Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4032

Experiment: m.b. perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4031 and Echvi_4032 are separated by 92 nucleotidesEchvi_4032 and Echvi_4033 are separated by 642 nucleotides Echvi_4031: Echvi_4031 - glycerate kinase, at 4,826,726 to 4,827,838 _4031 Echvi_4032: Echvi_4032 - amino acid carrier protein, at 4,827,931 to 4,829,289 _4032 Echvi_4033: Echvi_4033 - glutamate 5-kinase (EC 2.7.2.11) (from data), at 4,829,932 to 4,831,020 _4033 Position (kb) 4827 4828 4829 4830Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4827.033 kb on + strand, within Echvi_4031at 4827.088 kb on + strand, within Echvi_4031at 4827.280 kb on + strand, within Echvi_4031at 4827.751 kb on - strandat 4827.843 kb on + strandat 4827.843 kb on + strandat 4827.844 kb on - strandat 4827.848 kb on - strandat 4827.906 kb on + strandat 4827.906 kb on + strandat 4827.907 kb on - strandat 4827.933 kb on - strandat 4827.966 kb on - strandat 4827.966 kb on - strandat 4827.966 kb on - strandat 4828.001 kb on + strandat 4828.001 kb on + strandat 4828.001 kb on + strandat 4828.002 kb on - strandat 4828.040 kb on + strandat 4828.040 kb on + strandat 4828.040 kb on + strandat 4828.109 kb on + strand, within Echvi_4032at 4828.115 kb on + strand, within Echvi_4032at 4828.116 kb on - strand, within Echvi_4032at 4828.116 kb on - strand, within Echvi_4032at 4828.119 kb on + strand, within Echvi_4032at 4828.121 kb on + strand, within Echvi_4032at 4828.124 kb on + strand, within Echvi_4032at 4828.125 kb on - strand, within Echvi_4032at 4828.164 kb on + strand, within Echvi_4032at 4828.164 kb on + strand, within Echvi_4032at 4828.172 kb on + strand, within Echvi_4032at 4828.172 kb on + strand, within Echvi_4032at 4828.172 kb on + strand, within Echvi_4032at 4828.175 kb on + strand, within Echvi_4032at 4828.175 kb on + strand, within Echvi_4032at 4828.175 kb on + strand, within Echvi_4032at 4828.176 kb on - strand, within Echvi_4032at 4828.182 kb on - strand, within Echvi_4032at 4828.182 kb on - strand, within Echvi_4032at 4828.186 kb on - strand, within Echvi_4032at 4828.186 kb on - strand, within Echvi_4032at 4828.207 kb on + strand, within Echvi_4032at 4828.207 kb on + strand, within Echvi_4032at 4828.225 kb on + strand, within Echvi_4032at 4828.226 kb on - strand, within Echvi_4032at 4828.344 kb on + strand, within Echvi_4032at 4828.348 kb on + strand, within Echvi_4032at 4828.348 kb on + strand, within Echvi_4032at 4828.349 kb on - strand, within Echvi_4032at 4828.360 kb on - strand, within Echvi_4032at 4828.365 kb on + strand, within Echvi_4032at 4828.603 kb on + strand, within Echvi_4032at 4828.885 kb on + strand, within Echvi_4032at 4828.885 kb on + strand, within Echvi_4032at 4828.886 kb on - strand, within Echvi_4032at 4828.886 kb on - strand, within Echvi_4032at 4828.892 kb on + strand, within Echvi_4032at 4828.892 kb on + strand, within Echvi_4032at 4828.893 kb on - strand, within Echvi_4032at 4828.893 kb on - strand, within Echvi_4032at 4828.959 kb on + strand, within Echvi_4032at 4828.959 kb on + strand, within Echvi_4032at 4828.965 kb on - strand, within Echvi_4032at 4829.045 kb on - strand, within Echvi_4032at 4829.109 kb on + strand, within Echvi_4032at 4829.109 kb on + strand, within Echvi_4032at 4829.109 kb on + strand, within Echvi_4032at 4829.110 kb on - strand, within Echvi_4032at 4829.110 kb on - strand, within Echvi_4032at 4829.198 kb on + strandat 4829.198 kb on + strandat 4829.209 kb on + strandat 4829.210 kb on - strandat 4829.263 kb on - strandat 4829.263 kb on - strandat 4829.266 kb on - strandat 4829.290 kb on - strandat 4829.301 kb on - strandat 4829.391 kb on - strandat 4829.392 kb on + strandat 4829.392 kb on + strandat 4829.392 kb on + strandat 4829.399 kb on + strandat 4829.400 kb on - strandat 4829.446 kb on + strandat 4829.446 kb on + strandat 4829.446 kb on + strandat 4829.458 kb on + strandat 4829.465 kb on + strandat 4829.469 kb on - strandat 4829.501 kb on + strandat 4829.509 kb on - strandat 4829.546 kb on - strandat 4829.546 kb on - strandat 4829.595 kb on + strandat 4829.628 kb on - strandat 4829.630 kb on - strandat 4829.630 kb on - strandat 4829.663 kb on + strandat 4829.664 kb on - strandat 4829.774 kb on + strandat 4829.775 kb on - strandat 4829.786 kb on - strandat 4829.786 kb on - strandat 4829.860 kb on - strandat 4829.886 kb on - strandat 4829.921 kb on - strandat 4829.931 kb on + strandat 4829.981 kb on + strandat 4829.982 kb on - strandat 4830.046 kb on + strand, within Echvi_4033at 4830.101 kb on - strand, within Echvi_4033at 4830.108 kb on + strand, within Echvi_4033at 4830.108 kb on + strand, within Echvi_4033at 4830.109 kb on - strand, within Echvi_4033at 4830.196 kb on + strand, within Echvi_4033at 4830.219 kb on + strand, within Echvi_4033

