Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2908

Experiment: m.b. perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2906 and Echvi_2907 are separated by 616 nucleotidesEchvi_2907 and Echvi_2908 are separated by 55 nucleotidesEchvi_2908 and Echvi_2909 are separated by 338 nucleotides Echvi_2906: Echvi_2906 - hypothetical protein, at 3,482,618 to 3,482,884 _2906 Echvi_2907: Echvi_2907 - tRNA, at 3,483,501 to 3,483,577 _2907 Echvi_2908: Echvi_2908 - succinyl-CoA synthetase, beta subunit, at 3,483,633 to 3,484,850 _2908 Echvi_2909: Echvi_2909 - ABC-type antimicrobial peptide transport system, ATPase component, at 3,485,189 to 3,485,845 _2909 Position (kb) 3483 3484 3485Strain fitness (log2 ratio) -3 -2 -1 0 1at 3482.670 kb on + strand, within Echvi_2906at 3482.675 kb on - strand, within Echvi_2906at 3482.694 kb on + strand, within Echvi_2906at 3482.710 kb on + strand, within Echvi_2906at 3482.710 kb on + strand, within Echvi_2906at 3482.719 kb on + strand, within Echvi_2906at 3482.720 kb on - strand, within Echvi_2906at 3482.720 kb on - strandat 3482.720 kb on - strand, within Echvi_2906at 3482.753 kb on + strand, within Echvi_2906at 3482.774 kb on + strand, within Echvi_2906at 3482.774 kb on + strand, within Echvi_2906at 3482.779 kb on + strand, within Echvi_2906at 3482.779 kb on + strand, within Echvi_2906at 3482.779 kb on + strand, within Echvi_2906at 3482.779 kb on + strand, within Echvi_2906at 3482.780 kb on - strand, within Echvi_2906at 3482.780 kb on - strand, within Echvi_2906at 3482.780 kb on - strand, within Echvi_2906at 3482.901 kb on + strandat 3482.990 kb on + strandat 3483.029 kb on - strandat 3483.029 kb on - strandat 3483.077 kb on + strandat 3483.092 kb on - strandat 3483.092 kb on - strandat 3483.092 kb on - strandat 3483.182 kb on - strandat 3483.223 kb on + strandat 3483.239 kb on - strandat 3483.243 kb on - strandat 3483.440 kb on + strandat 3483.441 kb on - strandat 3483.622 kb on - strandat 3483.622 kb on - strandat 3483.622 kb on - strandat 3483.684 kb on + strandat 3483.794 kb on + strand, within Echvi_2908at 3483.805 kb on - strand, within Echvi_2908at 3483.834 kb on - strand, within Echvi_2908at 3483.871 kb on - strand, within Echvi_2908at 3483.917 kb on + strand, within Echvi_2908at 3483.936 kb on + strand, within Echvi_2908at 3483.937 kb on - strand, within Echvi_2908at 3483.937 kb on - strand, within Echvi_2908at 3483.951 kb on - strand, within Echvi_2908at 3484.049 kb on - strand, within Echvi_2908at 3484.049 kb on - strand, within Echvi_2908at 3484.075 kb on - strand, within Echvi_2908at 3484.167 kb on + strand, within Echvi_2908at 3484.233 kb on - strand, within Echvi_2908at 3484.241 kb on - strand, within Echvi_2908at 3484.322 kb on + strand, within Echvi_2908at 3484.474 kb on - strand, within Echvi_2908at 3484.474 kb on - strand, within Echvi_2908at 3484.474 kb on - strand, within