Strain Fitness in Serratia liquefaciens MT49 around IAI46_00215

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00210 and IAI46_00215 are separated by 12 nucleotidesIAI46_00215 and IAI46_00220 overlap by 4 nucleotidesIAI46_00220 and IAI46_00225 overlap by 1 nucleotides IAI46_00210: IAI46_00210 - formate dehydrogenase-N subunit alpha, at 47,104 to 50,151 _00210 IAI46_00215: IAI46_00215 - formate dehydrogenase subunit beta, at 50,164 to 51,063 _00215 IAI46_00220: IAI46_00220 - formate dehydrogenase cytochrome b556 subunit, at 51,060 to 51,695 _00220 IAI46_00225: IAI46_00225 - formate dehydrogenase accessory protein FdhE, at 51,695 to 52,624 _00225 Position (kb) 50 51 52Strain fitness (log2 ratio) -1 0 1 2at 49.327 kb on - strand, within IAI46_00210at 49.392 kb on + strand, within IAI46_00210at 49.392 kb on + strand, within IAI46_00210at 49.438 kb on + strand, within IAI46_00210at 49.439 kb on - strand, within IAI46_00210at 49.620 kb on + strand, within IAI46_00210at 49.651 kb on + strand, within IAI46_00210at 49.651 kb on + strand, within IAI46_00210at 49.786 kb on + strand, within IAI46_00210at 49.787 kb on - strand, within IAI46_00210at 49.787 kb on - strand, within IAI46_00210at 49.787 kb on - strand, within IAI46_00210at 49.787 kb on - strand, within IAI46_00210at 49.811 kb on - strand, within IAI46_00210at 49.940 kb on - strandat 49.940 kb on - strandat 49.940 kb on - strandat 49.940 kb on - strandat 49.940 kb on - strandat 50.010 kb on + strandat 50.035 kb on + strandat 50.163 kb on + strandat 50.163 kb on + strandat 50.164 kb on - strandat 50.164 kb on - strandat 50.193 kb on + strandat 50.359 kb on + strand, within IAI46_00215at 50.359 kb on + strand, within IAI46_00215at 50.525 kb on - strand, within IAI46_00215at 50.563 kb on - strand, within IAI46_00215at 50.575 kb on + strand, within IAI46_00215at 50.635 kb on + strand, within IAI46_00215at 50.635 kb on + strand, within IAI46_00215at 50.643 kb on + strand, within IAI46_00215at 50.643 kb on + strand, within IAI46_00215at 50.643 kb on + strand, within IAI46_00215at 50.644 kb on - strand, within IAI46_00215at 50.644 kb on - strand, within IAI46_00215at 50.786 kb on - strand, within IAI46_00215at 50.804 kb on - strand, within IAI46_00215at 50.835 kb on + strand, within IAI46_00215at 50.835 kb on + strand, within IAI46_00215at 50.835 kb on + strand, within IAI46_00215at 50.835 kb on + strand, within IAI46_00215at 50.835 kb on + strand, within IAI46_00215at 50.835 kb on + strand, within IAI46_00215at 50.836 kb on - strand, within IAI46_00215at 50.836 kb on - strand, within IAI46_00215at 50.836 kb on - strand, within IAI46_00215at 50.839 kb on + strand, within IAI46_00215at 50.839 kb on + strand, within IAI46_00215at 50.839 kb on + strand, within IAI46_00215at 50.839 kb on + strand, within IAI46_00215at 50.839 kb on + strand, within IAI46_00215at 50.839 kb on + strand, within IAI46_00215at 50.839 kb on + strand, within IAI46_00215at 50.840 kb on - strand, within IAI46_00215at 50.840 kb on - strand, within IAI46_00215at 50.840 kb on - strand, within IAI46_00215at 50.840 kb on - strand, within IAI46_00215at 50.840 kb on - strand, within IAI46_00215at 50.872 kb on + strand, within IAI46_00215at 50.872 kb on + strand, within IAI46_00215at 50.873 kb on - strand, within IAI46_00215at 50.982 kb on - strandat 50.982 kb on - strandat 50.989 kb on + strandat 50.989 kb on + strandat 51.077 kb on + strandat 51.248 kb on + strand, within IAI46_00220at 51.249 kb on - strand, within IAI46_00220at 51.249 kb on - strand, within IAI46_00220at 51.293 kb on + strand, within IAI46_00220at 51.293 kb on + strand, within IAI46_00220at 51.293 kb on + strand, within IAI46_00220at 51.293 kb on + strand, within IAI46_00220at 51.294 kb on - strand, within IAI46_00220at 51.338 kb on + strand, within IAI46_00220at 51.339 kb on - strand, within IAI46_00220at 51.339 kb on - strand, within IAI46_00220at 51.380 kb on + strand, within IAI46_00220at 51.465 kb on + strand, within IAI46_00220at 51.465 kb on + strand, within IAI46_00220at 51.551 kb on + strand, within IAI46_00220at 51.551 kb on + strand, within IAI46_00220at 51.551 kb on + strand, within IAI46_00220at 51.551 kb on + strand, within IAI46_00220at 51.551 kb on + strand, within IAI46_00220at 51.564 kb on + strand, within IAI46_00220at 51.565 kb on - strand, within IAI46_00220at 51.565 kb on - strand, within IAI46_00220at 51.565 kb on - strand, within IAI46_00220at 51.581 kb on - strand, within IAI46_00220at 51.581 kb on - strand, within IAI46_00220at 51.716 kb on - strandat 51.716 kb on - strandat 51.726 kb on + strandat 51.827 kb on - strand, within IAI46_00225at 51.827 kb on - strand, within IAI46_00225at 51.857 kb on + strand, within IAI46_00225at 51.858 kb on - strand, within IAI46_00225at 51.932 kb on - strand, within IAI46_00225at 51.932 kb on - strand, within IAI46_00225

