Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21335 and PS417_21340 are separated by 32 nucleotides PS417_21340 and PS417_21345 are separated by 269 nucleotides PS417_21345 and PS417_21350 are separated by 190 nucleotides
PS417_21335: PS417_21335 - sugar ABC transporter substrate-binding protein, at 4,637,414 to 4,638,394
_21335
PS417_21340: PS417_21340 - short-chain dehydrogenase, at 4,638,427 to 4,639,248
_21340
PS417_21345: PS417_21345 - GNAT family acetyltransferase, at 4,639,518 to 4,639,997
_21345
PS417_21350: PS417_21350 - hypothetical protein, at 4,640,188 to 4,640,520
_21350
Position (kb)
4638
4639
4640 Strain fitness (log2 ratio)
-2
-1
0
1 at 4637.586 kb on + strand at 4637.925 kb on + strand at 4637.925 kb on + strand, within PS417_21335 at 4637.925 kb on + strand, within PS417_21335 at 4637.925 kb on + strand, within PS417_21335 at 4637.926 kb on - strand, within PS417_21335 at 4637.926 kb on - strand, within PS417_21335 at 4637.926 kb on - strand, within PS417_21335 at 4637.926 kb on - strand, within PS417_21335 at 4638.018 kb on + strand, within PS417_21335 at 4638.377 kb on + strand at 4638.428 kb on + strand at 4638.437 kb on + strand at 4638.642 kb on - strand, within PS417_21340 at 4638.943 kb on + strand, within PS417_21340 at 4638.944 kb on - strand, within PS417_21340 at 4638.944 kb on - strand, within PS417_21340 at 4638.944 kb on - strand, within PS417_21340 at 4638.944 kb on - strand, within PS417_21340 at 4638.944 kb on - strand, within PS417_21340 at 4639.028 kb on + strand, within PS417_21340 at 4639.029 kb on - strand, within PS417_21340 at 4639.202 kb on + strand at 4639.202 kb on + strand at 4639.203 kb on - strand at 4639.295 kb on + strand at 4639.298 kb on - strand at 4639.298 kb on - strand at 4639.324 kb on - strand at 4639.327 kb on + strand at 4639.345 kb on - strand at 4639.366 kb on - strand at 4639.737 kb on - strand, within PS417_21345 at 4639.738 kb on + strand, within PS417_21345 at 4639.738 kb on + strand, within PS417_21345 at 4639.738 kb on + strand, within PS417_21345 at 4639.784 kb on - strand, within PS417_21345 at 4639.922 kb on - strand, within PS417_21345 at 4640.028 kb on + strand at 4640.028 kb on + strand at 4640.029 kb on - strand at 4640.029 kb on - strand at 4640.029 kb on - strand at 4640.029 kb on - strand at 4640.029 kb on - strand at 4640.029 kb on - strand at 4640.029 kb on - strand at 4640.029 kb on - strand at 4640.029 kb on - strand at 4640.029 kb on - strand at 4640.031 kb on + strand at 4640.031 kb on + strand at 4640.031 kb on + strand at 4640.031 kb on + strand at 4640.151 kb on + strand at 4640.154 kb on + strand at 4640.154 kb on + strand at 4640.155 kb on - strand at 4640.155 kb on - strand at 4640.158 kb on + strand at 4640.159 kb on - strand at 4640.167 kb on + strand at 4640.174 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 4,637,586 + +0.1 4,637,925 + -0.5 4,637,925 + PS417_21335 0.52 -0.1 4,637,925 + PS417_21335 0.52 -0.9 4,637,925 + PS417_21335 0.52 -1.7 4,637,926 - PS417_21335 0.52 -1.0 4,637,926 - PS417_21335 0.52 -1.2 4,637,926 - PS417_21335 0.52 -1.5 4,637,926 - PS417_21335 0.52 -1.5 4,638,018 + PS417_21335 0.62 -0.4 4,638,377 + -1.2 4,638,428 + -0.9 4,638,437 + -0.4 4,638,642 - PS417_21340 0.26 +0.9 4,638,943 + PS417_21340 0.63 -0.2 4,638,944 - PS417_21340 0.63 -0.5 4,638,944 - PS417_21340 0.63 -1.4 4,638,944 - PS417_21340 0.63 -2.7 4,638,944 - PS417_21340 0.63 -1.0 4,638,944 - PS417_21340 0.63 -0.5 4,639,028 + PS417_21340 0.73 -1.5 4,639,029 - PS417_21340 0.73 -0.5 4,639,202 + +1.1 4,639,202 + -1.3 4,639,203 - +0.6 4,639,295 + -0.4 4,639,298 - -0.4 4,639,298 - -0.6 4,639,324 - +0.7 4,639,327 + -0.4 4,639,345 - +1.2 4,639,366 - +0.4 4,639,737 - PS417_21345 0.46 +0.0 4,639,738 + PS417_21345 0.46 +0.1 4,639,738 + PS417_21345 0.46 +0.3 4,639,738 + PS417_21345 0.46 -0.1 4,639,784 - PS417_21345 0.55 +0.7 4,639,922 - PS417_21345 0.84 +1.7 4,640,028 + +0.4 4,640,028 + -0.9 4,640,029 - +1.5 4,640,029 - -0.3 4,640,029 - +0.4 4,640,029 - -0.3 4,640,029 - +0.8 4,640,029 - -0.1 4,640,029 - +0.2 4,640,029 - +0.3 4,640,029 - +0.3 4,640,029 - +0.6 4,640,031 + +0.1 4,640,031 + +0.0 4,640,031 + -0.6 4,640,031 + +0.2 4,640,151 + -0.4 4,640,154 + +0.3 4,640,154 + -0.4 4,640,155 - +0.2 4,640,155 - +0.1 4,640,158 + +0.4 4,640,159 - +0.7 4,640,167 + +1.0 4,640,174 - -1.1
Or see this region's nucleotide sequence