Strain Fitness in Serratia liquefaciens MT49 around IAI46_00290

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00285 and IAI46_00290 are separated by 29 nucleotidesIAI46_00290 and IAI46_00295 overlap by 23 nucleotides IAI46_00285: IAI46_00285 - D-xylose ABC transporter substrate-binding protein, at 66,670 to 67,665 _00285 IAI46_00290: IAI46_00290 - xylose ABC transporter ATP-binding protein, at 67,695 to 69,236 _00290 IAI46_00295: IAI46_00295 - sugar ABC transporter permease, at 69,214 to 70,398 _00295 Position (kb) 67 68 69 70Strain fitness (log2 ratio) -2 -1 0 1 2at 66.804 kb on + strand, within IAI46_00285at 66.897 kb on + strand, within IAI46_00285at 66.898 kb on - strand, within IAI46_00285at 66.930 kb on + strand, within IAI46_00285at 66.937 kb on + strand, within IAI46_00285at 66.938 kb on - strand, within IAI46_00285at 66.938 kb on - strand, within IAI46_00285at 66.939 kb on + strand, within IAI46_00285at 66.990 kb on + strand, within IAI46_00285at 66.991 kb on - strand, within IAI46_00285at 66.991 kb on - strand, within IAI46_00285at 67.003 kb on + strand, within IAI46_00285at 67.004 kb on - strand, within IAI46_00285at 67.004 kb on - strand, within IAI46_00285at 67.040 kb on - strand, within IAI46_00285at 67.040 kb on - strand, within IAI46_00285at 67.054 kb on - strand, within IAI46_00285at 67.114 kb on + strand, within IAI46_00285at 67.115 kb on - strand, within IAI46_00285at 67.264 kb on - strand, within IAI46_00285at 67.296 kb on + strand, within IAI46_00285at 67.296 kb on + strand, within IAI46_00285at 67.296 kb on + strand, within IAI46_00285at 67.296 kb on + strand, within IAI46_00285at 67.296 kb on + strand, within IAI46_00285at 67.297 kb on - strand, within IAI46_00285at 67.324 kb on - strand, within IAI46_00285at 67.429 kb on - strand, within IAI46_00285at 67.429 kb on - strand, within IAI46_00285at 67.460 kb on - strand, within IAI46_00285at 67.460 kb on - strand, within IAI46_00285at 67.460 kb on - strand, within IAI46_00285at 67.460 kb on - strand, within IAI46_00285at 67.460 kb on - strand, within IAI46_00285at 67.461 kb on + strand, within IAI46_00285at 67.462 kb on - strand, within IAI46_00285at 67.462 kb on - strand, within IAI46_00285at 67.547 kb on + strand, within IAI46_00285at 67.547 kb on + strand, within IAI46_00285at 67.547 kb on + strand, within IAI46_00285at 67.548 kb on - strand, within IAI46_00285at 67.580 kb on + strandat 67.602 kb on + strandat 67.623 kb on + strandat 67.624 kb on - strandat 67.624 kb on - strandat 67.624 kb on - strandat 67.627 kb on - strandat 67.627 kb on - strandat 67.694 kb on - strandat 67.706 kb on - strandat 67.745 kb on + strandat 67.757 kb on + strandat 67.790 kb on - strandat 67.790 kb on - strandat 67.790 kb on - strandat 67.792 kb on + strandat 67.854 kb on + strand, within IAI46_00290at 67.854 kb on + strand, within IAI46_00290at 67.870 kb on - strand, within IAI46_00290at 67.885 kb on - strand, within IAI46_00290at 67.885 kb on - strand, within IAI46_00290at 67.885 kb on - strand, within IAI46_00290at 67.885 kb on - strand, within IAI46_00290at 67.901 kb on - strand, within IAI46_00290at 67.940 kb on + strand, within IAI46_00290at 67.940 kb on + strand, within IAI46_00290at 68.040 kb on + strand, within IAI46_00290at 68.041 kb on - strand, within IAI46_00290at 68.053 kb on - strand, within IAI46_00290at 68.069 kb on + strand, within IAI46_00290at 68.069 kb on + strand, within IAI46_00290at 68.069 kb on + strand, within IAI46_00290at 68.069 kb on + strand, within IAI46_00290at 68.069 kb on + strand, within IAI46_00290at 68.069 kb on + strand, within IAI46_00290at 68.070 kb on - strand, within IAI46_00290at 68.070 kb on - strand, within IAI46_00290at 68.105 kb on + strand, within IAI46_00290at 68.189 kb on - strand, within IAI46_00290at 68.189 kb on - strand, within IAI46_00290at 68.201 kb on + strand, within IAI46_00290at 68.201 kb on + strand, within IAI46_00290at 68.279 kb on + strand, within IAI46_00290at 68.279 kb on + strand, within IAI46_00290at 68.283 kb on + strand, within IAI46_00290at 68.284 kb on - strand, within IAI46_00290at 68.284 kb on - strand, within IAI46_00290at 68.284 kb on - strand, within IAI46_00290at 68.434 kb on - strand, within IAI46_00290at 68.434 kb on - strand, within IAI46_00290at 68.455 kb on + strand, within IAI46_00290at 68.455 kb on + strand, within IAI46_00290at 68.455 kb on + strand, within IAI46_00290at 68.456 kb on - strand, within IAI46_00290at 68.456 kb on - strand, within IAI46_00290at 68.456 kb on - strand, within IAI46_00290at 68.560 kb on + strand, within IAI46_00290at 68.625 kb on + strand, within IAI46_00290at 68.651 kb on + strand, within IAI46_00290at 68.651 kb on + strand, within IAI46_00290at 68.675 kb on + strand, within IAI46_00290at 68.704 kb on - strand, within IAI46_00290at 68.704 kb on - strand, within IAI46_00290at 68.774 kb on + strand, within IAI46_00290at 68.774 kb on + strand, within IAI46_00290at 68.774 kb on + strand, within IAI46_00290at 68.775 kb on - strand, within IAI46_00290at 68.775 kb on - strand, within IAI46_00290at 69.034 kb on + strand, within IAI46_00290at 69.050 kb on - strand, within IAI46_00290at 69.308 kb on + strandat 69.308 kb on + strandat 69.324 kb on - strandat 69.333 kb on + strand, within IAI46_00295at 69.333 kb on + strand, within IAI46_00295at 69.333 kb on + strand, within IAI46_00295at 69.333 kb on + strand, within IAI46_00295at 69.334 kb on - strand, within IAI46_00295at 69.334 kb on - strand, within IAI46_00295at 69.345 kb on + strand, within IAI46_00295at 69.352 kb on - strand, within IAI46_00295at 69.367 kb on + strand, within IAI46_00295at 69.368 kb on - strand, within IAI46_00295at 69.381 kb on + strand, within IAI46_00295at 69.381 kb on + strand, within IAI46_00295at 69.381 