Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4330

Experiment: m.b. perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4329 and Echvi_4330 are separated by 46 nucleotidesEchvi_4330 and Echvi_4331 are separated by 18 nucleotides Echvi_4329: Echvi_4329 - Outer membrane receptor proteins, mostly Fe transport, at 5,174,124 to 5,176,478 _4329 Echvi_4330: Echvi_4330 - hypothetical protein, at 5,176,525 to 5,177,778 _4330 Echvi_4331: Echvi_4331 - Uncharacterized iron-regulated membrane protein, at 5,177,797 to 5,179,020 _4331 Position (kb) 5176 5177 5178Strain fitness (log2 ratio) -2 -1 0 1at 5175.536 kb on - strand, within Echvi_4329at 5175.536 kb on - strand, within Echvi_4329at 5175.548 kb on + strand, within Echvi_4329at 5175.548 kb on + strand, within Echvi_4329at 5175.625 kb on - strand, within Echvi_4329at 5175.812 kb on + strand, within Echvi_4329at 5175.813 kb on - strand, within Echvi_4329at 5175.833 kb on - strand, within Echvi_4329at 5175.953 kb on + strand, within Echvi_4329at 5175.953 kb on + strand, within Echvi_4329at 5176.015 kb on + strand, within Echvi_4329at 5176.015 kb on + strand, within Echvi_4329at 5176.159 kb on - strand, within Echvi_4329at 5176.172 kb on + strand, within Echvi_4329at 5176.173 kb on - strand, within Echvi_4329at 5176.180 kb on + strand, within Echvi_4329at 5176.180 kb on + strand, within Echvi_4329at 5176.180 kb on + strand, within Echvi_4329at 5176.180 kb on + strand, within Echvi_4329at 5176.181 kb on - strand, within Echvi_4329at 5176.181 kb on - strand, within Echvi_4329at 5176.181 kb on - strand, within Echvi_4329at 5176.181 kb on - strand, within Echvi_4329at 5176.181 kb on - strand, within Echvi_4329at 5176.185 kb on + strand, within Echvi_4329at 5176.250 kb on - strandat 5176.250 kb on - strandat 5176.260 kb on + strandat 5176.342 kb on - strandat 5176.413 kb on + strandat 5176.452 kb on + strandat 5176.453 kb on - strandat 5176.503 kb on + strandat 5176.503 kb on + strandat 5176.504 kb on - strandat 5176.504 kb on - strandat 5176.504 kb on - strandat 5176.508 kb on - strandat 5176.508 kb on - strandat 5176.509 kb on + strandat 5176.516 kb on + strandat 5176.677 kb on - strand, within Echvi_4330at 5176.715 kb on - strand, within Echvi_4330at 5176.715 kb on - strand, within Echvi_4330at 5176.717 kb on - strand, within Echvi_4330at 5176.942 kb on - strand, within Echvi_4330at 5176.944 kb on + strand, within Echvi_4330at 5176.944 kb on + strand, within Echvi_4330at 5176.963 kb on - strand, within Echvi_4330at 5176.970 kb on - strand, within Echvi_4330at 5176.981 kb on + strand, within Echvi_4330at 5176.982 kb on - strand, within Echvi_4330at 5176.982 kb on - strand, within Echvi_4330at 5176.984 kb on - strand, within Echvi_4330at 5176.984 kb on - strand, within Echvi_4330at 5177.128 kb on + strand, within Echvi_4330at 5177.129 kb on - strand, within Echvi_4330at 5177.129 kb on - strand, within Echvi_4330at 5177.130 kb on + strand, within Echvi_4330at 5177.130 kb on + strand, within Echvi_4330at 5177.167 kb on + strand, within Echvi_4330at 5177.225 kb on - strand, within Echvi_4330at 5177.302 kb on + strand, within Echvi_4330at 5177.303 kb on - strand, within Echvi_4330at 5177.303 kb on - strand, within Echvi_4330at 5177.357 kb on + strand, within Echvi_4330at 5177.407 kb on + strand, within Echvi_4330at 5177.407 kb on + strand, within Echvi_4330at 