444.161 kb on - strandat 444.161 kb on - strandat 444.161 kb on - strandat 444.377 kb on + strand, within IAI46_02085at 444.378 kb on - strand, within IAI46_02085at 444.382 kb on - strand, within IAI46_02085at 444.382 kb on - strand, within IAI46_02085at 444.382 kb on - strand, within IAI46_02085at 444.622 kb on - strand, within IAI46_02085at 444.675 kb on + strand, within IAI46_02085at 444.675 kb on + strand, within IAI46_02085at 444.675 kb on + strand, within IAI46_02085at 444.676 kb on - strand, within IAI46_02085at 444.676 kb on - strand, within IAI46_02085at 444.676 kb on - strand, within IAI46_02085at 444.812 kb on - strand, within IAI46_02085at 444.816 kb on - strand, within IAI46_02085at 444.833 kb on + strand, within IAI46_02085at 444.834 kb on - strand, within IAI46_02085at 444.834 kb on - strand, within IAI46_02085at 444.960 kb on + strandat 445.024 kb on - strand, within IAI46_02090at 445.070 kb on + strand, within IAI46_02090at 445.070 kb on + strand, within IAI46_02090at 445.071 kb on - strand, within IAI46_02090at 445.115 kb on - strand, within IAI46_02090at 445.131 kb on + strand, within IAI46_02090at 445.131 kb on + strand, within IAI46_02090at 445.132 kb on - strand, within IAI46_02090at 445.135 kb on + strand, within IAI46_02090at 445.135 kb on + strand, within IAI46_02090at 445.135 kb on + strand, within IAI46_02090at 445.135 kb on + strand, within IAI46_02090at 445.136 kb on - strand, within IAI46_02090at 445.136 kb on - strand, within IAI46_02090at 445.136 kb on - strand, within IAI46_02090at 445.136 kb on - strand, within IAI46_02090at 445.136 kb on - strand, within IAI46_02090at 445.136 kb on - strand, within IAI46_02090at 445.136 kb on - strand, within IAI46_02090at 445.136 kb on - strand, within IAI46_02090at 445.136 kb on - strand, within IAI46_02090at 445.230 kb on + strand, within IAI46_02090at 445.230 kb on + strand, within IAI46_02090at 445.230 kb on + strand, within IAI46_02090at 445.260 kb on + strand, within IAI46_02090at 445.260 kb on + strand, within IAI46_02090at 445.260 kb on + strand, within IAI46_02090at 445.260 kb on + strand, within IAI46_02090at 445.260 kb on + strand, within IAI46_02090at 445.260 kb on + strand, within IAI46_02090at 445.260 kb on + strand, within IAI46_02090at 445.260 kb on + strand, within IAI46_02090at 445.260 kb on + strand, within IAI46_02090at 445.260 kb on + strand, within IAI46_02090at 445.260 kb on + strand, within IAI46_02090at 445.261 kb on - strand, within IAI46_02090at 445.300 kb on - strand, within IAI46_02090at 445.324 kb on - strand, within IAI46_02090at 445.404 kb on + strand, within IAI46_02090at 445.753 kb on - strandat 445.761 kb on - strandat 445.763 kb on + strandat 445.764 kb on - strandat 445.764 kb on - strandat 445.764 kb on - strandat 445.796 kb on + strandat 445.817 kb on + strandat 445.818 kb on - strandat 445.818 kb on - strandat 445.849 kb on + strandat 445.849 kb on + strandat 445.849 kb on + strandat 445.862 kb on + strandat 445.862 kb on + strandat 445.980 kb on + strand, within IAI46_02095at 445.980 kb on + strand, within IAI46_02095at 445.981 kb on - strand, within IAI46_02095at 446.225 kb on - strand, within IAI46_02095at 446.238 kb on + strand, within IAI46_02095at 446.296 kb on + strand, within IAI46_02095at 446.296 kb on + strand, within IAI46_02095at 446.318 kb on + strand, within IAI46_02095at 446.482 kb on + strand, within IAI46_02095at 446.489 kb on - strand, within IAI46_02095at 446.489 kb on - strand, within IAI46_02095at 446.527 kb on + strand, within IAI46_02095at 446.527 kb on + strand, within IAI46_02095at 446.528 kb on - strand, within IAI46_02095at 446.528 kb on - strand, within IAI46_02095at 446.606 kb on + strand, within IAI46_02095at 446.607 kb on - strand, within IAI46_02095at 446.689 kb on + strand, within IAI46_02095

