Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4453

Experiment: m.b. perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4452 and Echvi_4453 are separated by 53 nucleotidesEchvi_4453 and Echvi_4454 are separated by 424 nucleotides Echvi_4452: Echvi_4452 - SusD family., at 5,328,048 to 5,329,406 _4452 Echvi_4453: Echvi_4453 - hypothetical protein, at 5,329,460 to 5,329,729 _4453 Echvi_4454: Echvi_4454 - hypothetical protein, at 5,330,154 to 5,330,609 _4454 Position (kb) 5329 5330Strain fitness (log2 ratio) -2 -1 0 1at 5328.486 kb on + strand, within Echvi_4452at 5328.572 kb on + strand, within Echvi_4452at 5328.573 kb on - strand, within Echvi_4452at 5328.602 kb on + strand, within Echvi_4452at 5328.603 kb on - strand, within Echvi_4452at 5328.606 kb on + strand, within Echvi_4452at 5328.607 kb on - strand, within Echvi_4452at 5328.607 kb on - strand, within Echvi_4452at 5328.607 kb on - strand, within Echvi_4452at 5328.697 kb on - strand, within Echvi_4452at 5328.704 kb on - strand, within Echvi_4452at 5328.725 kb on + strand, within Echvi_4452at 5328.736 kb on - strand, within Echvi_4452at 5328.750 kb on - strand, within Echvi_4452at 5328.819 kb on - strand, within Echvi_4452at 5328.819 kb on - strand, within Echvi_4452at 5328.819 kb on - strand, within Echvi_4452at 5328.839 kb on + strand, within Echvi_4452at 5328.855 kb on + strand, within Echvi_4452at 5328.930 kb on + strand, within Echvi_4452at 5328.930 kb on + strand, within Echvi_4452at 5328.947 kb on - strand, within Echvi_4452at 5328.975 kb on - strand, within Echvi_4452at 5328.975 kb on - strand, within Echvi_4452at 5329.008 kb on + strand, within Echvi_4452at 5329.008 kb on + strand, within Echvi_4452at 5329.008 kb on + strand, within Echvi_4452at 5329.009 kb on - strand, within Echvi_4452at 5329.023 kb on + strand, within Echvi_4452at 5329.024 kb on - strand, within Echvi_4452at 5329.081 kb on + strand, within Echvi_4452at 5329.082 kb on - strand, within Echvi_4452at 5329.123 kb on - strand, within Echvi_4452at 5329.126 kb on + strand, within Echvi_4452at 5329.126 kb on + strand, within Echvi_4452at 5329.127 kb on - strand, within Echvi_4452at 5329.127 kb on - strand, within Echvi_4452at 5329.127 kb on - strand, within Echvi_4452at 5329.148 kb on - strand, within Echvi_4452at 5329.166 kb on - strand, within Echvi_4452at 5329.289 kb on - strandat 5329.324 kb on + strandat 5329.345 kb on - strandat 5329.345 kb on - strandat 5329.345 kb on - strandat 5329.358 kb on - strandat 5329.439 kb on + strandat 5329.568 kb on + strand, within Echvi_4453at 5329.609 kb on + strand, within Echvi_4453at 5329.712 kb on - strandat 5329.784 kb on - strandat 5329.799 kb on + strandat 5329.800 kb on - strandat 5329.812 kb on + strandat 5329.849 kb on + strandat 5329.850 kb on - strandat 5329.850 kb on - strandat 5329.859 kb on - strandat 5329.863 kb on + strandat 5329.864 kb on - strandat 5329.864 kb on - strandat 5329.897 kb on - strandat 5329.921 kb on + strandat 5329.921 kb on + strandat 