Strain Fitness in Serratia liquefaciens MT49 around IAI46_02035

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02020 and IAI46_02025 overlap by 7 nucleotidesIAI46_02025 and IAI46_02030 overlap by 14 nucleotidesIAI46_02030 and IAI46_02035 are separated by 90 nucleotidesIAI46_02035 and IAI46_02040 are separated by 63 nucleotides IAI46_02020: IAI46_02020 - SCP2 domain-containing protein, at 433,480 to 434,001 _02020 IAI46_02025: IAI46_02025 - N-acetyltransferase, at 433,995 to 434,498 _02025 IAI46_02030: IAI46_02030 - GIY-YIG nuclease family protein, at 434,485 to 434,793 _02030 IAI46_02035: IAI46_02035 - putrescine-ornithine antiporter, at 434,884 to 436,200 _02035 IAI46_02040: IAI46_02040 - ornithine decarboxylase SpeF, at 436,264 to 438,426 _02040 Position (kb) 434 435 436 437Strain fitness (log2 ratio) -2 -1 0 1 2at 433.991 kb on + strandat 433.999 kb on + strandat 433.999 kb on + strandat 434.156 kb on - strand, within IAI46_02025at 434.156 kb on - strand, within IAI46_02025at 434.274 kb on + strand, within IAI46_02025at 434.274 kb on + strand, within IAI46_02025at 434.275 kb on - strand, within IAI46_02025at 434.307 kb on + strand, within IAI46_02025at 434.307 kb on + strand, within IAI46_02025at 434.308 kb on - strand, within IAI46_02025at 434.317 kb on + strand, within IAI46_02025at 434.317 kb on + strand, within IAI46_02025at 434.340 kb on + strand, within IAI46_02025at 434.340 kb on + strand, within IAI46_02025at 434.341 kb on - strand, within IAI46_02025at 434.341 kb on - strand, within IAI46_02025at 434.376 kb on + strand, within IAI46_02025at 434.515 kb on + strandat 434.515 kb on + strandat 434.516 kb on - strand, within IAI46_02030at 434.516 kb on - strand, within IAI46_02030at 434.599 kb on + strand, within IAI46_02030at 434.607 kb on + strand, within IAI46_02030at 434.608 kb on - strand, within IAI46_02030at 434.721 kb on + strand, within IAI46_02030at 434.722 kb on - strand, within IAI46_02030at 434.722 kb on - strand, within IAI46_02030at 434.722 kb on - strand, within IAI46_02030at 434.733 kb on - strand, within IAI46_02030at 434.733 kb on - strand, within IAI46_02030at 434.733 kb on - strand, within IAI46_02030at 434.762 kb on + strand, within IAI46_02030at 434.763 kb on - strandat 434.763 kb on - strandat 434.763 kb on - strandat 434.763 kb on - strandat 434.797 kb on + strandat 434.797 kb on + strandat 434.797 kb on + strandat 434.798 kb on - strandat 434.828 kb on + strandat 434.828 kb on + strandat 434.828 kb on + strandat 434.828 kb on + strandat 434.828 kb on + strandat 434.829 kb on - strandat 434.829 kb on - strandat 434.850 kb on + strandat 434.850 kb on + strandat 434.850 kb on + strandat 434.880 kb on - strandat 434.931 kb on - strandat 434.993 kb on + strandat 434.994 kb on - strandat 434.994 kb on - strandat 434.994 kb on - strandat 434.994 kb on - strandat 435.002 kb on + strandat 435.002 kb on + strandat 435.003 kb on - strandat 435.003 kb on - strandat 435.003 kb on - strandat 435.003 kb on - strandat 435.011 kb on + strandat 435.011 kb