Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4130

Experiment: m.b. perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4129 and Echvi_4130 are separated by 290 nucleotidesEchvi_4130 and Echvi_4131 are separated by 26 nucleotidesEchvi_4131 and Echvi_4132 are separated by 6 nucleotides Echvi_4129: Echvi_4129 - Putative multicopper oxidases, at 4,944,668 to 4,947,031 _4129 Echvi_4130: Echvi_4130 - hypothetical protein, at 4,947,322 to 4,948,083 _4130 Echvi_4131: Echvi_4131 - Predicted membrane protein, at 4,948,110 to 4,948,565 _4131 Echvi_4132: Echvi_4132 - Protein of unknown function (DUF3347)., at 4,948,572 to 4,949,102 _4132 Position (kb) 4947 4948 4949Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4946.323 kb on + strand, within Echvi_4129at 4946.323 kb on + strand, within Echvi_4129at 4946.324 kb on - strand, within Echvi_4129at 4946.324 kb on - strand, within Echvi_4129at 4946.331 kb on + strand, within Echvi_4129at 4946.331 kb on + strand, within Echvi_4129at 4946.332 kb on - strand, within Echvi_4129at 4946.416 kb on + strand, within Echvi_4129at 4946.449 kb on - strand, within Echvi_4129at 4946.481 kb on - strand, within Echvi_4129at 4946.608 kb on + strand, within Echvi_4129at 4946.620 kb on - strand, within Echvi_4129at 4946.625 kb on + strand, within Echvi_4129at 4946.625 kb on + strand, within Echvi_4129at 4946.625 kb on + strand, within Echvi_4129at 4946.625 kb on + strand, within Echvi_4129at 4946.625 kb on + strand, within Echvi_4129at 4946.625 kb on + strand, within Echvi_4129at 4946.626 kb on - strand, within Echvi_4129at 4946.626 kb on - strand, within Echvi_4129at 4946.626 kb on - strand, within Echvi_4129at 4946.698 kb on - strand, within Echvi_4129at 4946.698 kb on - strand, within Echvi_4129at 4946.791 kb on - strand, within Echvi_4129at 4946.791 kb on - strand, within Echvi_4129at 4946.804 kb on - strandat 4946.811 kb on - strandat 4946.869 kb on + strandat 4946.870 kb on - strandat 4946.873 kb on + strandat 4946.899 kb on + strandat 4946.900 kb on - strandat 4946.902 kb on - strandat 4946.902 kb on - strandat 4947.001 kb on + strandat 4947.004 kb on + strandat 4947.025 kb on + strandat 4947.025 kb on + strandat 4947.045 kb on + strandat 4947.045 kb on + strandat 4947.076 kb on + strandat 4947.083 kb on - strandat 4947.083 kb on - strandat 4947.083 kb on - strandat 4947.107 kb on - strandat 4947.123 kb on - strandat 4947.126 kb on - strandat 4947.130 kb on + strandat 4947.131 kb on - strandat 4947.133 kb on + strandat 4947.135 kb on + strandat 4947.135 kb on + strandat 4947.136 kb on - strandat 4947.143 kb on + strandat 4947.148 kb on - strandat 4947.163 kb on + strandat 4947.163 kb on + strandat 4947.164 