5177.407 kb on + strand, within Echvi_4330at 5177.428 kb on + strand, within Echvi_4330at 5177.431 kb on - strand, within Echvi_4330at 5177.431 kb on - strand, within Echvi_4330at 5177.477 kb on - strand, within Echvi_4330at 5177.477 kb on - strand, within Echvi_4330at 5177.477 kb on - strand, within Echvi_4330at 5177.477 kb on - strand, within Echvi_4330at 5177.480 kb on + strand, within Echvi_4330at 5177.480 kb on + strand, within Echvi_4330at 5177.481 kb on - strand, within Echvi_4330at 5177.541 kb on + strand, within Echvi_4330at 5177.541 kb on + strand, within Echvi_4330at 5177.542 kb on - strand, within Echvi_4330at 5177.546 kb on + strand, within Echvi_4330at 5177.547 kb on - strand, within Echvi_4330at 5177.623 kb on + strand, within Echvi_4330at 5177.623 kb on + strand, within Echvi_4330at 5177.623 kb on + strand, within Echvi_4330at 5177.624 kb on - strand, within Echvi_4330at 5177.624 kb on - strand, within Echvi_4330at 5177.624 kb on - strand, within Echvi_4330at 5177.639 kb on - strand, within Echvi_4330at 5177.643 kb on + strand, within Echvi_4330at 5177.659 kb on + strandat 5177.667 kb on + strandat 5177.772 kb on - strandat 5177.772 kb on - strandat 5177.777 kb on - strandat 5177.856 kb on - strandat 5177.866 kb on - strandat 5177.866 kb on - strandat 5177.909 kb on + strandat 5177.909 kb on + strandat 5177.910 kb on - strandat 5177.910 kb on - strandat 5177.910 kb on - strandat 5177.910 kb on - strandat 5177.938 kb on + strand, within Echvi_4331at 5177.939 kb on - strand, within Echvi_4331at 5178.044 kb on - strand, within Echvi_4331at 5178.070 kb on + strand, within Echvi_4331at 5178.130 kb on + strand, within Echvi_4331at 5178.139 kb on + strand, within Echvi_4331at 5178.145 kb on + strand, within Echvi_4331at 5178.145 kb on + strand, within Echvi_4331at 5178.152 kb on + strand, within Echvi_4331at 5178.152 kb on + strand, within Echvi_4331at 5178.153 kb on - strand, within Echvi_4331at 5178.153 kb on - strand, within Echvi_4331at 5178.287 kb on + strand, within Echvi_4331at 5178.288 kb on - strand, within Echvi_4331at 5178.323 kb on + strand, within Echvi_4331at 5178.409 kb on + strand, within Echvi_4331at 5178.410 kb on - strand, within Echvi_4331at 5178.436 kb on + strand, within Echvi_4331at 5178.436 kb on + strand, within Echvi_4331at 5178.437 kb on - strand, within Echvi_4331at 5178.480 kb on - strand, within Echvi_4331at 5178.597 kb on - strand, within Echvi_4331at 5178.653 kb on - strand, within Echvi_4331at 5178.728 kb on - strand, within Echvi_4331at 5178.742 kb on - strand, within Echvi_4331at 5178.742 kb on - strand, within Echvi_4331at 5178.751 kb on + strand, within Echvi_4331

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 75 mM
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5,175,536 - Echvi_4329 0.60 -0.1
5,175,536 - Echvi_4329 0.60 -1.0
5,175,548 + Echvi_4329 0.60 -2.0
5,175,548 + Echvi_4329 0.60 +1.2
5,175,625 - Echvi_4329 0.64 -0.3
5,175,812 + Echvi_4329 0.72 -0.2
5,175,813 - Echvi_4329 0.72 -0.4
5,175,833 - Echvi_4329 0.73 -1.8
5,175,953 + Echvi_4329 0.78 -1.4
5,175,953 + Echvi_4329 0.78 +0.6
5,176,015 + Echvi_4329 0.80 -0.4
5,176,015 + Echvi_4329 0.80 +1.2
5,176,159 - Echvi_4329 0.86 -0.9
5,176,172 + Echvi_4329 0.87 -0.9
5,176,173 - Echvi_4329 0.87 -0.9
5,176,180 + Echvi_4329 0.87 +0.3
5,176,180 + Echvi_4329 0.87 +0.2
5,176,180 + Echvi_4329 0.87 -0.1