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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443,928 + IAI46_02080 0.74 -2.5
443,928 + IAI46_02080 0.74 -0.2
443,928 + IAI46_02080 0.74 +1.4
443,928 + IAI46_02080 0.74 +0.4
443,929 - IAI46_02080 0.74 -0.1
443,929 - IAI46_02080 0.74 -0.6
443,937 + IAI46_02080 0.75 +0.2
444,104 - +0.6
444,117 + -0.2
444,118 - +0.2
444,127 + -0.4
444,160 + +0.5
444,160 + -1.9
444,161 - -0.4
444,161 - -0.0
444,161 - -0.5
444,161 - +1.2
444,161 - +0.3
444,161 - -0.3
444,377 + IAI46_02085 0.32 -0.7
444,378 - IAI46_02085 0.32 +0.4
444,382 - IAI46_02085 0.32 -0.2
444,382 - IAI46_02085 0.32 +1.6
444,382 - IAI46_02085 0.32 +0.4
444,622 - IAI46_02085 0.63 -0.0
444,675 + IAI46_02085 0.70 +0.7
444,675 + IAI46_02085 0.70 +0.4
444,675 + IAI46_02085 0.70 -0.0
444,676 - IAI46_02085 0.70 +0.7
444,676 - IAI46_02085 0.70 +0.1
444,676 - IAI46_02085 0.70 +0.2
444,812 - IAI46_02085 0.87 -0.1
444,816 - IAI46_02085 0.87 +0.1
444,833 + IAI46_02085 0.90 -1.2
444,834 - IAI46_02085 0.90 +1.0
444,834 - IAI46_02085 0.90 -0.4
444,960 + -1.8
445,024 - IAI46_02090 0.13 +0.1
445,070 + IAI46_02090 0.18 +0.3
445,070 + IAI46_02090 0.18 -1.1
445,071 - IAI46_02090 0.18 -0.2
445,115 - IAI46_02090 0.23 +0.6
445,131 + IAI46_02090 0.25 -0.2
445,131 + IAI46_02090 0.25 +0.3
445,132 - IAI46_02090 0.25 -0.4
445,135 + IAI46_02090 0.26 -0.4
445,135 + IAI46_02090 0.26 -0.1
445,135 + IAI46_02090 0.26 -0.2
445,135 + IAI46_02090 0.26 -0.9
445,136 - IAI46_02090 0.26 -0.1
445,136 - IAI46_02090 0.26 +0.3
445,136 - IAI46_02090 0.26 +0.2
445,136 - IAI46_02090 0.26 -0.1
445,136 - IAI46_02090 0.26 +0.4
445,136 - IAI46_02090 0.26 -0.9
445,136 - IAI46_02090 0.26 -0.8
445,136 - IAI46_02090 0.26 -0.6
445,136 - IAI46_02090 0.26 +0.5
445,230 + IAI46_02090 0.37 -1.1
445,230 + IAI46_02090 0.37 +0.3
445,230 + IAI46_02090 0.37 -0.6
445,260 + IAI46_02090 0.40 -0.0
445,260 + IAI46_02090 0.40 +0.5
445,260 + IAI46_02090 0.40 -0.6
445,260 + IAI46_02090 0.40 +0.1
445,260 + IAI46_02090 0.40 +0.1
445,260 + IAI46_02090 0.40 +1.6
445,260 + IAI46_02090 0.40 +1.6
445,260 + IAI46_02090 0.40 -0.0
445,260 + IAI46_02090 0.40 -0.3
445,260 + IAI46_02090 0.40 +0.4
445,260 + IAI46_02090 0.40 +0.0
445,261 - IAI46_02090 0.40 -0.2
445,300 - IAI46_02090 0.45 +0.4
445,324 - IAI46_02090 0.48 -0.0
445,404 + IAI46_02090 0.57 +0.0
445,753 - +0.8
445,761 - -0.5
445,763 + +0.0
445,764 - +1.2
445,764 - +0.2
445,764 - +0.8
445,796 + +0.6
445,817 + +0.2
445,818 - -0.8
445,818 - -0.1
445,849 + +1.0
445,849 + +0.1
445,849 + +0.6
445,862 + +0.2
445,862 + +0.8
445,980 + IAI46_02095 0.20 +0.4
445,980 + IAI46_02095 0.20 +0.0
445,981 - IAI46_02095 0.20 +1.0
446,225 - IAI46_02095 0.42 +0.8
446,238 + IAI46_02095 0.43 +0.0
446,296 + IAI46_02095 0.49 +1.3
446,296 + IAI46_02095 0.49 -0.7
446,318 + IAI46_02095 0.51 -0.7
446,482 + IAI46_02095 0.66 +0.8
446,489 - IAI46_02095 0.66 -0.4
446,489 - IAI46_02095 0.66 -0.3
446,527 + IAI46_02095 0.70 +0.1
446,527 + IAI46_02095 0.70 +1.4
446,528 - IAI46_02095 0.70 +1.1
446,528 - IAI46_02095 0.70 +0.6
446,606 + IAI46_02095 0.77 +0.1
446,607 - IAI46_02095 0.77 -0.3
446,689 + IAI46_02095 0.85 +0.0

Or see this region's nucleotide sequence