kb on + strand, within IAI46_00295at 69.381 kb on + strand, within IAI46_00295at 69.382 kb on - strand, within IAI46_00295at 69.382 kb on - strand, within IAI46_00295at 69.384 kb on + strand, within IAI46_00295at 69.384 kb on + strand, within IAI46_00295at 69.384 kb on + strand, within IAI46_00295at 69.743 kb on - strand, within IAI46_00295at 69.743 kb on - strand, within IAI46_00295at 69.830 kb on + strand, within IAI46_00295at 69.830 kb on + strand, within IAI46_00295at 69.830 kb on + strand, within IAI46_00295at 69.900 kb on - strand, within IAI46_00295at 69.942 kb on + strand, within IAI46_00295at 69.942 kb on + strand, within IAI46_00295at 69.984 kb on - strand, within IAI46_00295at 69.987 kb on + strand, within IAI46_00295at 69.987 kb on + strand, within IAI46_00295at 69.987 kb on + strand, within IAI46_00295at 69.988 kb on - strand, within IAI46_00295at 69.988 kb on - strand, within IAI46_00295at 69.988 kb on - strand, within IAI46_00295at 70.021 kb on + strand, within IAI46_00295at 70.038 kb on + strand, within IAI46_00295at 70.039 kb on - strand, within IAI46_00295at 70.039 kb on - strand, within IAI46_00295at 70.177 kb on - strand, within IAI46_00295

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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66,804 + IAI46_00285 0.13 -0.1
66,897 + IAI46_00285 0.23 +0.0
66,898 - IAI46_00285 0.23 +1.0
66,930 + IAI46_00285 0.26 -0.4
66,937 + IAI46_00285 0.27 -1.2
66,938 - IAI46_00285 0.27 -0.2
66,938 - IAI46_00285 0.27 -0.3
66,939 + IAI46_00285 0.27 -0.1
66,990 + IAI46_00285 0.32 +0.4
66,991 - IAI46_00285 0.32 +0.1
66,991 - IAI46_00285 0.32 -0.6
67,003 + IAI46_00285 0.33 +0.6
67,004 - IAI46_00285 0.34 -0.2
67,004 - IAI46_00285 0.34 +0.3
67,040 - IAI46_00285 0.37 -2.2
67,040 - IAI46_00285 0.37 -0.2
67,054 - IAI46_00285 0.39 +0.4
67,114 + IAI46_00285 0.45 +0.3
67,115 - IAI46_00285 0.45 +0.1
67,264 - IAI46_00285 0.60 +0.1
67,296 + IAI46_00285 0.63 +0.1
67,296 + IAI46_00285 0.63 +0.5
67,296 + IAI46_00285 0.63 +1.9
67,296 + IAI46_00285 0.63 +0.2
67,296 + IAI46_00285 0.63 +0.1
67,297 - IAI46_00285 0.63 -0.6
67,324 - IAI46_00285 0.66 +0.8
67,429 - IAI46_00285 0.76 +0.1
67,429 - IAI46_00285 0.76 -0.4
67,460 - IAI46_00285 0.79 +2.1
67,460 - IAI46_00285 0.79 -0.5
67,460 - IAI46_00285 0.79 +1.1
67,460 - IAI46_00285 0.79 +1.2
67,460 - IAI46_00285 0.79 +0.2
67,461 + IAI46_00285 0.79 +0.4
67,462 - IAI46_00285 0.80 -2.5
67,462 - IAI46_00285 0.80 +0.4
67,547 + IAI46_00285 0.88 +1.4
67,547 + IAI46_00285 0.88 +0.4
67,547 + IAI46_00285 0.88 -0.8
67,548 - IAI46_00285 0.88 +0.3
67,580 + -0.1
67,602 + -0.5
67,623 + +0.4
67,624 - -1.8
67,624 - +0.1
67,624 - -0.2
67,627 - -0.4
67,627 - -0.9
67,694 - +0.3
67,706 - -0.6
67,745 + +0.2
67,757 + -0.3
67,790 - +0.3
67,790 - -0.4
67,790 - +0.2
67,792 + -0.8
67,854 + IAI46_00290 0.10 +0.0
67,854 + IAI46_00290 0.10 +0.2
67,870 - IAI46_00290 0.11 +0.1
