Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4660

Experiment: m.b. perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4657 and Echvi_4658 are separated by 44 nucleotidesEchvi_4658 and Echvi_4659 are separated by 42 nucleotidesEchvi_4659 and Echvi_4660 overlap by 60 nucleotidesEchvi_4660 and Echvi_4661 are separated by 181 nucleotides Echvi_4657: Echvi_4657 - Signal transduction histidine kinase, at 5,575,628 to 5,578,177 _4657 Echvi_4658: Echvi_4658 - hypothetical protein, at 5,578,222 to 5,578,863 _4658 Echvi_4659: Echvi_4659 - hypothetical protein, at 5,578,906 to 5,579,052 _4659 Echvi_4660: Echvi_4660 - cystathionine beta-synthase, at 5,578,993 to 5,580,363 _4660 Echvi_4661: Echvi_4661 - aspartate carbamoyltransferase, at 5,580,545 to 5,581,468 _4661 Position (kb) 5578 5579 5580 5581Strain fitness (log2 ratio) -2 -1 0 1 2at 5578.069 kb on + strandat 5578.081 kb on - strandat 5578.081 kb on - strandat 5578.095 kb on - strandat 5578.111 kb on + strandat 5578.123 kb on + strandat 5578.123 kb on + strandat 5578.124 kb on - strandat 5578.124 kb on - strandat 5578.130 kb on + strandat 5578.223 kb on + strandat 5578.249 kb on + strandat 5578.250 kb on - strandat 5578.281 kb on - strandat 5578.281 kb on - strandat 5578.315 kb on + strand, within Echvi_4658at 5578.316 kb on - strand, within Echvi_4658at 5578.344 kb on + strand, within Echvi_4658at 5578.415 kb on + strand, within Echvi_4658at 5578.513 kb on + strand, within Echvi_4658at 5578.569 kb on + strand, within Echvi_4658at 5578.571 kb on + strand, within Echvi_4658at 5578.571 kb on + strand, within Echvi_4658at 5578.571 kb on + strand, within Echvi_4658at 5578.571 kb on + strand, within Echvi_4658at 5578.571 kb on + strand, within Echvi_4658at 5578.571 kb on + strand, within Echvi_4658at 5578.571 kb on + strand, within Echvi_4658at 5578.571 kb on + strand, within Echvi_4658at 5578.571 kb on + strand, within Echvi_4658at 5578.572 kb on - strand, within Echvi_4658at 5578.572 kb on - strand, within Echvi_4658at 5578.572 kb on - strand, within Echvi_4658at 5578.572 kb on - strand, within Echvi_4658at 5578.572 kb on - strand, within Echvi_4658at 5578.572 kb on - strand, within Echvi_4658at 5578.574 kb on + strand, within Echvi_4658at 5578.574 kb on + strand, within Echvi_4658at 5578.575 kb on - strand, within Echvi_4658at 5578.575 kb on - strand, within Echvi_4658at 5578.578 kb on + strand, within Echvi_4658at 5578.579 kb on - strand, within Echvi_4658at 5578.599 kb on + strand, within Echvi_4658at 5578.702 kb on - strand, within Echvi_4658at 5578.747 kb on - strand, within Echvi_4658at 5578.748 kb on + strand, within Echvi_4658at 5578.795 kb on + strand, within Echvi_4658at 5578.823 kb on + strandat 5578.824 