Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3622

Experiment: m.b. perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3620 and Echvi_3621 are separated by 389 nucleotidesEchvi_3621 and Echvi_3622 are separated by 55 nucleotidesEchvi_3622 and Echvi_3623 are separated by 382 nucleotides Echvi_3620: Echvi_3620 - heavy metal efflux pump (cobalt-zinc-cadmium), at 4,296,343 to 4,300,698 _3620 Echvi_3621: Echvi_3621 - hypothetical protein, at 4,301,088 to 4,301,429 _3621 Echvi_3622: Echvi_3622 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 4,301,485 to 4,301,862 _3622 Echvi_3623: Echvi_3623 - Glycerophosphoryl diester phosphodiesterase, at 4,302,245 to 4,303,018 _3623 Position (kb) 4301 4302Strain fitness (log2 ratio) -2 -1 0 1 2at 4300.500 kb on - strandat 4300.531 kb on + strandat 4300.536 kb on + strandat 4300.537 kb on - strandat 4300.558 kb on + strandat 4300.558 kb on + strandat 4300.567 kb on - strandat 4300.567 kb on - strandat 4300.575 kb on + strandat 4300.583 kb on - strandat 4300.608 kb on + strandat 4300.609 kb on - strandat 4300.628 kb on - strandat 4300.641 kb on + strandat 4300.681 kb on - strandat 4300.684 kb on - strandat 4300.760 kb on + strandat 4300.818 kb on + strandat 4300.840 kb on + strandat 4300.852 kb on + strandat 4300.852 kb on + strandat 4300.865 kb on + strandat 4300.893 kb on + strandat 4301.064 kb on - strandat 4301.064 kb on - strandat 4301.064 kb on - strandat 4301.064 kb on - strandat 4301.064 kb on - strandat 4301.067 kb on - strandat 4301.074 kb on + strandat 4301.075 kb on - strandat 4301.078 kb on + strandat 4301.079 kb on - strandat 4301.089 kb on + strandat 4301.094 kb on + strandat 4301.095 kb on - strandat 4301.158 kb on - strand, within Echvi_3621at 4301.211 kb on + strand, within Echvi_3621at 4301.214 kb on + strand, within Echvi_3621at 4301.214 kb on + strand, within Echvi_3621at 4301.214 kb on + strand, within Echvi_3621at 4301.215 kb on - strand, within Echvi_3621at 4301.215 kb on - strand, within Echvi_3621at 4301.218 kb on + strand, within Echvi_3621at 4301.218 kb on + strand, within Echvi_3621at 4301.218 kb on + strand, within Echvi_3621at 4301.342 kb on + strand, within Echvi_3621at 4301.343 kb on - strand, within Echvi_3621at 4301.343 kb on - strand, within Echvi_3621at 4301.343 kb on - strand, within Echvi_3621at 4301.380 kb on + strand, within Echvi_3621at 4301.381 kb on - strand, within Echvi_3621at 4301.384 kb on - strand, within Echvi_3621at 4301.391 kb on + strand, within Echvi_3621at 4301.403 kb on + strandat 4301.403 kb on + strandat 4301.418 kb on + strandat 4301.444 kb on + strandat 4301.444 kb on + strandat 4301.444 kb on + strandat 4301.444 kb on + strandat 4301.445 kb on - strandat 4301.445 kb on - strandat 4301.445 kb on - strandat 4301.448 kb on + strandat 4301.448 kb on + strandat 4301.486 kb on + strandat 4301.486 kb on + strandat 4301.486 kb on + strandat 4301.486 kb on + strandat 4301.487 kb on - strandat 4301.487 kb on - strandat 4301.487 kb on - strandat 4301.531 kb on - strand, within Echvi_3622at 4301.605 kb on + strand, within Echvi_3622at 4301.615 kb on + strand, within Echvi_3622at 4301.617 kb on + strand, within Echvi_3622at 4301.617 kb on + strand, within Echvi_3622at 4301.617 kb on + strand, within Echvi_3622at 4301.617 kb on + strand, within Echvi_3622at 4301.691 kb on - strand, within Echvi_3622at 4301.719 kb on + strand, within Echvi_3622at 4301.720 kb on - strand, within Echvi_3622at 4301.720 kb on - strand, within Echvi_3622at 4301.752 kb on - strand, within Echvi_3622at 4301.761 kb on + strand, within Echvi_3622at 4301.863 kb on + strandat 4301.911 kb on - strandat 4302.054 kb on + strandat 4302.148 kb on - strandat 4302.154 kb on - strandat 4302.160 kb on - strandat 4302.188 kb on - strandat 4302.188 kb on - strandat 4302.201 kb on - strandat 4302.286 kb on + strandat 4302.287 kb on - strandat 4302.288 kb on + strandat 4302.288 kb on + strandat 4302.288 kb on + strandat 4302.288 kb on + strandat 4302.289 kb on - strandat 4302.322 kb on + strandat 4302.358 kb on + strand, within Echvi_3623at 4302.359 kb on - strand, within Echvi_3623at 4302.453 kb on + strand, within Echvi_3623at 4302.454 kb on - strandat 4302.454 kb on - strand, within Echvi_3623at 4302.454 kb on - strand, within Echvi_3623at 4302.454 kb on - strand, within Echvi_3623at 4302.454 kb on - strand, within Echvi_3623at 4302.505 kb on + strand, within Echvi_3623at 4302.509 kb on + strand, within Echvi_3623at 4302.509 kb on + strand, within Echvi_3623at 4302.509 kb on + strand, within Echvi_3623at 4302.510 kb on - strand, within Echvi_3623at 4302.556 kb on + strand, within Echvi_3623at 4302.556 kb on + strand, within Echvi_3623at 4302.634 kb on - strand, within Echvi_3623at 4302.634 kb on - strand, within Echvi_3623at 4302.655 kb on + strand, within Echvi_3623at 4302.682 kb on - strand, within Echvi_3623at 4302.690 kb on + strand, within Echvi_3623at 4302.690 kb on + strand, within Echvi_3623at 4302.713 kb on + strand, within Echvi_3623at 4302.714 kb on - strand, within Echvi_3623at 4302.724 kb on + strand, within Echvi_3623at 4302.729 kb on - strand, within Echvi_3623at 4302.779 kb on + strand, within Echvi_3623at 4302.793 kb on + strand, within Echvi_3623at 4302.793 kb on + strand, within Echvi_3623at 4302.794 kb on - strand, within Echvi_3623at 4302.839 kb on + strand, within Echvi_3623at 4302.841 kb on + strand, within Echvi_3623at 4302.842 kb on - strand, within Echvi_3623at 4302.844 kb on + strand, within Echvi_3623

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 75 mM
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4,300,500 - +0.6
4,300,531 + -0.2
4,300,536 + +0.4
4,300,537 - +0.5
4,300,558 + -1.3
4,300,558 + +0.4
4,300,567 - -0.6
4,300,567 - +0.1
4,300,575 + +0.2
4,300,583 - -1.4
4,300,608 + +0.7
4,300,609 - -0.5
4,300,628 - +0.2
4,300,641 + +0.4
4,300,681 - +0.4
4,300,684 - -0.5
4,300,760 + -0.4
4,300,818 + -0.9
4,300,840 + -0.6
4,300,852 + +0.1
4,300,852 + -0.8
4,300,865 + +0.5