5329.926 kb on + strandat 5329.926 kb on + strandat 5329.926 kb on + strandat 5329.927 kb on - strandat 5329.927 kb on - strandat 5329.946 kb on - strandat 5329.946 kb on - strandat 5329.946 kb on - strandat 5329.969 kb on - strandat 5329.969 kb on - strandat 5330.022 kb on - strandat 5330.022 kb on - strandat 5330.022 kb on - strandat 5330.022 kb on - strandat 5330.070 kb on - strandat 5330.084 kb on + strandat 5330.090 kb on + strandat 5330.090 kb on + strandat 5330.093 kb on + strandat 5330.098 kb on + strandat 5330.103 kb on + strandat 5330.103 kb on + strandat 5330.103 kb on + strandat 5330.103 kb on + strandat 5330.103 kb on + strandat 5330.103 kb on + strandat 5330.112 kb on + strandat 5330.112 kb on + strandat 5330.204 kb on + strand, within Echvi_4454at 5330.223 kb on + strand, within Echvi_4454at 5330.307 kb on + strand, within Echvi_4454at 5330.307 kb on + strand, within Echvi_4454at 5330.308 kb on - strand, within Echvi_4454at 5330.308 kb on - strand, within Echvi_4454at 5330.308 kb on - strand, within Echvi_4454at 5330.308 kb on - strand, within Echvi_4454at 5330.309 kb on + strand, within Echvi_4454at 5330.309 kb on + strand, within Echvi_4454at 5330.309 kb on + strand, within Echvi_4454at 5330.309 kb on + strand, within Echvi_4454at 5330.309 kb on + strand, within Echvi_4454at 5330.309 kb on + strand, within Echvi_4454at 5330.310 kb on - strand, within Echvi_4454at 5330.310 kb on - strand, within Echvi_4454at 5330.311 kb on + strand, within Echvi_4454at 5330.311 kb on + strand, within Echvi_4454at 5330.311 kb on + strand, within Echvi_4454at 5330.311 kb on + strand, within Echvi_4454at 5330.311 kb on + strand, within Echvi_4454at 5330.311 kb on + strand, within Echvi_4454at 5330.311 kb on + strand, within Echvi_4454at 5330.312 kb on - strand, within Echvi_4454at 5330.312 kb on - strand, within Echvi_4454at 5330.337 kb on + strand, within Echvi_4454at 5330.395 kb on - strand, within Echvi_4454at 5330.579 kb on + strandat 5330.579 kb on + strandat 5330.580 kb on - strandat 5330.582 kb on + strandat 5330.582 kb on + strandat 5330.583 kb on - strandat 5330.583 kb on - strandat 5330.586 kb on + strandat 5330.611 kb on + strandat 5330.611 kb on + strandat 5330.611 kb on + strandat 5330.632 kb on + strandat 5330.633 kb on - strandat 5330.649 kb on - strandat 5330.676 kb on - strandat 5330.676 kb on - strandat 5330.702 kb on - strandat 5330.702 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 75 mM
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5,328,486 + Echvi_4452 0.32 +0.8
5,328,572 + Echvi_4452 0.39 -0.4
5,328,573 - Echvi_4452 0.39 -0.8
5,328,602 + Echvi_4452 0.41 -1.2
5,328,603 - Echvi_4452 0.41 -2.1
5,328,606 + Echvi_4452 0.41 +0.6
5,328,607 - Echvi_4452 0.41 +0.6
5,328,607 - Echvi_4452 0.41 -0.9
5,328,607 - Echvi_4452 0.41 -0.5
5,328,697 - Echvi_4452 0.48 +0.2
5,328,704 - Echvi_4452 0.48 -0.2
5,328,725 + Echvi_4452 0.50 -0.5
5,328,736 - Echvi_4452 0.51 -0.7
5,328,750 - Echvi_4452 0.52 -0.2
5,328,819 - Echvi_4452 0.57 +0.1