kb on - strandat 5578.852 kb on + strandat 5578.852 kb on + strandat 5578.864 kb on - strandat 5578.878 kb on - strandat 5578.905 kb on - strandat 5578.919 kb on - strandat 5578.925 kb on - strand, within Echvi_4659at 5578.925 kb on - strand, within Echvi_4659at 5578.938 kb on + strand, within Echvi_4659at 5578.939 kb on - strand, within Echvi_4659at 5578.960 kb on - strand, within Echvi_4659at 5578.965 kb on + strand, within Echvi_4659at 5578.965 kb on + strand, within Echvi_4659at 5578.995 kb on - strandat 5578.995 kb on - strandat 5579.050 kb on + strandat 5579.050 kb on + strandat 5579.050 kb on + strandat 5579.050 kb on + strandat 5579.050 kb on + strandat 5579.051 kb on - strandat 5579.051 kb on - strandat 5579.051 kb on - strandat 5579.051 kb on - strandat 5579.112 kb on + strandat 5579.424 kb on - strand, within Echvi_4660at 5579.424 kb on - strand, within Echvi_4660at 5579.475 kb on + strand, within Echvi_4660at 5579.488 kb on + strand, within Echvi_4660at 5579.687 kb on + strand, within Echvi_4660at 5579.687 kb on + strand, within Echvi_4660at 5579.688 kb on - strand, within Echvi_4660at 5579.724 kb on - strand, within Echvi_4660at 5579.724 kb on - strand, within Echvi_4660at 5579.744 kb on + strand, within Echvi_4660at 5579.744 kb on + strand, within Echvi_4660at 5579.744 kb on + strand, within Echvi_4660at 5579.744 kb on + strand, within Echvi_4660at 5579.745 kb on - strand, within Echvi_4660at 5579.745 kb on - strand, within Echvi_4660at 5579.793 kb on - strand, within Echvi_4660at 5579.793 kb on - strand, within Echvi_4660at 5579.894 kb on + strand, within Echvi_4660at 5579.895 kb on - strand, within Echvi_4660at 5579.895 kb on - strand, within Echvi_4660at 5579.981 kb on + strand, within Echvi_4660at 5579.982 kb on - strand, within Echvi_4660at 5580.015 kb on + strand, within Echvi_4660at 5580.058 kb on + strand, within Echvi_4660at 5580.164 kb on - strand, within Echvi_4660at 5580.164 kb on - strand, within Echvi_4660at 5580.164 kb on - strand, within Echvi_4660at 5580.184 kb on + strand, within Echvi_4660at 5580.261 kb on - strandat 5580.265 kb on + strandat 5580.275 kb on + strandat 5580.311 kb on - strandat 5580.356 kb on + strandat 5580.357 kb on - strandat 5580.357 kb on - strandat 5580.358 kb on + strandat 5580.368 kb on - strandat 5580.377 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 75 mM
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5,578,069 + +0.3
5,578,081 - -1.3
5,578,081 - -0.3
5,578,095 - +0.5
5,578,111 + +0.7
5,578,123 + -1.7
5,578,123 + +0.6
5,578,124 - -0.2
5,578,124 - +0.1
5,578,130 + -0.6
5,578,223 + +0.3
5,578,249 + +0.2
5,578,250 - +0.8
5,578,281 - -0.5
5,578,281 - -1.6
5,578,315 + Echvi_4658 0.14 -0.9