67,885 - IAI46_00290 0.12 +0.3
67,885 - IAI46_00290 0.12 +0.4
67,885 - IAI46_00290 0.12 +0.7
67,885 - IAI46_00290 0.12 -0.4
67,901 - IAI46_00290 0.13 -0.0
67,940 + IAI46_00290 0.16 -0.5
67,940 + IAI46_00290 0.16 +1.2
68,040 + IAI46_00290 0.22 +0.1
68,041 - IAI46_00290 0.22 +0.0
68,053 - IAI46_00290 0.23 +0.6
68,069 + IAI46_00290 0.24 -0.5
68,069 + IAI46_00290 0.24 +0.1
68,069 + IAI46_00290 0.24 -0.4
68,069 + IAI46_00290 0.24 -0.4
68,069 + IAI46_00290 0.24 +0.6
68,069 + IAI46_00290 0.24 +0.2
68,070 - IAI46_00290 0.24 -0.6
68,070 - IAI46_00290 0.24 +0.2
68,105 + IAI46_00290 0.27 +0.5
68,189 - IAI46_00290 0.32 +0.3
68,189 - IAI46_00290 0.32 -0.3
68,201 + IAI46_00290 0.33 +0.6
68,201 + IAI46_00290 0.33 -1.2
68,279 + IAI46_00290 0.38 +0.6
68,279 + IAI46_00290 0.38 +0.3
68,283 + IAI46_00290 0.38 +0.5
68,284 - IAI46_00290 0.38 +0.2
68,284 - IAI46_00290 0.38 +0.7
68,284 - IAI46_00290 0.38 -0.2
68,434 - IAI46_00290 0.48 -1.5
68,434 - IAI46_00290 0.48 +0.9
68,455 + IAI46_00290 0.49 +0.6
68,455 + IAI46_00290 0.49 +0.2
68,455 + IAI46_00290 0.49 -0.2
68,456 - IAI46_00290 0.49 -0.8
68,456 - IAI46_00290 0.49 -0.1
68,456 - IAI46_00290 0.49 -0.7
68,560 + IAI46_00290 0.56 -0.0
68,625 + IAI46_00290 0.60 +0.1
68,651 + IAI46_00290 0.62 +0.6
68,651 + IAI46_00290 0.62 +0.8
68,675 + IAI46_00290 0.64 +0.3
68,704 - IAI46_00290 0.65 -0.1
68,704 - IAI46_00290 0.65 +0.3
68,774 + IAI46_00290 0.70 -0.4
68,774 + IAI46_00290 0.70 +0.2
68,774 + IAI46_00290 0.70 -0.0
68,775 - IAI46_00290 0.70 +1.2
68,775 - IAI46_00290 0.70 -0.0
69,034 + IAI46_00290 0.87 +0.8
69,050 - IAI46_00290 0.88 -0.4
69,308 + +0.4
69,308 + +0.3
69,324 - -0.3
69,333 + IAI46_00295 0.10 +0.7
69,333 + IAI46_00295 0.10 -1.3
69,333 + IAI46_00295 0.10 -0.2
69,333 + IAI46_00295 0.10 -0.3
69,334 - IAI46_00295 0.10 -0.3
69,334 - IAI46_00295 0.10 -0.2
69,345 + IAI46_00295 0.11 -0.8
69,352 - IAI46_00295 0.12 +0.7
69,367 + IAI46_00295 0.13 -0.4
69,368 - IAI46_00295 0.13 -0.4
69,381 + IAI46_00295 0.14 +0.0
69,381 + IAI46_00295 0.14 -0.4
69,381 + IAI46_00295 0.14 +0.6
69,381 + IAI46_00295 0.14 +0.2
69,382 - IAI46_00295 0.14 +0.5
69,382 - IAI46_00295 0.14 -0.3
69,384 + IAI46_00295 0.14 +0.5
69,384 + IAI46_00295 0.14 +2.2
69,384 + IAI46_00295 0.14 +0.1
69,743 - IAI46_00295 0.45 +0.0
69,743 - IAI46_00295 0.45 +0.1
69,830 + IAI46_00295 0.52 +0.2
69,830 + IAI46_00295 0.52 -0.1
69,830 + IAI46_00295 0.52 +0.3
69,900 - IAI46_00295 0.58 +0.1
69,942 + IAI46_00295 0.61 -0.2
69,942 + IAI46_00295 0.61 -1.0
69,984 - IAI46_00295 0.65 +0.4
69,987 + IAI46_00295 0.65 +0.5
69,987 + IAI46_00295 0.65 -0.6
69,987 + IAI46_00295 0.65 -0.1
69,988 - IAI46_00295 0.65 -1.8
69,988 - IAI46_00295 0.65 +0.7
69,988 - IAI46_00295 0.65 -0.2
70,021 + IAI46_00295 0.68 -0.1
70,038 + IAI46_00295 0.70 -0.2
70,039 - IAI46_00295 0.70 +0.3
70,039 - IAI46_00295 0.70 +0.5
70,177 - IAI46_00295 0.81 +0.1

Or see this region's nucleotide sequence