kb on - strandat 4947.296 kb on + strandat 4947.296 kb on + strandat 4947.297 kb on - strandat 4947.297 kb on - strandat 4947.318 kb on + strandat 4947.319 kb on - strandat 4947.319 kb on - strandat 4947.452 kb on + strand, within Echvi_4130at 4947.452 kb on + strand, within Echvi_4130at 4947.453 kb on - strand, within Echvi_4130at 4947.453 kb on - strand, within Echvi_4130at 4947.453 kb on - strand, within Echvi_4130at 4947.583 kb on + strand, within Echvi_4130at 4947.583 kb on + strand, within Echvi_4130at 4947.583 kb on + strand, within Echvi_4130at 4947.584 kb on - strand, within Echvi_4130at 4947.584 kb on - strand, within Echvi_4130at 4947.584 kb on - strand, within Echvi_4130at 4947.584 kb on - strand, within Echvi_4130at 4947.606 kb on + strand, within Echvi_4130at 4947.625 kb on + strand, within Echvi_4130at 4947.625 kb on + strand, within Echvi_4130at 4947.626 kb on - strand, within Echvi_4130at 4947.639 kb on + strand, within Echvi_4130at 4947.734 kb on - strand, within Echvi_4130at 4947.802 kb on - strand, within Echvi_4130at 4947.820 kb on + strand, within Echvi_4130at 4947.821 kb on - strand, within Echvi_4130at 4947.821 kb on - strand, within Echvi_4130at 4947.822 kb on + strand, within Echvi_4130at 4947.858 kb on + strand, within Echvi_4130at 4947.858 kb on + strand, within Echvi_4130at 4947.858 kb on + strand, within Echvi_4130at 4947.900 kb on + strand, within Echvi_4130at 4948.024 kb on - strandat 4948.072 kb on - strandat 4948.072 kb on - strandat 4948.078 kb on - strandat 4948.078 kb on - strandat 4948.132 kb on + strandat 4948.136 kb on + strandat 4948.136 kb on + strandat 4948.136 kb on + strandat 4948.136 kb on + strandat 4948.136 kb on + strandat 4948.136 kb on + strandat 4948.136 kb on + strandat 4948.136 kb on + strandat 4948.136 kb on + strandat 4948.136 kb on + strandat 4948.136 kb on + strandat 4948.136 kb on + strandat 4948.136 kb on + strandat 4948.136 kb on + strandat 4948.178 kb on + strand, within Echvi_4131at 4948.295 kb on + strand, within Echvi_4131at 4948.295 kb on + strand, within Echvi_4131at 4948.296 kb on - strand, within Echvi_4131at 4948.329 kb on + strand, within Echvi_4131at 4948.347 kb on + strand, within Echvi_4131at 4948.358 kb on + strand, within Echvi_4131at 4948.358 kb on + strand, within Echvi_4131at 4948.359 kb on - strand, within Echvi_4131at 4948.362 kb on + strand, within Echvi_4131at 4948.363 kb on - strand, within Echvi_4131at 4948.363 kb on - strand, within Echvi_4131at 4948.380 kb on + strand, within Echvi_4131at 4948.385 kb on - strand, within Echvi_4131at 4948.412 kb on + strand, within Echvi_4131at 4948.415 kb on + strand, within Echvi_4131at 4948.415 kb on + strand, within