5,328,819 - Echvi_4452 0.57 +1.0
5,328,819 - Echvi_4452 0.57 -0.1
5,328,839 + Echvi_4452 0.58 -0.2
5,328,855 + Echvi_4452 0.59 -0.1
5,328,930 + Echvi_4452 0.65 -1.5
5,328,930 + Echvi_4452 0.65 -0.5
5,328,947 - Echvi_4452 0.66 +0.6
5,328,975 - Echvi_4452 0.68 +0.1
5,328,975 - Echvi_4452 0.68 +0.5
5,329,008 + Echvi_4452 0.71 -0.8
5,329,008 + Echvi_4452 0.71 +0.2
5,329,008 + Echvi_4452 0.71 -1.0
5,329,009 - Echvi_4452 0.71 +1.7
5,329,023 + Echvi_4452 0.72 -1.1
5,329,024 - Echvi_4452 0.72 -0.5
5,329,081 + Echvi_4452 0.76 -0.2
5,329,082 - Echvi_4452 0.76 -0.5
5,329,123 - Echvi_4452 0.79 -0.4
5,329,126 + Echvi_4452 0.79 -1.3
5,329,126 + Echvi_4452 0.79 +1.1
5,329,127 - Echvi_4452 0.79 +1.6
5,329,127 - Echvi_4452 0.79 -0.6
5,329,127 - Echvi_4452 0.79 -1.3
5,329,148 - Echvi_4452 0.81 +0.5
5,329,166 - Echvi_4452 0.82 -0.7
5,329,289 - -0.9
5,329,324 + -0.9
5,329,345 - -1.5
5,329,345 - -0.5
5,329,345 - -1.4
5,329,358 - -0.0
5,329,439 + -0.3
5,329,568 + Echvi_4453 0.40 -0.2
5,329,609 + Echvi_4453 0.55 -0.7
5,329,712 - -1.0
5,329,784 - +0.4
5,329,799 + -0.7
5,329,800 - +0.5
5,329,812 + -1.0
5,329,849 + -0.6
5,329,850 - +0.1
5,329,850 - +0.3
5,329,859 - -0.6
5,329,863 + +0.2
5,329,864 - -0.1
5,329,864 - -0.9
5,329,897 - -1.9
5,329,921 + -1.0
5,329,921 + -0.2
5,329,926 + -0.7
5,329,926 + -0.8
5,329,926 + +0.8
5,329,927 - -1.2
5,329,927 - -0.3
5,329,946 - -0.4
5,329,946 - +1.7
5,329,946 - -0.5
5,329,969 - -1.0
5,329,969 - -0.2
5,330,022 - -0.2
5,330,022 - +0.9
5,330,022 - +0.4
5,330,022 - +0.5
5,330,070 - -1.6
5,330,084 + +1.0
5,330,090 + +0.6
5,330,090 + -1.8
5,330,093 + -0.0
5,330,098 + +0.1
5,330,103 + +1.4
5,330,103 + +1.1
5,330,103 + +1.1
5,330,103 + +0.8
5,330,103 + -0.5
5,330,103 + +0.4
5,330,112 + -0.3
5,330,112 + -0.0
5,330,204 + Echvi_4454 0.11 +1.6
5,330,223 + Echvi_4454 0.15 -2.0
5,330,307 + Echvi_4454 0.34 -0.1
5,330,307 + Echvi_4454 0.34 +0.1
5,330,308 - Echvi_4454 0.34 +0.2
5,330,308 - Echvi_4454 0.34 +0.1
5,330,308 - Echvi_4454 0.34 +0.4
5,330,308 - Echvi_4454 0.34 +0.1
5,330,309 + Echvi_4454 0.34 -0.7
5,330,309 + Echvi_4454 0.34 +0.4
5,330,309 + Echvi_4454 0.34 +1.2
5,330,309 + Echvi_4454 0.34 -0.1
5,330,309 + Echvi_4454 0.34 +0.6
5,330,309 + Echvi_4454 0.34 +0.7
5,330,310 - Echvi_4454 0.34 +0.9
5,330,310 - Echvi_4454 0.34 +0.8
5,330,311 + Echvi_4454 0.34 -0.8
5,330,311 + Echvi_4454 0.34 +0.8
5,330,311 + Echvi_4454 0.34 -0.7
5,330,311 + Echvi_4454 0.34 +0.4
5,330,311 + Echvi_4454 0.34 +0.4
5,330,311 + Echvi_4454 0.34 +0.9
5,330,311 + Echvi_4454 0.34 +0.2
5,330,312 - Echvi_4454 0.35 +0.6
5,330,312 - Echvi_4454 0.35 -0.5
5,330,337 + Echvi_4454 0.40 -0.2
5,330,395 - Echvi_4454 0.53 +0.1
5,330,579 + +0.6
5,330,579 + -0.2
5,330,580 - +0.8
5,330,582 + -0.0
5,330,582 + +0.6
5,330,583 - +1.1
5,330,583 - +0.8
5,330,586 + +0.4
5,330,611 + -1.6
5,330,611 + +0.1
5,330,611 + +0.1
5,330,632 + +0.4
5,330,633 - +0.5
5,330,649 - -0.3
5,330,676 - -0.2
5,330,676 - -0.9
5,330,702 - +0.3
5,330,702 - +1.4

Or see this region's nucleotide sequence