5,578,316 - Echvi_4658 0.15 -0.5
5,578,344 + Echvi_4658 0.19 +0.2
5,578,415 + Echvi_4658 0.30 -0.8
5,578,513 + Echvi_4658 0.45 -0.0
5,578,569 + Echvi_4658 0.54 -0.9
5,578,571 + Echvi_4658 0.54 +1.6
5,578,571 + Echvi_4658 0.54 +0.4
5,578,571 + Echvi_4658 0.54 -0.5
5,578,571 + Echvi_4658 0.54 +0.1
5,578,571 + Echvi_4658 0.54 +1.1
5,578,571 + Echvi_4658 0.54 -0.7
5,578,571 + Echvi_4658 0.54 -0.8
5,578,571 + Echvi_4658 0.54 -0.9
5,578,571 + Echvi_4658 0.54 +1.1
5,578,572 - Echvi_4658 0.55 -1.3
5,578,572 - Echvi_4658 0.55 +0.9
5,578,572 - Echvi_4658 0.55 -0.1
5,578,572 - Echvi_4658 0.55 -0.7
5,578,572 - Echvi_4658 0.55 -1.5
5,578,572 - Echvi_4658 0.55 +0.2
5,578,574 + Echvi_4658 0.55 -0.3
5,578,574 + Echvi_4658 0.55 -0.7
5,578,575 - Echvi_4658 0.55 +0.6
5,578,575 - Echvi_4658 0.55 +0.4
5,578,578 + Echvi_4658 0.55 -0.9
5,578,579 - Echvi_4658 0.56 -0.2
5,578,599 + Echvi_4658 0.59 +0.8
5,578,702 - Echvi_4658 0.75 -0.2
5,578,747 - Echvi_4658 0.82 +0.5
5,578,748 + Echvi_4658 0.82 -0.9
5,578,795 + Echvi_4658 0.89 +0.5
5,578,823 + +0.2
5,578,824 - -0.4
5,578,852 + -0.5
5,578,852 + -0.2
5,578,864 - -0.2
5,578,878 - -0.0
5,578,905 - -0.8
5,578,919 - -0.5
5,578,925 - Echvi_4659 0.13 +0.6
5,578,925 - Echvi_4659 0.13 -0.4
5,578,938 + Echvi_4659 0.22 +0.2
5,578,939 - Echvi_4659 0.22 +0.8
5,578,960 - Echvi_4659 0.37 -0.7
5,578,965 + Echvi_4659 0.40 -0.7
5,578,965 + Echvi_4659 0.40 -0.2
5,578,995 - -1.7
5,578,995 - -0.5
5,579,050 + -2.2
5,579,050 + -0.2
5,579,050 + +0.3
5,579,050 + -1.8
5,579,050 + -0.9
5,579,051 - -0.7
5,579,051 - -0.5
5,579,051 - -1.6
5,579,051 - -1.2
5,579,112 + -1.1
5,579,424 - Echvi_4660 0.31 -0.1
5,579,424 - Echvi_4660 0.31 -1.8
5,579,475 + Echvi_4660 0.35 -0.6
5,579,488 + Echvi_4660 0.36 -0.0
5,579,687 + Echvi_4660 0.51 -1.8
5,579,687 + Echvi_4660 0.51 -1.9
5,579,688 - Echvi_4660 0.51 -1.7
5,579,724 - Echvi_4660 0.53 +1.2
5,579,724 - Echvi_4660 0.53 -1.6
5,579,744 + Echvi_4660 0.55 -1.2
5,579,744 + Echvi_4660 0.55 -0.7
5,579,744 + Echvi_4660 0.55 +0.1
5,579,744 + Echvi_4660 0.55 +0.6
5,579,745 - Echvi_4660 0.55 +0.7
5,579,745 - Echvi_4660 0.55 -1.3
5,579,793 - Echvi_4660 0.58 -0.2
5,579,793 - Echvi_4660 0.58 +0.1
5,579,894 + Echvi_4660 0.66 -0.8
5,579,895 - Echvi_4660 0.66 -0.5
5,579,895 - Echvi_4660 0.66 +0.2
5,579,981 + Echvi_4660 0.72 -0.6
5,579,982 - Echvi_4660 0.72 +0.1
5,580,015 + Echvi_4660 0.75 +0.3
5,580,058 + Echvi_4660 0.78 -2.0
5,580,164 - Echvi_4660 0.85 -1.1
5,580,164 - Echvi_4660 0.85 +0.4
5,580,164 - Echvi_4660 0.85 -0.9
5,580,184 + Echvi_4660 0.87 -0.6
5,580,261 - +0.8
5,580,265 + -0.6
5,580,275 + -0.4
5,580,311 - -0.6
5,580,356 + +0.2
5,580,357 - +0.9
5,580,357 - -1.8
5,580,358 + -1.2
5,580,368 - -0.1
5,580,377 - +2.0

Or see this region's nucleotide sequence