Echvi_4131at 4948.416 kb on - strand, within Echvi_4131at 4948.417 kb on + strand, within Echvi_4131at 4948.417 kb on + strand, within Echvi_4131at 4948.417 kb on + strand, within Echvi_4131at 4948.418 kb on - strand, within Echvi_4131at 4948.418 kb on - strand, within Echvi_4131at 4948.418 kb on - strand, within Echvi_4131at 4948.419 kb on + strand, within Echvi_4131at 4948.433 kb on + strand, within Echvi_4131at 4948.434 kb on - strand, within Echvi_4131at 4948.504 kb on - strand, within Echvi_4131at 4948.565 kb on + strandat 4948.574 kb on - strandat 4948.653 kb on + strand, within Echvi_4132at 4948.661 kb on - strand, within Echvi_4132at 4948.704 kb on + strand, within Echvi_4132at 4948.704 kb on + strand, within Echvi_4132at 4948.704 kb on + strand, within Echvi_4132at 4948.704 kb on + strand, within Echvi_4132at 4948.704 kb on + strand, within Echvi_4132at 4948.704 kb on + strand, within Echvi_4132at 4948.705 kb on - strand, within Echvi_4132at 4948.705 kb on - strand, within Echvi_4132at 4948.705 kb on - strand, within Echvi_4132at 4948.846 kb on - strand, within Echvi_4132at 4948.854 kb on + strand, within Echvi_4132at 4948.854 kb on + strand, within Echvi_4132at 4948.865 kb on + strand, within Echvi_4132at 4948.908 kb on + strand, within Echvi_4132at 4948.911 kb on + strand, within Echvi_4132at 4948.911 kb on + strand, within Echvi_4132at 4948.911 kb on + strand, within Echvi_4132at 4948.912 kb on - strand, within Echvi_4132at 4948.929 kb on + strand, within Echvi_4132at 4948.931 kb on + strand, within Echvi_4132at 4948.931 kb on + strand, within Echvi_4132at 4948.931 kb on + strand, within Echvi_4132at 4948.931 kb on + strand, within Echvi_4132at 4948.931 kb on + strand, within Echvi_4132at 4948.931 kb on + strand, within Echvi_4132at 4948.931 kb on + strand, within Echvi_4132at 4948.931 kb on + strand, within Echvi_4132at 4948.931 kb on + strand, within Echvi_4132at 4948.932 kb on - strand, within Echvi_4132at 4948.932 kb on - strand, within Echvi_4132at 4948.932 kb on - strand, within Echvi_4132at 4948.933 kb on + strand, within Echvi_4132at 4948.934 kb on - strand, within Echvi_4132at 4948.934 kb on - strand, within Echvi_4132at 4948.942 kb on + strand, within Echvi_4132at 4948.942 kb on + strand, within Echvi_4132at 4948.943 kb on - strand, within Echvi_4132at 4948.943 kb on - strand, within Echvi_4132at 4948.943 kb on - strand, within Echvi_4132at 4948.943 kb on - strand, within Echvi_4132at 4948.943 kb on - strand, within Echvi_4132at 4948.943 kb on - strand, within Echvi_4132at 4948.981 kb on - strand, within Echvi_4132at 4948.981 kb on - strand, within Echvi_4132at 4948.981 kb on - strand, within Echvi_4132