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 75 mM
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4,827,033 + Echvi_4031 0.28 -0.2
4,827,088 + Echvi_4031 0.33 -0.1
4,827,280 + Echvi_4031 0.50 +0.5
4,827,751 - +0.7
4,827,843 + +0.3
4,827,843 + -1.4
4,827,844 - -2.0
4,827,848 - +0.1
4,827,906 + -1.1
4,827,906 + -0.3
4,827,907 - -1.8
4,827,933 - -0.7
4,827,966 - -2.6
4,827,966 - -0.6
4,827,966 - -0.9
4,828,001 + -2.0
4,828,001 + +0.0
4,828,001 + -1.9
4,828,002 - -0.9
4,828,040 + -0.6
4,828,040 + -1.7
4,828,040 + -1.4
4,828,109 + Echvi_4032 0.13 -2.5
4,828,115 + Echvi_4032 0.14 -0.8
4,828,116 - Echvi_4032 0.14 -1.5
4,828,116 - Echvi_4032 0.14 -0.4
4,828,119 + Echvi_4032 0.14 -0.7
4,828,121 + Echvi_4032 0.14 -1.2
4,828,124 + Echvi_4032 0.14 +1.2
4,828,125 - Echvi_4032 0.14 -1.2
4,828,164 + Echvi_4032 0.17 +0.0
4,828,164 + Echvi_4032 0.17 -1.5
4,828,172 + Echvi_4032 0.18 -0.2
4,828,172 + Echvi_4032 0.18 -1.9
4,828,172 + Echvi_4032 0.18 -0.8
4,828,175 + Echvi_4032 0.18 -1.0
4,828,175 + Echvi_4032 0.18 -1.5
4,828,175 + Echvi_4032 0.18 -1.6
4,828,176 - Echvi_4032 0.18 +0.3
4,828,182 - Echvi_4032 0.18 -1.0
4,828,182 - Echvi_4032 0.18 -2.0
4,828,186 - Echvi_4032 0.19 -1.4
4,828,186 - Echvi_4032 0.19 -1.8
4,828,207 + Echvi_4032 0.20 -3.3
4,828,207 + Echvi_4032 0.20 -2.5
4,828,225 + Echvi_4032 0.22 -0.2
4,828,226 - Echvi_4032 0.22 -1.5
4,828,344 + Echvi_4032 0.30 -1.6
4,828,348 + Echvi_4032 0.31 -0.7
4,828,348 + Echvi_4032 0.31 -0.5
4,828,349 - Echvi_4032 0.31 -0.8
4,828,360 - Echvi_4032 0.32 -0.7
4,828,365 + Echvi_4032 0.32 +0.1
4,828,603 + Echvi_4032 0.49 -2.2
4,828,885 + Echvi_4032 0.70 -1.3
4,828,885 + Echvi_4032 0.70 -0.4
4,828,886 - Echvi_4032 0.70 -3.2
4,828,886 - Echvi_4032 0.70 -1.4
4,828,892 + Echvi_4032 0.71 -1.0
4,828,892 + Echvi_4032 0.71 -3.3
4,828,893 - Echvi_4032 0.71 -1.1
4,828,893 - Echvi_4032 0.71 -1.5
4,828,959 + Echvi_4032 0.76 -1.4
4,828,959 + Echvi_4032 0.76 -1.0
4,828,965 - Echvi_4032 0.76 -2.0
4,829,045 - Echvi_4032 0.82 -2.0
4,829,109 + Echvi_4032 0.87 +0.6
4,829,109 + Echvi_4032 0.87 +0.5
4,829,109 + Echvi_4032 0.87 -1.9
4,829,110 - Echvi_4032 0.87 -2.1
4,829,110 - Echvi_4032 0.87 -1.1
4,829,198 + +0.2
4,829,198 + -3.4
4,829,209 + -2.0
4,829,210 - -1.1
4,829,263 - -1.7
4,829,263 - -1.3
4,829,266 - -2.0
4,829,290 - -2.5
4,829,301 - +0.8
4,829,391 - +2.5
4,829,392 + -1.9
4,829,392 + -3.0
4,829,392 + -0.8
4,829,399 + -0.9
4,829,400 - +1.3
4,829,446 + +0.3
4,829,446 + +0.8
4,829,446 + -0.4
4,829,458 + -0.9
4,829,465 + -0.5
4,829,469 - +1.7
4,829,501 + -0.6
4,829,509 - +2.1
4,829,546 - +1.4
4,829,546 - +2.1
4,829,595 + -0.4
4,829,628 - +1.1
4,829,630 - +1.3
4,829,630 - +1.6
4,829,663 + -0.2
4,829,664 - +2.1
4,829,774 + -0.1
4,829,775 - +0.6
4,829,786 - +0.5
4,829,786 - +0.6
4,829,860 - +0.5
4,829,886 - +0.0
4,829,921 - +1.7
4,829,931 + +0.5
4,829,981 + +0.9
4,829,982 - +0.3
4,830,046 + Echvi_4033 0.10 +0.9
4,830,101 - Echvi_4033 0.16 +2.7
4,830,108 + Echvi_4033 0.16 -1.7
4,830,108 + Echvi_4033 0.16 +0.9
4,830,109 - Echvi_4033 0.16 +2.8
4,830,196 + Echvi_4033 0.24 -0.7
4,830,219 + Echvi_4033 0.26 +1.9

Or see this region's nucleotide sequence