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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49,327 - IAI46_00210 0.73 +0.5
49,392 + IAI46_00210 0.75 +1.9
49,392 + IAI46_00210 0.75 +1.1
49,438 + IAI46_00210 0.77 +0.3
49,439 - IAI46_00210 0.77 +0.3
49,620 + IAI46_00210 0.83 -0.5
49,651 + IAI46_00210 0.84 +0.7
49,651 + IAI46_00210 0.84 +0.5
49,786 + IAI46_00210 0.88 +1.5
49,787 - IAI46_00210 0.88 +0.2
49,787 - IAI46_00210 0.88 -0.4
49,787 - IAI46_00210 0.88 +0.2
49,787 - IAI46_00210 0.88 +0.6
49,811 - IAI46_00210 0.89 -0.2
49,940 - +0.2
49,940 - -0.1
49,940 - -0.4
49,940 - +1.1
49,940 - +0.3
50,010 + +1.0
50,035 + +0.3
50,163 + -0.0
50,163 + +0.2
50,164 - -0.2
50,164 - +0.1
50,193 + -0.1
50,359 + IAI46_00215 0.22 +0.9
50,359 + IAI46_00215 0.22 +0.2
50,525 - IAI46_00215 0.40 +0.2
50,563 - IAI46_00215 0.44 +0.8
50,575 + IAI46_00215 0.46 +0.2
50,635 + IAI46_00215 0.52 +0.1
50,635 + IAI46_00215 0.52 +0.6
50,643 + IAI46_00215 0.53 +0.5
50,643 + IAI46_00215 0.53 -0.1
50,643 + IAI46_00215 0.53 +0.0
50,644 - IAI46_00215 0.53 +0.3
50,644 - IAI46_00215 0.53 -0.1
50,786 - IAI46_00215 0.69 +0.0
50,804 - IAI46_00215 0.71 +0.6
50,835 + IAI46_00215 0.75 -0.8
50,835 + IAI46_00215 0.75 +0.1
50,835 + IAI46_00215 0.75 -1.2
50,835 + IAI46_00215 0.75 -0.7
50,835 + IAI46_00215 0.75 -1.0
50,835 + IAI46_00215 0.75 +1.5
50,836 - IAI46_00215 0.75 -0.3
50,836 - IAI46_00215 0.75 -0.8
50,836 - IAI46_00215 0.75 +0.9
50,839 + IAI46_00215 0.75 -0.3
50,839 + IAI46_00215 0.75 +0.3
50,839 + IAI46_00215 0.75 -0.8
50,839 + IAI46_00215 0.75 +0.2
50,839 + IAI46_00215 0.75 +0.4
50,839 + IAI46_00215 0.75 +0.5
50,839 + IAI46_00215 0.75 -0.1
50,840 - IAI46_00215 0.75 +0.5
50,840 - IAI46_00215 0.75 -0.9
50,840 - IAI46_00215 0.75 +0.7
50,840 - IAI46_00215 0.75 -0.0
50,840 - IAI46_00215 0.75 +0.3
50,872 + IAI46_00215 0.79 -0.4
50,872 + IAI46_00215 0.79 -0.3
50,873 - IAI46_00215 0.79 +0.4
50,982 - +0.1
50,982 - +0.5
50,989 + +0.2
50,989 + +0.3
51,077 + +0.3
51,248 + IAI46_00220 0.30 -0.2
51,249 - IAI46_00220 0.30 -0.1
51,249 - IAI46_00220 0.30 -0.6
51,293 + IAI46_00220 0.37 -0.1
51,293 + IAI46_00220 0.37 +0.4
51,293 + IAI46_00220 0.37 -0.3
51,293 + IAI46_00220 0.37 +0.3
51,294 - IAI46_00220 0.37 +0.2
51,338 + IAI46_00220 0.44 -1.1
51,339 - IAI46_00220 0.44 +0.6
51,339 - IAI46_00220 0.44 +0.1
51,380 + IAI46_00220 0.50 +0.8
51,465 + IAI46_00220 0.64 +0.2
51,465 + IAI46_00220 0.64 -0.1
51,551 + IAI46_00220 0.77 -0.7
51,551 + IAI46_00220 0.77 +0.1
51,551 + IAI46_00220 0.77 +0.5
51,551 + IAI46_00220 0.77 -0.4
51,551 + IAI46_00220 0.77 +0.2
51,564 + IAI46_00220 0.79 -1.6
51,565 - IAI46_00220 0.79 -0.1
51,565 - IAI46_00220 0.79 +0.8
51,565 - IAI46_00220 0.79 -0.5
51,581 - IAI46_00220 0.82 +0.0
51,581 - IAI46_00220 0.82 +0.2
51,716 - +0.0
51,716 - +0.6
51,726 + -0.0
51,827 - IAI46_00225 0.14 +0.1
51,827 - IAI46_00225 0.14 +0.3
51,857 + IAI46_00225 0.17 -0.8
51,858 - IAI46_00225 0.18 -1.3
51,932 - IAI46_00225 0.25 -0.5
51,932 - IAI46_00225 0.25 +0.4

Or see this region's nucleotide sequence