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 75 mM
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4,946,323 + Echvi_4129 0.70 -0.3
4,946,323 + Echvi_4129 0.70 +0.5
4,946,324 - Echvi_4129 0.70 -0.7
4,946,324 - Echvi_4129 0.70 -1.0
4,946,331 + Echvi_4129 0.70 -0.1
4,946,331 + Echvi_4129 0.70 +0.6
4,946,332 - Echvi_4129 0.70 -0.4
4,946,416 + Echvi_4129 0.74 -2.2
4,946,449 - Echvi_4129 0.75 -0.7
4,946,481 - Echvi_4129 0.77 +0.7
4,946,608 + Echvi_4129 0.82 +0.3
4,946,620 - Echvi_4129 0.83 -0.2
4,946,625 + Echvi_4129 0.83 +0.4
4,946,625 + Echvi_4129 0.83 -0.8
4,946,625 + Echvi_4129 0.83 +0.0
4,946,625 + Echvi_4129 0.83 -0.1
4,946,625 + Echvi_4129 0.83 -0.0
4,946,625 + Echvi_4129 0.83 +0.1
4,946,626 - Echvi_4129 0.83 +0.3
4,946,626 - Echvi_4129 0.83 -2.8
4,946,626 - Echvi_4129 0.83 +0.2
4,946,698 - Echvi_4129 0.86 +0.6
4,946,698 - Echvi_4129 0.86 +0.6
4,946,791 - Echvi_4129 0.90 +0.0
4,946,791 - Echvi_4129 0.90 -0.2
4,946,804 - +0.5
4,946,811 - -0.4
4,946,869 + +0.3
4,946,870 - -0.7
4,946,873 + -0.3
4,946,899 + +0.3
4,946,900 - -1.1
4,946,902 - -0.4
4,946,902 - -1.5
4,947,001 + +0.8
4,947,004 + -1.1
4,947,025 + -0.8
4,947,025 + +1.5
4,947,045 + +1.4
4,947,045 + -0.3
4,947,076 + -0.0
4,947,083 - -0.9
4,947,083 - +0.6
4,947,083 - -1.1
4,947,107 - -0.8
4,947,123 - -0.8
4,947,126 - +0.0
4,947,130 + -1.4
4,947,131 - -1.1
4,947,133 + +0.2
4,947,135 + -1.0
4,947,135 + +1.9
4,947,136 - +0.0
4,947,143 + -1.2
4,947,148 - -1.7
4,947,163 + -0.3
4,947,163 + -0.1
4,947,164 - -0.5
4,947,296 + +1.0
4,947,296 + -0.6
4,947,297 - -0.2
4,947,297 - -0.6
4,947,318 + -0.4
4,947,319 - -0.5
4,947,319 - -0.6
4,947,452 + Echvi_4130 0.17 -0.5
4,947,452 + Echvi_4130 0.17 -1.5
4,947,453 - Echvi_4130 0.17 -1.0
4,947,453 - Echvi_4130 0.17 -0.7
4,947,453 - Echvi_4130 0.17 +0.7
4,947,583 + Echvi_4130 0.34 +0.0
4,947,583 + Echvi_4130 0.34 -1.6
4,947,583 + Echvi_4130 0.34 -0.6
4,947,584 - Echvi_4130 0.34 -0.2
4,947,584 - Echvi_4130 0.34 -0.1
4,947,584 - Echvi_4130 0.34 -0.8
4,947,584 - Echvi_4130 0.34 +0.0
4,947,606 + Echvi_4130 0.37 -0.6
4,947,625 + Echvi_4130 0.40 -0.2
4,947,625 + Echvi_4130 0.40 +0.4
4,947,626 - Echvi_4130 0.40 -1.1
4,947,639 + Echvi_4130 0.42 -1.4
4,947,734 - Echvi_4130 0.54 -0.7
4,947,802 - Echvi_4130 0.63 -0.8
4,947,820 + Echvi_4130 0.65 -0.8
4,947,821 - Echvi_4130 0.65 -0.5
4,947,821 - Echvi_4130 0.65 -0.2
4,947,822 + Echvi_4130 0.66 -0.6
4,947,858 + Echvi_4130 0.70 -0.7
4,947,858 + Echvi_4130 0.70 +0.1
4,947,858 + Echvi_4130 0.70 -0.2
4,947,900 + Echvi_4130 0.76 -1.0
4,948,024 - -0.5
4,948,072 - -0.4
4,948,072 - +1.0
4,948,078 - -1.0
4,948,078 - -0.3
4,948,132 + +0.4
4,948,136 + -0.8
4,948,136 + -0.7
4,948,136 + -0.4
4,948,136 + -0.8
4,948,136 + +0.8
4,948,136 + +0.2