on + strandat 435.012 kb on - strandat 435.085 kb on - strand, within IAI46_02035at 435.113 kb on + strand, within IAI46_02035at 435.114 kb on - strand, within IAI46_02035at 435.114 kb on - strand, within IAI46_02035at 435.120 kb on + strand, within IAI46_02035at 435.123 kb on + strand, within IAI46_02035at 435.123 kb on + strand, within IAI46_02035at 435.123 kb on + strand, within IAI46_02035at 435.123 kb on + strand, within IAI46_02035at 435.124 kb on - strand, within IAI46_02035at 435.124 kb on - strand, within IAI46_02035at 435.124 kb on - strand, within IAI46_02035at 435.199 kb on + strand, within IAI46_02035at 435.307 kb on + strand, within IAI46_02035at 435.402 kb on + strand, within IAI46_02035at 435.403 kb on - strand, within IAI46_02035at 435.451 kb on - strand, within IAI46_02035at 435.458 kb on - strand, within IAI46_02035at 435.458 kb on - strand, within IAI46_02035at 435.460 kb on + strand, within IAI46_02035at 435.461 kb on - strand, within IAI46_02035at 435.461 kb on - strand, within IAI46_02035at 435.461 kb on - strand, within IAI46_02035at 435.461 kb on - strand, within IAI46_02035at 435.489 kb on + strand, within IAI46_02035at 435.491 kb on + strand, within IAI46_02035at 435.491 kb on + strand, within IAI46_02035at 435.491 kb on + strand, within IAI46_02035at 435.491 kb on + strand, within IAI46_02035at 435.492 kb on - strand, within IAI46_02035at 435.492 kb on - strand, within IAI46_02035at 435.540 kb on + strand, within IAI46_02035at 435.541 kb on - strand, within IAI46_02035at 435.541 kb on - strand, within IAI46_02035at 435.541 kb on - strand, within IAI46_02035at 435.541 kb on - strand, within IAI46_02035at 435.541 kb on - strand, within IAI46_02035at 435.675 kb on - strand, within IAI46_02035at 435.675 kb on - strand, within IAI46_02035at 435.828 kb on + strand, within IAI46_02035at 435.829 kb on - strand, within IAI46_02035at 435.930 kb on - strand, within IAI46_02035at 435.933 kb on + strand, within IAI46_02035at 435.935 kb on + strand, within IAI46_02035at 435.935 kb on + strand, within IAI46_02035at 435.936 kb on - strand, within IAI46_02035at 435.945 kb on + strand, within IAI46_02035at 435.946 kb on - strand, within IAI46_02035at 435.946 kb on - strand, within IAI46_02035at 435.972 kb on - strand, within IAI46_02035at 435.972 kb on - strand, within IAI46_02035at 435.980 kb on + strand, within IAI46_02035at 435.980 kb on + strand, within IAI46_02035at 435.981 kb on - strand, within IAI46_02035at 435.981 kb on - strand, within IAI46_02035at 436.080 kb on + strandat 436.081 kb on - strandat 436.119 kb on + strandat 436.119 kb on + strandat 436.119 kb on + strandat 436.119 kb on + strandat 436.119 kb on + strandat 436.120 kb on - strandat 436.217 kb on - strandat 436.240 kb on - strandat 436.242 kb on + strandat 436.266 kb on - strandat 436.270 kb on - strandat 436.281 kb on - strandat 436.322 kb on + strandat 436.323 kb on - strandat 436.363 kb on - strandat 436.388 kb on + strandat 436.389 kb on - strandat 436.432 kb on + strandat 436.449 kb on - strandat 436.454 kb on - strandat 436.454 kb on - strandat 436.454 kb on - strandat 436.603 kb on - strand, within IAI46_02040at 436.610 kb on + strand, within IAI46_02040at 436.620 kb on - strand, within IAI46_02040at 436.659 kb on - strand, within IAI46_02040at 436.668 kb on - strand, within IAI46_02040at 436.686 kb on + strand, within IAI46_02040at 436.687 kb on - strand, within IAI46_02040at 436.687 kb on - strand, within IAI46_02040at 436.688 kb on + strand, within IAI46_02040at 436.689 kb on - strand, within IAI46_02040at 436.714 kb on + strand, within IAI46_02040at 436.715 kb on - strand, within IAI46_02040at 436.840 kb on + strand, within IAI46_02040at 436.840 kb on + strand, within IAI46_02040at 436.840 kb on + strand, within IAI46_02040at 436.840 kb on + strand, within IAI46_02040at 436.841 kb on - strand, within IAI46_02040at 436.859 kb on + strand, within IAI46_02040at 436.859 kb on + strand, within IAI46_02040at 436.859 kb on + strand, within IAI46_02040at 436.860 kb on - strand, within IAI46_02040at 436.898 kb on + strand, within IAI46_02040at 436.899 kb on - strand, within IAI46_02040at 437.054 kb on + strand, within IAI46_02040at 437.055 kb on - strand, within IAI46_02040at 437.055 kb on - strand, within IAI46_02040at 437.055 kb on - strand, within IAI46_02040at 437.055 kb on - strand, within IAI46_02040at 437.131 kb on - strand, within IAI46_02040

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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433,991 + +0.5
433,999 + +0.6
433,999 + +0.9
434,156 - IAI46_02025 0.32 -0.4
434,156 - IAI46_02025 0.32 +0.3
434,274 + IAI46_02025 0.55 +0.5
434,274 + IAI46_02025 0.55 -0.6
434,275 - IAI46_02025 0.56 +0.5
434,307 + IAI46_02025 0.62 +0.3
434,307 + IAI46_02025 0.62 +0.7
434,308 - IAI46_02025 0.62 +0.4
434,317 + IAI46_02025 0.64 +0.2
434,317 + IAI46_02025 0.64 -0.7
434,340 + IAI46_02025 0.68 +0.8
434,340 + IAI46_02025 0.68 +0.5
434,341 - IAI46_02025 0.69 +0.1
434,341 - IAI46_02025 0.69 +0.7
434,376 + IAI46_02025 0.76 +1.1
434,515 + +0.2
434,515 + -0.2
434,516 - IAI46_02030 0.10 +0.2
434,516 - IAI46_02030 0.10 -0.2
434,599 + IAI46_02030 0.37 -1.2
434,607 + IAI46_02030 0.39 -0.4
434,608 - IAI46_02030 0.40 +0.2
434,721 + IAI46_02030 0.76 +0.2
434,722 - IAI46_02030 0.77 -0.4
434,722 - IAI46_02030 0.77 +0.6
434,722 - IAI46_02030 0.77 -0.8
434,733 - IAI46_02030 0.80 +0.2
434,733 - IAI46_02030 0.80 +1.1
434,733 - IAI46_02030 0.80 -0.0
434,762 + IAI46_02030 0.90 +1.5
434,763 - +0.1
434,763 - -0.5
434,763 - +0.8
434,763 - -0.2
434,797 + +0.5
434,797 + +0.3
434,797 + +0.3
434,798 - +0.6
434,828 + +0.5
434,828 + +0.9
434,828 + -1.3
434,828 + +0.3
434,828 + -1.5
434,829 - -0.5
434,829 - +0.2
434,850 + +0.5
434,850 + +0.0
434,850 + +0.8
434,880 - +0.1
434,931 - +0.8
434,993 + +0.7
434,994 - -0.3
434,994 - +1.0
434,994 - -0.1
434,994 - -0.0
435,002 + +0.5
435,002 + +0.0
435,003 - -0.7
435,003 - -0.5
435,003 - -0.3
435,003 - +1.1
435,011 + +0.2
435,011 + +0.2
435,012 - +0.2
435,085 - IAI46_02035 0.15 +0.6
435,113 + IAI46_02035 0.17 +0.4
