Strain Fitness in Pseudomonas simiae WCS417 around PS417_21340

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21335 and PS417_21340 are separated by 32 nucleotidesPS417_21340 and PS417_21345 are separated by 269 nucleotidesPS417_21345 and PS417_21350 are separated by 190 nucleotides PS417_21335: PS417_21335 - sugar ABC transporter substrate-binding protein, at 4,637,414 to 4,638,394 _21335 PS417_21340: PS417_21340 - short-chain dehydrogenase, at 4,638,427 to 4,639,248 _21340 PS417_21345: PS417_21345 - GNAT family acetyltransferase, at 4,639,518 to 4,639,997 _21345 PS417_21350: PS417_21350 - hypothetical protein, at 4,640,188 to 4,640,520 _21350 Position (kb) 4638 4639 4640Strain fitness (log2 ratio) -2 -1 0 1at 4637.586 kb on + strandat 4637.925 kb on + strandat 4637.925 kb on + strand, within PS417_21335at 4637.925 kb on + strand, within PS417_21335at 4637.925 kb on + strand, within PS417_21335at 4637.926 kb on - strand, within PS417_21335at 4637.926 kb on - strand, within PS417_21335at 4637.926 kb on - strand, within PS417_21335at 4637.926 kb on - strand, within PS417_21335at 4638.018 kb on + strand, within PS417_21335at 4638.377 kb on + strandat 4638.428 kb on + strandat 4638.437 kb on + strandat 4638.642 kb on - strand, within PS417_21340at 4638.943 kb on + strand, within PS417_21340at 4638.944 kb on - strand, within PS417_21340at 4638.944 kb on - strand, within PS417_21340at 4638.944 kb on - strand, within PS417_21340at 4638.944 kb on - strand, within PS417_21340at 4638.944 kb on - strand, within PS417_21340at 4639.028 kb on + strand, within PS417_21340at 4639.029 kb on - strand, within PS417_21340at 4639.202 kb on + strandat 4639.202 kb on + strandat 4639.203 kb on - strandat 4639.295 kb on + strandat 4639.298 kb on - strandat 4639.298 kb on - strandat 4639.324 kb on - strandat 4639.327 kb on + strandat 4639.345 kb on - strandat 4639.366 kb on - strandat 4639.737 kb on - strand, within PS417_21345at 4639.738 kb on + strand, within PS417_21345at 4639.738 kb on + strand, within PS417_21345at 4639.738 kb on + strand, within PS417_21345at 4639.784 kb on - strand, within PS417_21345at 4639.922 kb on - strand, within PS417_21345at 4640.028 kb on + strandat 4640.028 kb on + strandat 4640.029 kb on - strandat 4640.029 kb on - strandat 4640.029 kb on - strandat 4640.029 kb on - strandat 4640.029 kb on - strandat 4640.029 kb on - strandat 4640.029 kb on - strandat 4640.029 kb on - strandat 4640.029 kb on - strandat 4640.029 kb on - strandat 4640.031 kb on + strandat 4640.031 kb on + strandat 4640.031 kb on + strandat 4640.031 kb on + strandat 4640.151 kb on + strandat 4640.154 kb on + strandat 4640.154 kb on + strandat 4640.155 kb on - strandat 4640.155 kb on - strandat 4640.158 kb on + strandat 4640.159 kb on - strandat 4640.167 kb on + strandat 4640.174 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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4,637,586 + +0.1
4,637,925 + -0.5
4,637,925 + PS417_21335 0.52 -0.1
4,637,925 + PS417_21335 0.52 -0.9
4,637,925 + PS417_21335 0.52 -1.7
4,637,926 - PS417_21335 0.52 -1.0
4,637,926 - PS417_21335 0.52 -1.2
4,637,926 - PS417_21335 0.52 -1.5
4,637,926 - PS417_21335 0.52 -1.5
4,638,018 + PS417_21335 0.62 -0.4
4,638,377 + -1.2
4,638,428 + -0.9
4,638,437 + -0.4
4,638,642 - PS417_21340 0.26 +0.9
4,638,943 + PS417_21340 0.63 -0.2
4,638,944 - PS417_21340 0.63 -0.5
4,638,944 - PS417_21340 0.63 -1.4
4,638,944 - PS417_21340 0.63 -2.7
4,638,944 - PS417_21340 0.63 -1.0
4,638,944 - PS417_21340 0.63 -0.5
4,639,028 + PS417_21340 0.73 -1.5
4,639,029 - PS417_21340 0.73 -0.5
4,639,202 + +1.1
4,639,202 + -1.3
4,639,203 - +0.6
4,639,295 + -0.4
4,639,298 - -0.4
4,639,298 - -0.6
4,639,324 - +0.7
4,639,327 + -0.4
4,639,345 - +1.2
4,639,366 - +0.4
4,639,737 - PS417_21345 0.46 +0.0
4,639,738 + PS417_21345 0.46 +0.1
4,639,738 + PS417_21345 0.46 +0.3
4,639,738 + PS417_21345 0.46 -0.1
4,639,784 - PS417_21345 0.55 +0.7
4,639,922 - PS417_21345 0.84 +1.7
4,640,028 + +0.4
4,640,028 + -0.9
4,640,029 - +1.5
4,640,029 - -0.3
4,640,029 - +0.4
4,640,029 - -0.3
4,640,029 - +0.8
4,640,029 - -0.1
4,640,029 - +0.2
4,640,029 - +0.3
4,640,029 - +0.3
4,640,029 - +0.6
4,640,031 + +0.1
4,640,031 + +0.0
4,640,031 + -0.6
4,640,031 + +0.2
4,640,151 + -0.4
4,640,154 + +0.3
4,640,154 + -0.4
4,640,155 - +0.2
4,640,155 - +0.1
4,640,158 + +0.4
4,640,159 - +0.7
4,640,167 + +1.0
4,640,174 - -1.1

Or see this region's nucleotide sequence