5,176,180 + Echvi_4329 0.87 -0.2
5,176,181 - Echvi_4329 0.87 -1.1
5,176,181 - Echvi_4329 0.87 -2.7
5,176,181 - Echvi_4329 0.87 -0.5
5,176,181 - Echvi_4329 0.87 -1.1
5,176,181 - Echvi_4329 0.87 -1.0
5,176,185 + Echvi_4329 0.88 -1.1
5,176,250 - +1.3
5,176,250 - -0.8
5,176,260 + +1.4
5,176,342 - -0.4
5,176,413 + +0.2
5,176,452 + -2.6
5,176,453 - +0.2
5,176,503 + -0.3
5,176,503 + -1.3
5,176,504 - -0.0
5,176,504 - +0.2
5,176,504 - -1.5
5,176,508 - +0.2
5,176,508 - +0.3
5,176,509 + -0.3
5,176,516 + -0.9
5,176,677 - Echvi_4330 0.12 -1.5
5,176,715 - Echvi_4330 0.15 -1.5
5,176,715 - Echvi_4330 0.15 -0.3
5,176,717 - Echvi_4330 0.15 +0.3
5,176,942 - Echvi_4330 0.33 +0.4
5,176,944 + Echvi_4330 0.33 -0.3
5,176,944 + Echvi_4330 0.33 -1.1
5,176,963 - Echvi_4330 0.35 -0.7
5,176,970 - Echvi_4330 0.35 +0.4
5,176,981 + Echvi_4330 0.36 -0.5
5,176,982 - Echvi_4330 0.36 -0.7
5,176,982 - Echvi_4330 0.36 -0.1
5,176,984 - Echvi_4330 0.37 -0.2
5,176,984 - Echvi_4330 0.37 -0.2
5,177,128 + Echvi_4330 0.48 +0.0
5,177,129 - Echvi_4330 0.48 -2.1
5,177,129 - Echvi_4330 0.48 +0.8
5,177,130 + Echvi_4330 0.48 -0.6
5,177,130 + Echvi_4330 0.48 +0.6
5,177,167 + Echvi_4330 0.51 -1.0
5,177,225 - Echvi_4330 0.56 -1.9
5,177,302 + Echvi_4330 0.62 -2.6
5,177,303 - Echvi_4330 0.62 -0.5
5,177,303 - Echvi_4330 0.62 -0.6
5,177,357 + Echvi_4330 0.66 -0.1
5,177,407 + Echvi_4330 0.70 -0.3
5,177,407 + Echvi_4330 0.70 +0.0
5,177,407 + Echvi_4330 0.70 +1.6
5,177,428 + Echvi_4330 0.72 +1.0
5,177,431 - Echvi_4330 0.72 -0.3
5,177,431 - Echvi_4330 0.72 +0.1
5,177,477 - Echvi_4330 0.76 -0.5
5,177,477 - Echvi_4330 0.76 -0.7
5,177,477 - Echvi_4330 0.76 -0.8
5,177,477 - Echvi_4330 0.76 -0.6
5,177,480 + Echvi_4330 0.76 +0.2
5,177,480 + Echvi_4330 0.76 -0.8
5,177,481 - Echvi_4330 0.76 -1.0
5,177,541 + Echvi_4330 0.81 -0.9
5,177,541 + Echvi_4330 0.81 -0.2
5,177,542 - Echvi_4330 0.81 -0.5
5,177,546 + Echvi_4330 0.81 +0.4
5,177,547 - Echvi_4330 0.81 -0.4
5,177,623 + Echvi_4330 0.88 +0.0
5,177,623 + Echvi_4330 0.88 -0.9
5,177,623 + Echvi_4330 0.88 -0.3
5,177,624 - Echvi_4330 0.88 -0.1
5,177,624 - Echvi_4330 0.88 -0.1
5,177,624 - Echvi_4330 0.88 -0.4
5,177,639 - Echvi_4330 0.89 +0.1
5,177,643 + Echvi_4330 0.89 -0.5
5,177,659 + -0.6
5,177,667 + -1.7
5,177,772 - +0.2
5,177,772 - +0.1
5,177,777 - +0.2
5,177,856 - -1.2
5,177,866 - +1.5
5,177,866 - -0.2
5,177,909 + -0.8
5,177,909 + +0.5
5,177,910 - +0.7
5,177,910 - -0.5
5,177,910 - +1.4
5,177,910 - +0.3
5,177,938 + Echvi_4331 0.12 +0.4
5,177,939 - Echvi_4331 0.12 -0.7
5,178,044 - Echvi_4331 0.20 -0.3
5,178,070 + Echvi_4331 0.22 -0.9
5,178,130 + Echvi_4331 0.27 +0.7
5,178,139 + Echvi_4331 0.28 -0.3
5,178,145 + Echvi_4331 0.28 -0.8
5,178,145 + Echvi_4331 0.28 -2.4
5,178,152 + Echvi_4331 0.29 -0.6
5,178,152 + Echvi_4331 0.29 +0.5
5,178,153 - Echvi_4331 0.29 -0.6
5,178,153 - Echvi_4331 0.29 -0.7
5,178,287 + Echvi_4331 0.40 -0.7
5,178,288 - Echvi_4331 0.40 +0.7
5,178,323 + Echvi_4331 0.43 -0.4
5,178,409 + Echvi_4331 0.50 -0.4
5,178,410 - Echvi_4331 0.50 +0.8
5,178,436 + Echvi_4331 0.52 +0.2
5,178,436 + Echvi_4331 0.52 -0.6
5,178,437 - Echvi_4331 0.52 -0.9
5,178,480 - Echvi_4331 0.56 -0.1
5,178,597 - Echvi_4331 0.65 -0.8
5,178,653 - Echvi_4331 0.70 -0.3
5,178,728 - Echvi_4331 0.76 -0.0
5,178,742 - Echvi_4331 0.77 -0.2
5,178,742 - Echvi_4331 0.77 +0.8
5,178,751 + Echvi_4331 0.78 -0.1

Or see this region's nucleotide sequence