4,948,136 + -0.7
4,948,136 + +0.8
4,948,136 + +1.0
4,948,136 + +0.2
4,948,136 + +0.2
4,948,136 + +1.4
4,948,136 + -0.6
4,948,136 + -0.9
4,948,178 + Echvi_4131 0.15 +0.8
4,948,295 + Echvi_4131 0.41 -0.3
4,948,295 + Echvi_4131 0.41 -1.3
4,948,296 - Echvi_4131 0.41 +0.5
4,948,329 + Echvi_4131 0.48 -1.0
4,948,347 + Echvi_4131 0.52 +0.1
4,948,358 + Echvi_4131 0.54 +1.2
4,948,358 + Echvi_4131 0.54 +0.2
4,948,359 - Echvi_4131 0.55 -0.7
4,948,362 + Echvi_4131 0.55 +0.1
4,948,363 - Echvi_4131 0.55 +2.0
4,948,363 - Echvi_4131 0.55 -1.6
4,948,380 + Echvi_4131 0.59 -2.0
4,948,385 - Echvi_4131 0.60 +0.1
4,948,412 + Echvi_4131 0.66 +0.6
4,948,415 + Echvi_4131 0.67 +0.7
4,948,415 + Echvi_4131 0.67 -0.7
4,948,416 - Echvi_4131 0.67 -1.1
4,948,417 + Echvi_4131 0.67 -0.0
4,948,417 + Echvi_4131 0.67 +0.2
4,948,417 + Echvi_4131 0.67 -1.3
4,948,418 - Echvi_4131 0.68 -0.2
4,948,418 - Echvi_4131 0.68 +1.1
4,948,418 - Echvi_4131 0.68 -0.6
4,948,419 + Echvi_4131 0.68 -0.4
4,948,433 + Echvi_4131 0.71 +0.7
4,948,434 - Echvi_4131 0.71 -1.2
4,948,504 - Echvi_4131 0.86 -1.6
4,948,565 + +0.1
4,948,574 - -1.1
4,948,653 + Echvi_4132 0.15 -0.5
4,948,661 - Echvi_4132 0.17 +0.5
4,948,704 + Echvi_4132 0.25 -0.4
4,948,704 + Echvi_4132 0.25 +0.9
4,948,704 + Echvi_4132 0.25 -0.2
4,948,704 + Echvi_4132 0.25 -0.8
4,948,704 + Echvi_4132 0.25 -0.8
4,948,704 + Echvi_4132 0.25 -0.4
4,948,705 - Echvi_4132 0.25 +0.4
4,948,705 - Echvi_4132 0.25 -0.3
4,948,705 - Echvi_4132 0.25 +0.0
4,948,846 - Echvi_4132 0.52 -0.3
4,948,854 + Echvi_4132 0.53 -0.8
4,948,854 + Echvi_4132 0.53 -1.0
4,948,865 + Echvi_4132 0.55 -1.0
4,948,908 + Echvi_4132 0.63 +0.3
4,948,911 + Echvi_4132 0.64 +0.1
4,948,911 + Echvi_4132 0.64 -1.0
4,948,911 + Echvi_4132 0.64 -0.5
4,948,912 - Echvi_4132 0.64 +0.6
4,948,929 + Echvi_4132 0.67 -1.0
4,948,931 + Echvi_4132 0.68 -0.2
4,948,931 + Echvi_4132 0.68 +0.2
4,948,931 + Echvi_4132 0.68 -0.2
4,948,931 + Echvi_4132 0.68 -0.2
4,948,931 + Echvi_4132 0.68 -0.1
4,948,931 + Echvi_4132 0.68 -0.5
4,948,931 + Echvi_4132 0.68 -0.8
4,948,931 + Echvi_4132 0.68 +0.6
4,948,931 + Echvi_4132 0.68 -0.2
4,948,932 - Echvi_4132 0.68 -1.5
4,948,932 - Echvi_4132 0.68 -0.5
4,948,932 - Echvi_4132 0.68 +1.7
4,948,933 + Echvi_4132 0.68 -1.2
4,948,934 - Echvi_4132 0.68 +1.0
4,948,934 - Echvi_4132 0.68 +0.1
4,948,942 + Echvi_4132 0.70 +0.6
4,948,942 + Echvi_4132 0.70 +2.4
4,948,943 - Echvi_4132 0.70 -0.4
4,948,943 - Echvi_4132 0.70 +1.1
4,948,943 - Echvi_4132 0.70 +0.7
4,948,943 - Echvi_4132 0.70 -0.2
4,948,943 - Echvi_4132 0.70 +0.2
4,948,943 - Echvi_4132 0.70 +0.2
4,948,981 - Echvi_4132 0.77 -0.5
4,948,981 - Echvi_4132 0.77 +0.8
4,948,981 - Echvi_4132 0.77 +0.9

Or see this region's nucleotide sequence