435,114 - IAI46_02035 0.17 +0.5
435,114 - IAI46_02035 0.17 -0.5
435,120 + IAI46_02035 0.18 -0.2
435,123 + IAI46_02035 0.18 +0.4
435,123 + IAI46_02035 0.18 -0.0
435,123 + IAI46_02035 0.18 -0.6
435,123 + IAI46_02035 0.18 -0.2
435,124 - IAI46_02035 0.18 +0.7
435,124 - IAI46_02035 0.18 -0.2
435,124 - IAI46_02035 0.18 -1.9
435,199 + IAI46_02035 0.24 +0.7
435,307 + IAI46_02035 0.32 +0.5
435,402 + IAI46_02035 0.39 +0.1
435,403 - IAI46_02035 0.39 +0.6
435,451 - IAI46_02035 0.43 -0.1
435,458 - IAI46_02035 0.44 +0.2
435,458 - IAI46_02035 0.44 +0.2
435,460 + IAI46_02035 0.44 +0.3
435,461 - IAI46_02035 0.44 +0.8
435,461 - IAI46_02035 0.44 +0.2
435,461 - IAI46_02035 0.44 -0.9
435,461 - IAI46_02035 0.44 +0.1
435,489 + IAI46_02035 0.46 +0.1
435,491 + IAI46_02035 0.46 +0.4
435,491 + IAI46_02035 0.46 +0.2
435,491 + IAI46_02035 0.46 +0.2
435,491 + IAI46_02035 0.46 -0.7
435,492 - IAI46_02035 0.46 +0.3
435,492 - IAI46_02035 0.46 -0.3
435,540 + IAI46_02035 0.50 +0.7
435,541 - IAI46_02035 0.50 +0.0
435,541 - IAI46_02035 0.50 +0.2
435,541 - IAI46_02035 0.50 +0.5
435,541 - IAI46_02035 0.50 +0.1
435,541 - IAI46_02035 0.50 +0.7
435,675 - IAI46_02035 0.60 +0.4
435,675 - IAI46_02035 0.60 +0.5
435,828 + IAI46_02035 0.72 -0.3
435,829 - IAI46_02035 0.72 +1.2
435,930 - IAI46_02035 0.79 -0.7
435,933 + IAI46_02035 0.80 +0.5
435,935 + IAI46_02035 0.80 -0.7
435,935 + IAI46_02035 0.80 -1.1
435,936 - IAI46_02035 0.80 -0.3
435,945 + IAI46_02035 0.81 -0.2
435,946 - IAI46_02035 0.81 -0.1
435,946 - IAI46_02035 0.81 -0.7
435,972 - IAI46_02035 0.83 +0.2
435,972 - IAI46_02035 0.83 -0.1
435,980 + IAI46_02035 0.83 +0.5
435,980 + IAI46_02035 0.83 -0.0
435,981 - IAI46_02035 0.83 +0.1
435,981 - IAI46_02035 0.83 +0.4
436,080 + -0.5
436,081 - +0.4
436,119 + +0.5
436,119 + +0.3
436,119 + -0.2
436,119 + -0.1
436,119 + +1.0
436,120 - +0.1
436,217 - +0.1
436,240 - +0.7
436,242 + -0.0
436,266 - -1.0
436,270 - -0.2
436,281 - +0.4
436,322 + -0.5
436,323 - -1.4
436,363 - +0.1
436,388 + -0.6
436,389 - -0.2
436,432 + +0.3
436,449 - +0.3
436,454 - -0.7
436,454 - -0.6
436,454 - +1.8
436,603 - IAI46_02040 0.16 -0.6
436,610 + IAI46_02040 0.16 -0.1
436,620 - IAI46_02040 0.16 +0.1
436,659 - IAI46_02040 0.18 -0.0
436,668 - IAI46_02040 0.19 -0.1
436,686 + IAI46_02040 0.20 +0.1
436,687 - IAI46_02040 0.20 +0.5
436,687 - IAI46_02040 0.20 +0.5
436,688 + IAI46_02040 0.20 -0.6
436,689 - IAI46_02040 0.20 -0.3
436,714 + IAI46_02040 0.21 -0.0
436,715 - IAI46_02040 0.21 -0.2
436,840 + IAI46_02040 0.27 -0.0
436,840 + IAI46_02040 0.27 -0.4
436,840 + IAI46_02040 0.27 +0.5
436,840 + IAI46_02040 0.27 -0.2
436,841 - IAI46_02040 0.27 -0.2
436,859 + IAI46_02040 0.28 +0.5
436,859 + IAI46_02040 0.28 +0.7
436,859 + IAI46_02040 0.28 -0.3
436,860 - IAI46_02040 0.28 -0.8
436,898 + IAI46_02040 0.29 -0.1
436,899 - IAI46_02040 0.29 -0.2
437,054 + IAI46_02040 0.37 +0.4
437,055 - IAI46_02040 0.37 +1.1
437,055 - IAI46_02040 0.37 -0.3
437,055 - IAI46_02040 0.37 +0.4
437,055 - IAI46_02040 0.37 +0.5
437,131 - IAI46_02040 0.40 -1.3

Or see this region's nucleotide sequence