4,300,893 + +0.2
4,301,064 - -1.2
4,301,064 - -0.3
4,301,064 - -0.5
4,301,064 - -1.2
4,301,064 - +0.8
4,301,067 - -0.5
4,301,074 + +0.5
4,301,075 - -0.8
4,301,078 + +0.8
4,301,079 - -1.4
4,301,089 + -1.3
4,301,094 + +0.3
4,301,095 - -0.1
4,301,158 - Echvi_3621 0.20 -1.0
4,301,211 + Echvi_3621 0.36 +1.0
4,301,214 + Echvi_3621 0.37 -0.1
4,301,214 + Echvi_3621 0.37 -0.3
4,301,214 + Echvi_3621 0.37 +1.0
4,301,215 - Echvi_3621 0.37 +1.1
4,301,215 - Echvi_3621 0.37 -0.4
4,301,218 + Echvi_3621 0.38 -0.3
4,301,218 + Echvi_3621 0.38 +0.3
4,301,218 + Echvi_3621 0.38 -0.7
4,301,342 + Echvi_3621 0.74 +0.9
4,301,343 - Echvi_3621 0.75 +0.4
4,301,343 - Echvi_3621 0.75 -0.2
4,301,343 - Echvi_3621 0.75 -0.6
4,301,380 + Echvi_3621 0.85 -0.3
4,301,381 - Echvi_3621 0.86 +1.4
4,301,384 - Echvi_3621 0.87 +0.0
4,301,391 + Echvi_3621 0.89 +0.4
4,301,403 + +0.3
4,301,403 + -0.7
4,301,418 + +0.2
4,301,444 + +0.0
4,301,444 + -0.6
4,301,444 + -2.5
4,301,444 + -0.7
4,301,445 - -0.5
4,301,445 - -0.2
4,301,445 - -0.3
4,301,448 + +2.0
4,301,448 + +0.0
4,301,486 + +0.2
4,301,486 + -0.3
4,301,486 + +0.7
4,301,486 + -0.7
4,301,487 - -2.3
4,301,487 - -0.8
4,301,487 - -0.3
4,301,531 - Echvi_3622 0.12 -2.1
4,301,605 + Echvi_3622 0.32 -1.1
4,301,615 + Echvi_3622 0.34 -0.3
4,301,617 + Echvi_3622 0.35 -0.9
4,301,617 + Echvi_3622 0.35 -2.1
4,301,617 + Echvi_3622 0.35 -1.1
4,301,617 + Echvi_3622 0.35 -0.6
4,301,691 - Echvi_3622 0.54 -0.7
4,301,719 + Echvi_3622 0.62 +0.9
4,301,720 - Echvi_3622 0.62 -1.2
4,301,720 - Echvi_3622 0.62 +1.0
4,301,752 - Echvi_3622 0.71 -1.5
4,301,761 + Echvi_3622 0.73 -0.8
4,301,863 + +0.4
4,301,911 - -0.6
4,302,054 + -0.1
4,302,148 - -0.0
4,302,154 - -0.8
4,302,160 - -0.1
4,302,188 - -0.3
4,302,188 - -0.1
4,302,201 - -1.3
4,302,286 + +0.3
4,302,287 - -1.5
4,302,288 + -0.3
4,302,288 + -0.2
4,302,288 + -0.2
4,302,288 + +0.5
4,302,289 - -0.2
4,302,322 + +0.7
4,302,358 + Echvi_3623 0.15 -0.9
4,302,359 - Echvi_3623 0.15 +0.6
4,302,453 + Echvi_3623 0.27 -0.3
4,302,454 - -0.3
4,302,454 - Echvi_3623 0.27 -1.6
4,302,454 - Echvi_3623 0.27 -0.5
4,302,454 - Echvi_3623 0.27 -0.7
4,302,454 - Echvi_3623 0.27 -0.2
4,302,505 + Echvi_3623 0.34 +0.1
4,302,509 + Echvi_3623 0.34 -0.1
4,302,509 + Echvi_3623 0.34 +0.4
4,302,509 + Echvi_3623 0.34 +0.4
4,302,510 - Echvi_3623 0.34 +0.3
4,302,556 + Echvi_3623 0.40 -0.3
4,302,556 + Echvi_3623 0.40 -0.5
4,302,634 - Echvi_3623 0.50 -0.3
4,302,634 - Echvi_3623 0.50 -0.7
4,302,655 + Echvi_3623 0.53 +0.5
4,302,682 - Echvi_3623 0.56 +0.0
4,302,690 + Echvi_3623 0.57 -0.8
4,302,690 + Echvi_3623 0.57 -0.3
4,302,713 + Echvi_3623 0.60 +0.0
4,302,714 - Echvi_3623 0.61 -0.7
4,302,724 + Echvi_3623 0.62 -1.2
4,302,729 - Echvi_3623 0.63 +0.8
4,302,779 + Echvi_3623 0.69 -0.7
4,302,793 + Echvi_3623 0.71 -1.1
4,302,793 + Echvi_3623 0.71 +0.1
4,302,794 - Echvi_3623 0.71 -0.2
4,302,839 + Echvi_3623 0.77 -0.8
4,302,841 + Echvi_3623 0.77 -0.5
4,302,842 - Echvi_3623 0.77 -0.4
4,302,844 + Echvi_3623 0.77 -0.2

Or see this region's nucleotide sequence