Echvi_2908at 3484.478 kb on - strand, within Echvi_2908at 3484.478 kb on - strand, within Echvi_2908at 3484.478 kb on - strand, within Echvi_2908at 3484.507 kb on + strand, within Echvi_2908at 3484.511 kb on - strand, within Echvi_2908at 3484.511 kb on - strand, within Echvi_2908at 3484.588 kb on - strand, within Echvi_2908at 3484.712 kb on - strand, within Echvi_2908at 3484.844 kb on + strandat 3484.905 kb on + strandat 3484.906 kb on - strandat 3485.047 kb on + strandat 3485.047 kb on + strandat 3485.048 kb on - strandat 3485.053 kb on - strandat 3485.188 kb on + strandat 3485.188 kb on + strandat 3485.188 kb on + strandat 3485.188 kb on + strandat 3485.844 kb on - strandat 3485.847 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 75 mM
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3,482,670 + Echvi_2906 0.19 +0.2
3,482,675 - Echvi_2906 0.21 -1.2
3,482,694 + Echvi_2906 0.28 -1.0
3,482,710 + Echvi_2906 0.34 -0.4
3,482,710 + Echvi_2906 0.34 -0.8
3,482,719 + Echvi_2906 0.38 -0.5
3,482,720 - Echvi_2906 0.38 -1.6
3,482,720 - +0.7
3,482,720 - Echvi_2906 0.38 +0.1
3,482,753 + Echvi_2906 0.51 +1.7
3,482,774 + Echvi_2906 0.58 +0.9
3,482,774 + Echvi_2906 0.58 +0.4
3,482,779 + Echvi_2906 0.60 +0.5
3,482,779 + Echvi_2906 0.60 -0.3
3,482,779 + Echvi_2906 0.60 -0.7
3,482,779 + Echvi_2906 0.60 -2.6
3,482,780 - Echvi_2906 0.61 -1.8
3,482,780 - Echvi_2906 0.61 +0.4
3,482,780 - Echvi_2906 0.61 -0.2
3,482,901 + -0.0
3,482,990 + -0.6
3,483,029 - -0.2
3,483,029 - -0.1
3,483,077 + +0.2
3,483,092 - -0.2
3,483,092 - -0.2
3,483,092 - +0.0
3,483,182 - +0.1
3,483,223 + +0.7
3,483,239 - -0.1
3,483,243 - -1.0
3,483,440 + -0.5
3,483,441 - +1.3
3,483,622 - +0.6
3,483,622 - -0.1
3,483,622 - -0.6
3,483,684 + -0.9
3,483,794 + Echvi_2908 0.13 -1.4
3,483,805 - Echvi_2908 0.14 +0.3
3,483,834 - Echvi_2908 0.17 -1.2
3,483,871 - Echvi_2908 0.20 +0.5
3,483,917 + Echvi_2908 0.23 -0.2
3,483,936 + Echvi_2908 0.25 +1.0
3,483,937 - Echvi_2908 0.25 -1.2
3,483,937 - Echvi_2908 0.25 -1.7
3,483,951 - Echvi_2908 0.26 -1.0
3,484,049 - Echvi_2908 0.34 -1.2
3,484,049 - Echvi_2908 0.34 -0.5
3,484,075 - Echvi_2908 0.36 -1.8
3,484,167 + Echvi_2908 0.44 -2.4
3,484,233 - Echvi_2908 0.49 -0.0
3,484,241 - Echvi_2908 0.50 -1.4
3,484,322 + Echvi_2908 0.57 -1.7
3,484,474 - Echvi_2908 0.69 -0.6
3,484,474 - Echvi_2908 0.69 -1.9
3,484,474 - Echvi_2908 0.69 -0.9
3,484,478 - Echvi_2908 0.69 -1.0
3,484,478 - Echvi_2908 0.69 -2.5
3,484,478 - Echvi_2908 0.69 -1.7
3,484,507 + Echvi_2908 0.72 -0.5
3,484,511 - Echvi_2908 0.72 -1.8
3,484,511 - Echvi_2908 0.72 -3.1
3,484,588 - Echvi_2908 0.78 -1.4
3,484,712 - Echvi_2908 0.89 -0.9
3,484,844 + +0.4
3,484,905 + -0.5
3,484,906 - +0.3
3,485,047 + -1.6
3,485,047 + +0.3
3,485,048 - +0.8
3,485,053 - -0.5
3,485,188 + -0.3
3,485,188 + -0.0
3,485,188 + -1.0
3,485,188 + -2.4
3,485,844 - -0.0
3,485,847 - -1.3

Or see this region's nucleotide sequence